FFCP PHASE1:Hg19::chr17:7760425..7760452,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84316 | |EntrezGene=84316 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28212 | |HGNC=28212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=288bp_to_DQ893290,DQ893319,DQ896634_5end | |association_with_transcript=288bp_to_DQ893290,DQ893319,DQ896634_5end | ||
|cluster_id=chr17:7760425..7760452,- | |||
|description=CAGE_peak_3_at_LSMD1_5end | |description=CAGE_peak_3_at_LSMD1_5end | ||
|id=chr17:7760425..7760452,- | |id=chr17:7760425..7760452,- | ||
|ontology_enrichment_celltype=CL:0000183!3.34e-11!59;CL:0000187!1.33e-09!54;CL:0000680!2.96e-09!57;CL:0000056!2.96e-09!57;CL:0000355!2.96e-09!57;CL:0000055!9.39e-09!180;CL:0000192!5.87e-08!42;CL:0000514!5.87e-08!42;CL:0000393!1.22e-07!60;CL:0000211!1.22e-07!60;CL:0000359!4.46e-07!32;CL:0000222!8.00e-07!119 | |ontology_enrichment_celltype=CL:0000183!3.34e-11!59;CL:0000187!1.33e-09!54;CL:0000680!2.96e-09!57;CL:0000056!2.96e-09!57;CL:0000355!2.96e-09!57;CL:0000055!9.39e-09!180;CL:0000192!5.87e-08!42;CL:0000514!5.87e-08!42;CL:0000393!1.22e-07!60;CL:0000211!1.22e-07!60;CL:0000359!4.46e-07!32;CL:0000222!8.00e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000359;7.08e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,2.33e-09,55;CL:0000680,4.96e-09,58;CL:0000056,4.96e-09,58;CL:0000355,4.96e-09,58;CL:0000192,1.14e-07,43;CL:0000514,1.14e-07,43;CL:0000393,3.84e-07,61;CL:0000211,3.84e-07,61;CL:0000359,5.03e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0003528;6.59e-13;34!UBERON:0002020;6.59e-13;34!UBERON:0002791;1.15e-12;32!UBERON:0001869;1.91e-12;32!UBERON:0001893;6.26e-12;34!UBERON:0002780;4.99e-11;41!UBERON:0001890;4.99e-11;41!UBERON:0000956;8.46e-11;25!UBERON:0000203;8.46e-11;25!UBERON:0002619;1.56e-10;22!UBERON:0000073;2.09e-10;53!UBERON:0002616;2.09e-10;53!UBERON:0001950;2.32e-09;20!UBERON:0000955;3.55e-09;68!UBERON:0001017;1.78e-07;75 | |||
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| ||
|short_description=p3@LSMD1 | |short_description=p3@LSMD1 | ||
}} | }} |
Latest revision as of 02:11, 18 September 2015
Short description: | p3@LSMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LSMD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 288bp_to_DQ893290, DQ893319, DQ896634_5end |
EntrezGene: | LSMD1 |
HGNC: | 28212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 2.33e-09 | 55 |
muscle precursor cell | 4.96e-09 | 58 |
myoblast | 4.96e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.96e-09 | 58 |
smooth muscle cell | 1.14e-07 | 43 |
smooth muscle myoblast | 1.14e-07 | 43 |
electrically responsive cell | 3.84e-07 | 61 |
electrically active cell | 3.84e-07 | 61 |
vascular associated smooth muscle cell | 5.03e-07 | 32 |