FFCP PHASE1:Hg19::chr19:13617378..13617399,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:13617378..13617399,-
|short_description=p8@CACNA1A
|description=CAGE_peak_8_at_CACNA1A_5end
|association_with_transcript=-104bp_to_ENST00000325084,ENST000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=773 | |EntrezGene=773 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1388 | |HGNC=1388 | ||
|TSSclassifier=strong | |||
|UniProt=O00555,Q9NS88,B5TYJ1 | |UniProt=O00555,Q9NS88,B5TYJ1 | ||
|association_with_transcript=-104bp_to_ENST00000325084,ENST00000360228,NM_000068,NM_001127221,NM_001127222,NM_001174080,NM_023035,uc002mwy.3,uc010dze.2_5end | |||
|cluster_id=chr19:13617378..13617399,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_8_at_CACNA1A_5end | |||
|id=chr19:13617378..13617399,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;6.62e-39;3!UBERON:0006601;5.30e-07;82 | |||
|ontology_enrichment_disease=DOID:3307!2.08e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3307;1.12e-25;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3307,3.16e-26,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!6.76e-59!57;UBERON:0005068!6.76e-59!57;UBERON:0006241!6.76e-59!57;UBERON:0007135!6.76e-59!57;UBERON:0002616!3.88e-50!59;UBERON:0001017!5.85e-50!82;UBERON:0001893!1.92e-49!34;UBERON:0002020!2.96e-49!34;UBERON:0003528!2.96e-49!34;UBERON:0001869!4.71e-49!32;UBERON:0005743!3.69e-47!86;UBERON:0002791!4.70e-47!33;UBERON:0000955!2.24e-46!69;UBERON:0006238!2.24e-46!69;UBERON:0002780!2.07e-43!41;UBERON:0001890!2.07e-43!41;UBERON:0006240!2.07e-43!41;UBERON:0002619!1.64e-42!22;UBERON:0001950!2.27e-42!20;UBERON:0003080!3.22e-42!42;UBERON:0000073!1.04e-41!94;UBERON:0001016!1.04e-41!94;UBERON:0000956!9.13e-41!25;UBERON:0000203!9.13e-41!25;UBERON:0003075!2.83e-40!86;UBERON:0007284!2.83e-40!86;UBERON:0002346!5.01e-38!90;UBERON:0003056!6.77e-27!61;UBERON:0007023!4.07e-26!115;UBERON:0000033!2.32e-23!123;UBERON:0000153!8.06e-22!129;UBERON:0007811!8.06e-22!129;UBERON:0004121!1.35e-18!169;UBERON:0000924!6.36e-18!173;UBERON:0006601!6.36e-18!173;UBERON:0000200!1.46e-17!6;UBERON:0003076!3.48e-17!15;UBERON:0003057!3.48e-17!15;UBERON:0000025!5.09e-17!194;UBERON:0002021!1.33e-15!5;UBERON:0004733!3.61e-14!12;UBERON:0002028!3.61e-14!12;UBERON:0007277!3.61e-14!12;UBERON:0004732!5.79e-13!13;UBERON:0001871!7.48e-13!7;UBERON:0000475!8.34e-13!365;UBERON:0004111!1.43e-11!241;UBERON:0002680!4.48e-11!9;UBERON:0001895!4.48e-11!9;UBERON:0010092!4.48e-11!9;UBERON:0000483!2.11e-10!309;UBERON:0000119!3.45e-10!312;UBERON:0002308!3.85e-10!9;UBERON:0000125!3.85e-10!9;UBERON:0001872!6.76e-10!5;UBERON:0002771!1.04e-09!3;UBERON:0000477!2.21e-09!286;UBERON:0000064!7.49e-09!219;UBERON:0000988!2.31e-08!3;UBERON:0002298!3.07e-08!8;UBERON:0002420!1.54e-07!9;UBERON:0007245!1.54e-07!9;UBERON:0010009!1.54e-07!9;UBERON:0010011!1.54e-07!9;UBERON:0000454!1.54e-07!9;UBERON:0001870!4.14e-07!2;UBERON:0000369!6.44e-07!4;UBERON:0002435!6.44e-07!4;UBERON:0000204!6.44e-07!4;UBERON:0010082!6.44e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.43e-57;20!UBERON:0002619;2.83e-52;22!UBERON:0000956;3.90e-46;25!UBERON:0000203;3.90e-46;25!UBERON:0002021;1.06e-39;5!UBERON:0002791;1.93e-32;32!UBERON:0001869;3.55e-31;32!UBERON:0003528;2.47e-30;34!UBERON:0002020;2.47e-30;34!UBERON:0001893;7.94e-30;34!UBERON:0000073;4.87e-21;53!UBERON:0002616;4.87e-21;53!UBERON:0002037;8.02e-20;6!UBERON:0002780;5.34e-18;41!UBERON:0001890;5.34e-18;41!UBERON:0002902;9.72e-14;1!UBERON:0002022;9.72e-14;1!UBERON:0009899;9.72e-14;1!UBERON:0002680;2.00e-13;9!UBERON:0001895;2.00e-13;9!UBERON:0000955;2.49e-12;68!UBERON:0001016;7.97e-12;83!UBERON:0001872;7.13e-11;5!UBERON:0001017;1.36e-10;75!UBERON:0004733;3.28e-10;12!UBERON:0002028;3.28e-10;12!UBERON:0004732;1.82e-09;13!UBERON:0001871;5.09e-08;6!UBERON:0007023;1.62e-07;114!UBERON:0002771;1.64e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,4.44e-57,20;UBERON:0002619,4.90e-52,22;UBERON:0000956,6.34e-46,25;UBERON:0000203,6.34e-46,25;UBERON:0002021,5.29e-40,5;UBERON:0000073,3.72e-37,53;UBERON:0002616,3.72e-37,53;UBERON:0002791,5.62e-36,32;UBERON:0001869,5.62e-36,32;UBERON:0001049,3.98e-35,56;UBERON:0005068,3.98e-35,56;UBERON:0006241,3.98e-35,56;UBERON:0007135,3.98e-35,56;UBERON:0003528,7.30e-34,34;UBERON:0002020,7.30e-34,34;UBERON:0001893,7.30e-34,34;UBERON:0000955,2.45e-28,68;UBERON:0006238,2.45e-28,68;UBERON:0002780,4.77e-28,41;UBERON:0001890,4.77e-28,41;UBERON:0003080,4.77e-28,41;UBERON:0006240,4.77e-28,41;UBERON:0001017,1.15e-23,81;UBERON:0003075,1.15e-23,82;UBERON:0007284,1.15e-23,82;UBERON:0002346,1.65e-22,86;UBERON:0001016,3.33e-21,89;UBERON:0002037,8.04e-20,6;UBERON:0006215,8.04e-20,6;UBERON:0003056,1.20e-18,61;UBERON:0010371,2.18e-18,104;UBERON:0010314,3.51e-14,132;UBERON:0007023,3.56e-14,114;UBERON:0002902,6.65e-14,1;UBERON:0009899,6.65e-14,1;UBERON:0002022,1.61e-13,1;UBERON:0002680,2.00e-13,9;UBERON:0001895,2.00e-13,9;UBERON:0010092,2.00e-13,9;UBERON:0001872,1.23e-10,5;UBERON:0004121,1.90e-10,171;UBERON:0000924,1.90e-10,171;UBERON:0006601,1.90e-10,171;UBERON:0004733,3.28e-10,12;UBERON:0002028,3.28e-10,12;UBERON:0007277,3.28e-10,12;UBERON:0004732,1.82e-09,13;UBERON:0000025,2.98e-09,192;UBERON:0011216,5.24e-09,223;UBERON:0003076,2.85e-08,15;UBERON:0003057,2.85e-08,15;UBERON:0001871,4.92e-08,6;UBERON:0002771,1.45e-07,2;UBERON:0004111,4.66e-07,240 | |||
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|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0.211931901159562,0,0,0.515281080091258,0,0,0.292311015483596,0.757301322732344,0,0,0,0,0.169560592310488,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0.0890320356467374,0,0,0,0,0,0.94443704049192,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703347082052564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.649376687132959,0,0,0,0,0,0,0,0,0,0,0,0.482385754501632,3.05163472634166,13.7118282314719,7.68423809279223,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,1.2029051231617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0.415440338029185,0,0,1.09349201984444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,1.46431517882356,0.751145584238999,0,0.443716206147409,0.620964029413834,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642292250964595,1.41696576325585,1.27707087245721,0.82046545696302,1.76450187355203,1.52145955421279,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472763092328763,0,1.03343398250592,1.01465296310251,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.339848664884159,0.986591603442736,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,1.60342272946051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,1.29183831362738,1.30905207102113,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,1.9307228228694,0,0,0,0,0,0,0 | ||
|short_description=p8@CACNA1A | |||
}} | }} |
Latest revision as of 01:13, 16 September 2015
Short description: | p8@CACNA1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_CACNA1A_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -104bp_to_ENST00000325084, ENST00000360228, NM_000068, NM_001127221, NM_001127222, NM_001174080, NM_023035, uc002mwy.3, uc010dze.2_5end |
EntrezGene: | CACNA1A |
HGNC: | 1388 |
UniProt: | O00555Q9NS88B5TYJ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
teratoma | 3.16e-26 | 2 |