FFCP PHASE1:Hg19::chr2:176973498..176973524,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3236 | |EntrezGene=3236 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5133 | |HGNC=5133 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000490088_5end | |association_with_transcript=0bp_to_ENST00000490088_5end | ||
|cluster_id=chr2:176973498..176973524,+ | |||
|description=CAGE_peak_1_at_HOXD10_5end | |description=CAGE_peak_1_at_HOXD10_5end | ||
|id=chr2:176973498..176973524,+ | |id=chr2:176973498..176973524,+ | ||
|ontology_enrichment_celltype=CL:1000449!1.87e-15!16;CL:1000497!2.49e-13!18;CL:0002518!2.49e-13!18;CL:1000507!8.97e-13!12;CL:1000494!8.97e-13!12;CL:0002681!2.55e-11!13;CL:0002584!2.55e-11!13 | |ontology_enrichment_celltype=CL:1000449!1.87e-15!16;CL:1000497!2.49e-13!18;CL:0002518!2.49e-13!18;CL:1000507!8.97e-13!12;CL:1000494!8.97e-13!12;CL:0002681!2.55e-11!13;CL:0002584!2.55e-11!13 | ||
|ontology_enrichment_celltype_v019=CL:1000449;4.40e-20;15!CL:1000497;1.96e-17;17!CL:0002518;1.96e-17;17!CL:1000507;6.20e-17;10!CL:1000494;6.20e-17;10!CL:0002681;1.53e-13;12!CL:0002584;1.53e-13;12!CL:1000746;9.73e-10;7!CL:1000612;9.73e-10;7!CL:0000062;5.43e-08;9!CL:0000650;5.29e-07;2!CL:1000500;5.29e-07;2!CL:1000618;5.29e-07;2!CL:1001318;5.29e-07;2!CL:0002173;5.29e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,4.23e-20,15;CL:1000497,1.89e-17,17;CL:0002518,1.89e-17,17;CL:1000507,5.94e-17,10;CL:1000494,5.94e-17,10;CL:0002681,1.77e-13,12;CL:0002584,1.77e-13,12;CL:1000746,9.93e-10,7;CL:1000612,9.93e-10,7;CL:0000650,5.45e-07,2;CL:1000500,5.45e-07,2;CL:1000618,5.45e-07,2;CL:1001318,5.45e-07,2;CL:0002173,5.45e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0005795;1.91e-07;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;1.07e-09;3!DOID:127;1.07e-09;3!DOID:0060072;2.34e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.01e-09,3;DOID:127,1.01e-09,3;DOID:0060072,2.24e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004876!2.57e-18!20;UBERON:0006555!1.01e-16!17;UBERON:0005103!1.01e-16!17;UBERON:0000083!1.01e-16!17;UBERON:0009201!1.01e-16!17;UBERON:0004819!1.01e-16!17;UBERON:0006553!1.01e-16!17;UBERON:0003074!1.01e-16!17;UBERON:0003060!1.01e-16!17;UBERON:0002113!2.79e-16!27;UBERON:0003918!2.79e-16!27;UBERON:0005095!2.79e-16!27;UBERON:0007687!2.79e-16!27;UBERON:0000489!4.94e-16!32;UBERON:0000080!1.44e-15!18;UBERON:0002120!1.44e-15!18;UBERON:0004875!1.44e-15!18;UBERON:0005721!1.44e-15!18;UBERON:0005754!1.44e-15!18;UBERON:0007297!1.44e-15!18;UBERON:0004211!1.87e-15!16;UBERON:0001285!1.87e-15!16;UBERON:0007684!1.87e-15!16;UBERON:0003220!1.87e-15!16;UBERON:0004208!1.87e-15!16;UBERON:0006554!2.50e-15!44;UBERON:0001008!7.89e-15!45;UBERON:0003064!3.12e-14!37;UBERON:0000058!8.37e-13!26;UBERON:0003887!8.95e-13!21;UBERON:0009773!8.97e-13!12;UBERON:0001231!8.97e-13!12;UBERON:0004810!8.97e-13!12;UBERON:0001225!2.55e-11!13;UBERON:0008987!2.55e-11!13;UBERON:0001851!9.62e-09!16;UBERON:0005156!2.21e-08!59;UBERON:0000990!2.21e-08!59;UBERON:0000353!4.32e-08!17;UBERON:0005172!1.07e-07!55;UBERON:0005173!1.07e-07!55;UBERON:0003886!1.56e-07!63;UBERON:0003133!1.91e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;1.33e-22;24!UBERON:0011143;1.33e-22;24!UBERON:0006555;4.40e-20;15!UBERON:0004819;4.40e-20;15!UBERON:0001285;4.40e-20;15!UBERON:0007684;4.40e-20;15!UBERON:0000489;4.68e-18;29!UBERON:0006554;2.49e-17;30!UBERON:0001008;2.49e-17;30!UBERON:0004211;6.20e-17;10!UBERON:0009773;6.20e-17;10!UBERON:0001231;6.20e-17;10!UBERON:0004810;6.20e-17;10!UBERON:0001225;1.53e-13;12!UBERON:0008987;1.53e-13;12!UBERON:0001851;1.48e-10;15!UBERON:0000353;1.48e-10;15!UBERON:0000074;9.73e-10;7!UBERON:0001229;9.73e-10;7!UBERON:0003567;5.29e-07;2!UBERON:0003838;5.29e-07;2!UBERON:0003586;5.29e-07;2!UBERON:0005169;5.29e-07;2!UBERON:0002321;5.29e-07;2!UBERON:0005215;5.29e-07;2!UBERON:0002303;5.29e-07;2!UBERON:0002319;5.29e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,2.07e-23,26;UBERON:0003918,2.07e-23,26;UBERON:0011143,2.07e-23,26;UBERON:0005095,2.07e-23,26;UBERON:0007687,2.07e-23,26;UBERON:0006555,3.63e-22,16;UBERON:0004819,3.63e-22,16;UBERON:0004211,4.23e-20,15;UBERON:0009773,4.23e-20,15;UBERON:0001231,4.23e-20,15;UBERON:0001285,4.23e-20,15;UBERON:0007684,4.23e-20,15;UBERON:0004208,4.23e-20,15;UBERON:0000489,5.59e-19,31;UBERON:0004810,5.94e-17,10;UBERON:0004876,9.41e-15,11;UBERON:0006554,1.54e-14,47;UBERON:0001008,3.85e-14,48;UBERON:0001225,1.77e-13,12;UBERON:0008987,1.77e-13,12;UBERON:0005103,8.92e-12,8;UBERON:0000083,8.92e-12,8;UBERON:0009201,8.92e-12,8;UBERON:0006553,8.92e-12,8;UBERON:0003074,8.92e-12,8;UBERON:0003060,8.92e-12,8;UBERON:0001851,1.65e-10,15;UBERON:0000353,1.65e-10,15;UBERON:0000080,2.15e-10,9;UBERON:0002120,2.15e-10,9;UBERON:0004875,2.15e-10,9;UBERON:0005721,2.15e-10,9;UBERON:0005754,2.15e-10,9;UBERON:0007297,2.15e-10,9;UBERON:0010532,9.93e-10,7;UBERON:0000074,9.93e-10,7;UBERON:0001229,9.93e-10,7;UBERON:0001230,9.93e-10,7;UBERON:0003220,9.93e-10,7;UBERON:0005749,9.93e-10,7;UBERON:0004199,9.93e-10,7;UBERON:0004209,9.93e-10,7;UBERON:0004198,9.93e-10,7;UBERON:0005172,2.96e-09,54;UBERON:0005173,2.96e-09,54;UBERON:0002417,5.70e-08,60;UBERON:0000916,5.70e-08,60;UBERON:0003064,7.46e-08,28;UBERON:0003887,1.25e-07,12;UBERON:0003567,5.45e-07,2;UBERON:0003838,5.45e-07,2;UBERON:0003586,5.45e-07,2;UBERON:0005169,5.45e-07,2;UBERON:0002321,5.45e-07,2;UBERON:0005215,5.45e-07,2;UBERON:0002303,5.45e-07,2;UBERON:0002319,5.45e-07,2 | |||
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| ||
|short_description=p1@HOXD10 | |short_description=p1@HOXD10 | ||
}} | }} |
Latest revision as of 08:54, 18 September 2015
Short description: | p1@HOXD10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXD10_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000490088_5end |
EntrezGene: | HOXD10 |
HGNC: | 5133 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 4.23e-20 | 15 |
kidney cell | 1.89e-17 | 17 |
kidney epithelial cell | 1.89e-17 | 17 |
kidney tubule cell | 5.94e-17 | 10 |
nephron tubule epithelial cell | 5.94e-17 | 10 |
kidney cortical cell | 1.77e-13 | 12 |
renal cortical epithelial cell | 1.77e-13 | 12 |
glomerular cell | 9.93e-10 | 7 |
kidney corpuscule cell | 9.93e-10 | 7 |
mesangial cell | 5.45e-07 | 2 |
kidney interstitial cell | 5.45e-07 | 2 |
juxtaglomerular complex cell | 5.45e-07 | 2 |
renal interstitial pericyte | 5.45e-07 | 2 |
extraglomerular mesangial cell | 5.45e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.01e-09 | 3 |
leiomyoma | 1.01e-09 | 3 |
benign neoplasm | 2.24e-07 | 4 |