FFCP PHASE1:Hg19::chr17:1248378..1248422,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:1248378..1248422,-
|short_description=p7@PAFAH1B1
|description=CAGE_peak_7_at_PAFAH1B1_5end
|association_with_transcript=-13bp_to_L13388_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5048 | |EntrezGene=5048 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=8574 | |HGNC=8574 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_L13388_5end | |||
|cluster_id=chr17:1248378..1248422,- | |||
|description=CAGE_peak_7_at_PAFAH1B1_5end | |||
|id=chr17:1248378..1248422,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!3.17e-08!143;DOID:14566!5.17e-07!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.50e-11!94;UBERON:0001016!3.50e-11!94;UBERON:0001017!1.19e-10!82;UBERON:0005743!1.49e-10!86;UBERON:0002780!2.65e-10!41;UBERON:0001890!2.65e-10!41;UBERON:0006240!2.65e-10!41;UBERON:0002020!3.96e-10!34;UBERON:0003528!3.96e-10!34;UBERON:0003080!4.95e-10!42;UBERON:0002346!5.37e-10!90;UBERON:0001049!1.14e-09!57;UBERON:0005068!1.14e-09!57;UBERON:0006241!1.14e-09!57;UBERON:0007135!1.14e-09!57;UBERON:0000481!1.36e-09!347;UBERON:0002791!3.80e-09!33;UBERON:0003075!3.93e-09!86;UBERON:0007284!3.93e-09!86;UBERON:0000924!4.05e-09!173;UBERON:0006601!4.05e-09!173;UBERON:0002616!5.77e-09!59;UBERON:0003056!6.72e-09!61;UBERON:0001893!7.16e-09!34;UBERON:0001869!7.40e-09!32;UBERON:0000955!1.30e-08!69;UBERON:0006238!1.30e-08!69;UBERON:0000477!1.62e-08!286;UBERON:0004121!2.15e-08!169;UBERON:0000033!4.79e-08!123;UBERON:0002619!5.87e-08!22;UBERON:0000956!7.06e-08!25;UBERON:0000203!7.06e-08!25;UBERON:0000483!1.72e-07!309;UBERON:0000153!3.97e-07!129;UBERON:0007811!3.97e-07!129;UBERON:0000119!4.76e-07!312;UBERON:0001950!7.31e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.02e-09;34!UBERON:0002020;1.02e-09;34!UBERON:0002791;1.08e-09;32!UBERON:0000956;1.94e-09;25!UBERON:0000203;1.94e-09;25!UBERON:0002619;2.05e-09;22!UBERON:0001869;6.81e-09;32!UBERON:0001893;2.80e-08;34!UBERON:0002780;2.84e-08;41!UBERON:0001890;2.84e-08;41!UBERON:0001950;4.45e-08;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.01e-11,89;UBERON:0003528,1.05e-11,34;UBERON:0002020,1.05e-11,34;UBERON:0001017,1.14e-11,81;UBERON:0002346,2.16e-11,86;UBERON:0002780,3.53e-11,41;UBERON:0001890,3.53e-11,41;UBERON:0003080,3.53e-11,41;UBERON:0006240,3.53e-11,41;UBERON:0011216,1.09e-10,223;UBERON:0002791,1.12e-10,32;UBERON:0003075,2.43e-10,82;UBERON:0007284,2.43e-10,82;UBERON:0003056,2.51e-10,61;UBERON:0001049,3.39e-10,56;UBERON:0005068,3.39e-10,56;UBERON:0006241,3.39e-10,56;UBERON:0007135,3.39e-10,56;UBERON:0001869,7.43e-10,32;UBERON:0000073,1.13e-09,53;UBERON:0002616,1.13e-09,53;UBERON:0004121,1.41e-09,171;UBERON:0000924,1.41e-09,171;UBERON:0006601,1.41e-09,171;UBERON:0001893,1.98e-09,34;UBERON:0002619,2.56e-09,22;UBERON:0010314,3.68e-09,132;UBERON:0000956,4.57e-09,25;UBERON:0000203,4.57e-09,25;UBERON:0000955,4.91e-09,68;UBERON:0006238,4.91e-09,68;UBERON:0001950,5.56e-08,20;UBERON:0010371,8.92e-07,104 | |||
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| ||
|short_description=p7@PAFAH1B1 | |||
}} | }} |
Latest revision as of 16:17, 18 September 2015
Short description: | p7@PAFAH1B1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PAFAH1B1_5end |
Coexpression cluster: | NA |
Association with transcript: | -13bp_to_L13388_5end |
EntrezGene: | PAFAH1B1 |
HGNC: | 8574 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 1.01e-11 | 89 |
brain grey matter | 1.05e-11 | 34 |
gray matter | 1.05e-11 | 34 |
central nervous system | 1.14e-11 | 81 |
neurectoderm | 2.16e-11 | 86 |
regional part of forebrain | 3.53e-11 | 41 |
forebrain | 3.53e-11 | 41 |
anterior neural tube | 3.53e-11 | 41 |
future forebrain | 3.53e-11 | 41 |
organ system subdivision | 1.09e-10 | 223 |
regional part of telencephalon | 1.12e-10 | 32 |
neural plate | 2.43e-10 | 82 |
presumptive neural plate | 2.43e-10 | 82 |
pre-chordal neural plate | 2.51e-10 | 61 |
neural tube | 3.39e-10 | 56 |
neural rod | 3.39e-10 | 56 |
future spinal cord | 3.39e-10 | 56 |
neural keel | 3.39e-10 | 56 |
cerebral hemisphere | 7.43e-10 | 32 |
regional part of nervous system | 1.13e-09 | 53 |
regional part of brain | 1.13e-09 | 53 |
ectoderm-derived structure | 1.41e-09 | 171 |
ectoderm | 1.41e-09 | 171 |
presumptive ectoderm | 1.41e-09 | 171 |
telencephalon | 1.98e-09 | 34 |
regional part of cerebral cortex | 2.56e-09 | 22 |
structure with developmental contribution from neural crest | 3.68e-09 | 132 |
cerebral cortex | 4.57e-09 | 25 |
pallium | 4.57e-09 | 25 |
brain | 4.91e-09 | 68 |
future brain | 4.91e-09 | 68 |
neocortex | 5.56e-08 | 20 |
ecto-epithelium | 8.92e-07 | 104 |