FF:12740-135I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005336 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008580;DRR009452;DRZ000877;DRZ002262;DRZ012227;DRZ013612 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0000350,FF:0000344,FF:0000339,FF:0000546 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor=biol_rep2 | |||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.94!85.58!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.85!69.31!SIM2;;chr14:29234581..29234601,+!p2@FOXG1!1.52!31.94!FOXG1;;chr1:170633348..170633399,+!p2@PRRX1!1.47!38.57!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.44!236.86!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.43!25.92!FOXG1;;chr1:170632285..170632309,+!p1@PRRX1!1.40!27.12!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.34!93.42!HMGA2;;chr14:29236269..29236285,+!p3@FOXG1!1.28!18.08!FOXG1;;chr17:1959369..1959388,+!p2@HIC1!1.26!45.20!HIC1;;chr3:141087393..141087426,+!p3@ZBTB38!1.24!64.49!ZBTB38;;chr10:94449703..94449718,+!p1@HHEX!1.21!58.46!HHEX;;chr3:141105705..141105770,+!p4@ZBTB38!1.21!18.68!ZBTB38;;chr11:34642612..34642646,+!p1@EHF!1.15!13.26!EHF;;chr8:11561684..11561751,+!p1@GATA4!1.15!13.26!GATA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.13!64.49!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.86!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.12!13.86!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.06!28.33!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!1.05!10.25!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.03!27.12!OSR1;;chr12:66357214..66357233,+!p13@HMGA2!1.03!9.64!HMGA2;;chr17:46655704..46655718,-!p2@HOXB4!1.01!13.86!HOXB4;;chr17:46622205..46622218,-!p3@HOXB2!1.01!10.85!HOXB2;;chr17:46621937..46621966,-!p2@HOXB2!0.99!24.11!HOXB2;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.07!CREB3L1;;chr19:42636586..42636607,-!p1@POU2F2!0.98!24.11!POU2F2;;chr11:61520075..61520136,+!p1@C11orf9!0.97!18.08!C11orf9;;chr12:66218923..66218934,+!p14@HMGA2!0.97!8.44!HMGA2;;chr1:170633058..170633084,+!p5@PRRX1!0.97!8.44!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.95!7.84!SIM2;;chr6:134210243..134210257,+!p1@TCF21!0.92!7.23!TCF21;;chr7:27183291..27183324,-!p1@HOXA5!0.92!7.23!HOXA5;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.51!TWIST2;;chr12:66218573..66218596,+!p7@HMGA2!0.89!10.25!HMGA2;;chr1:170632439..170632465,+!p11@PRRX1!0.88!6.63!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.87!30.74!FOXD1;;chr17:46622070..46622109,-!p1@HOXB2!0.87!15.07!HOXB2;;chr1:151032860..151032918,+!p1@MLLT11!0.86!78.95!MLLT11;;chr17:41622925..41622976,-!p3@ETV4!0.86!9.64!ETV4;;chr4:81118647..81118666,+!p1@PRDM8!0.86!8.44!PRDM8;;chr16:86544113..86544145,+!p1@FOXF1!0.86!7.84!FOXF1;;chr12:66218212..66218244,+!p5@HMGA2!0.85!9.04!HMGA2;;chr7:35293685..35293718,-!p1@TBX20!0.85!6.03!TBX20;;chr9:16705069..16705086,-!p3@BNC2!0.85!6.03!BNC2;;chr17:1958388..1958404,+!p1@HIC1!0.84!39.78!HIC1;;chr20:42543506..42543549,+!p2@TOX2!0.83!14.46!TOX2;;chr15:83953397..83953425,-!p1@BNC1!0.83!6.63!BNC1;;chr5:72743793..72743855,-!p4@FOXD1!0.82!6.63!FOXD1;;chr15:96869255..96869291,+!p6@NR2F2!0.81!10.25!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.81!5.42!HOXB4;;chr1:170632115..170632136,+!p9@PRRX1!0.81!5.42!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.81!5.42!PURA;;chr18:53068911..53068935,-!p4@TCF4!0.80!6.03!TCF4;;chr5:72744445..72744466,-!p2@FOXD1!0.79!9.04!FOXD1;;chr6:45296048..45296082,+!p1@RUNX2!0.79!6.03!RUNX2;;chr15:96876966..96877017,+!p12@NR2F2!0.77!7.23!NR2F2;;chr15:96869206..96869220,+!p21@NR2F2!0.77!4.82!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.77!4.82!HOXB3;;chrY:2803415..2803468,+!p1@ZFY!0.77!4.82!ZFY;;chr12:66358080..66358094,+!p15@HMGA2!0.77!4.82!HMGA2;;chr19:9609272..9609297,-!p1@ZNF560!0.77!4.82!ZNF560;;chr21:38071462..38071474,+!p3@SIM2!0.77!4.82!SIM2;;chr2:102091144..102091183,-!p2@RFX8!0.77!4.82!RFX8;;chr3:141087562..141087594,+!p12@ZBTB38!0.77!4.82!ZBTB38;;chr1:37940170..37940190,+!p1@ZC3H12A!0.74!61.47!ZC3H12A;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.27!FLI1;;chr20:42543441..42543497,+!p1@TOX2!0.74!22.30!TOX2;;chr6:106534192..106534224,+!p1@PRDM1!0.74!13.86!PRDM1;;chr3:157823517..157823562,-!p1@SHOX2!0.74!4.82!SHOX2;;chr6:34204921..34204939,+!p3@HMGA1!0.73!148.87!HMGA1;;chr2:66662249..66662267,+!p2@MEIS1!0.73!18.68!MEIS1;;chr1:221052776..221052799,+!p1@HLX!0.73!8.44!HLX;;chr17:46688334..46688385,-!p1@HOXB7!0.73!6.63!HOXB7;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.80!HIF1A;;chr11:46333934..46333963,+!p5@CREB3L1!0.72!4.22!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!0.72!4.22!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.72!4.22!PRRX1;;chr16:30406423..30406447,+!p4@ZNF48!0.72!4.22!ZNF48;;chr17:41622765..41622821,-!p2@ETV4!0.71!6.63!ETV4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.70!326.66!TAX1BP3;;chr6:21597765..21597779,+!p2@SOX4!0.70!36.76!SOX4;;chr7:26191809..26191890,+!p1@NFE2L3!0.70!22.30!NFE2L3;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.49!DRAP1;;chr8:49833948..49833973,-!p2@SNAI2!0.69!28.33!SNAI2;;chr2:46612334..46612349,+!p6@EPAS1!0.69!5.42!EPAS1;;chr9:35732647..35732678,+!p2@CREB3!0.68!24.11!CREB3;;chr6:1312325..1312340,+!p1@FOXQ1!0.68!6.63!FOXQ1;;chr5:72744562..72744573,-!p3@FOXD1!0.68!4.82!FOXD1;;chr6:21597514..21597578,+!p4@SOX4!0.67!6.63!SOX4;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.03!HMGA2;;chr1:158979792..158979814,+!p2@IFI16!0.66!39.18!IFI16;;chr2:66662281..66662308,+!p1@MEIS1!0.66!13.86!MEIS1;;chr18:3450293..3450304,+!p4@TGIF1!0.66!9.64!TGIF1;;chr2:239756739..239756755,+!p2@TWIST2!0.66!6.63!TWIST2;;chr17:46675420..46675465,-!p3@HOXB6!0.66!4.22!HOXB6;;chr17:41622731..41622764,-!p5@ETV4!0.66!3.62!ETV4;;chr17:46675558..46675577,-!p2@HOXB6!0.66!3.62!HOXB6;;chr1:170632028..170632043,+!p20@PRRX1!0.66!3.62!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.66!3.62!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.66!3.62!HOXA5;;chr8:55370720..55370733,+!p2@SOX17!0.66!3.62!SOX17;;chr14:29236169..29236216,+!p6@FOXG1!0.66!3.62!FOXG1;;chr1:221052840..221052875,+!p4@HLX!0.65!4.22!HLX;;chr7:44143925..44143970,+!p1@AEBP1!0.64!88.60!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.64!53.04!ARID5B;;chr10:94449675..94449694,+!p2@HHEX!0.64!10.25!HHEX;;chr15:57511609..57511651,+!p2@TCF12!0.63!6.03!TCF12;;chr19:31840130..31840160,-!p2@TSHZ3!0.63!5.42!TSHZ3;;chr14:62203749..62203798,+!p5@HIF1A!0.63!5.42!HIF1A;;chr12:53856284..53856299,+!p3@PCBP2!0.62!10.25!PCBP2;;chr11:65686802..65686818,+!p6@DRAP1!0.62!6.03!DRAP1;;chr7:19157248..19157268,-!p1@TWIST1!0.61!9.64!TWIST1;;chr15:96874244..96874259,+!p5@NR2F2!0.61!8.44!NR2F2;;chr19:56152332..56152347,+!p4@ZNF580!0.61!7.84!ZNF580;;chr11:65687158..65687216,+!p4@DRAP1!0.60!20.49!DRAP1;;chr6:34205372..34205412,+!p5@HMGA1!0.60!18.08!HMGA1;;chr7:137564372..137564394,-!p7@CREB3L2!0.60!5.42!CREB3L2;;chr12:125002739..125002756,-!p6@NCOR2!0.60!4.82!NCOR2;;chr15:96869222..96869251,+!p18@NR2F2!0.60!3.62!NR2F2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.01!FOXL1;;chr17:46621146..46621180,-!p10@HOXB2!0.60!3.01!HOXB2;;chr17:46622175..46622186,-!p12@HOXB2!0.60!3.01!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.60!3.01!HOXB6;;chr7:27142290..27142310,-!p1@HOXA2!0.60!3.01!HOXA2;;chr7:27153454..27153469,-!p2@HOXA3!0.60!3.01!HOXA3;;chr8:55370884..55370896,+!p5@SOX17!0.60!3.01!SOX17;;chr1:170632137..170632172,+!p10@PRRX1!0.60!3.01!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.60!3.01!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.60!3.01!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.60!3.01!KDM5D;;chr11:46332679..46332695,+!p12@CREB3L1!0.60!3.01!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.60!3.01!RFX8;;chr2:66666432..66666462,+!p7@MEIS1!0.60!3.01!MEIS1;;chr3:178789522..178789564,-!p2@ZMAT3!0.59!25.92!ZMAT3;;chr15:96874216..96874236,+!p13@NR2F2!0.59!4.82!NR2F2;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.82!HOXB2;;chr15:96869114..96869160,+!p11@NR2F2!0.59!4.22!NR2F2;;chr1:221053049..221053075,+!p3@HLX!0.58!5.42!HLX;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.82!ZFP64;;chr12:125002827..125002855,-!p5@NCOR2!0.57!4.22!NCOR2;;chr14:62162285..62162296,+!p3@HIF1A!0.56!16.88!HIF1A;;chr1:151032922..151032951,+!p2@MLLT11!0.56!4.82!MLLT11;;chr17:41623692..41623715,-!p1@ETV4!0.55!13.26!ETV4;;chrX:66763815..66763854,+!p2@AR!0.55!3.62!AR;;chr2:101591314..101591333,+!p2@NPAS2!0.55!3.01!NPAS2;;chr15:96874145..96874166,+!p7@NR2F2!0.54!5.42!NR2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.54!5.42!HMGA2;;chr13:73636252..73636307,+!p2@KLF5!0.54!3.01!KLF5;;chr17:46622229..46622257,-!p6@HOXB2!0.54!3.01!HOXB2;;chr8:49833978..49833996,-!p1@SNAI2!0.53!63.28!SNAI2;;chr14:73360799..73360817,-!p1@DPF3!0.53!10.25!DPF3;;chr17:41322208..41322250,-!p3@BRCA1!0.53!8.44!BRCA1;;chr7:19157043..19157088,-!p2@TWIST1!0.53!7.23!TWIST1;;chr7:27788205..27788255,+!p2@TAX1BP1!0.53!4.22!TAX1BP1;;chr12:80085061..80085119,-!p6@PAWR!0.53!4.22!PAWR;;chr11:65686776..65686787,+!p9@DRAP1!0.53!3.01!DRAP1;;chr2:60778035..60778060,-!p4@BCL11A!0.53!3.01!BCL11A;;chr2:119604456..119604501,-!p2@EN1!0.53!2.41!EN1;;chr7:1577899..1577943,+!p3@MAFK!0.53!2.41!MAFK;;chr7:27170359..27170381,-!p1@HOXA4!0.53!2.41!HOXA4;;chr1:170632310..170632321,+!p15@PRRX1!0.53!2.41!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.53!2.41!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.53!2.41!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.53!2.41!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.53!2.41!PRRX1;;chr1:221053444..221053473,+!p8@HLX!0.53!2.41!HLX;;chr1:44513995..44514031,+!p1@KLF17!0.53!2.41!KLF17;;chr11:125034640..125034655,+!p1@PKNOX2!0.53!2.41!PKNOX2;;chr11:46333979..46333991,+!p7@CREB3L1!0.53!2.41!CREB3L1;;chr12:54394309..54394336,+!p2@HOXC9!0.53!2.41!HOXC9;;chr16:31076332..31076388,-!p3@ZNF668!0.53!2.41!ZNF668;;chr17:46691732..46691766,-!p4@HOXB8!0.53!2.41!HOXB8;;chr19:31840168..31840186,-!p6@TSHZ3!0.53!2.41!TSHZ3;;chr11:65686732..65686756,+!p2@DRAP1!0.52!12.05!DRAP1;;chr3:71007344..71007348,-!p6@FOXP1!0.52!11.45!FOXP1;;chr5:321810..321877,+!p1@AHRR!0.52!9.04!AHRR;;chr1:151032782..151032801,+!p4@MLLT11!0.52!5.42!MLLT11;;chr12:26277929..26277955,-!p3@BHLHE41!0.52!3.62!BHLHE41;;chr14:35872926..35872951,-!p4@NFKBIA!0.52!3.62!NFKBIA;;chr9:35732514..35732530,+!p5@CREB3!0.52!3.62!CREB3;;chr2:238536207..238536290,+!p2@LRRFIP1!0.51!28.33!LRRFIP1;;chr10:35484804..35484902,+!p2@CREM!0.51!10.85!CREM;;chr12:96588368..96588394,+!p3@ELK3!0.51!7.23!ELK3;;chr14:62203595..62203676,+!p4@HIF1A!0.51!4.82!HIF1A;;chr2:121493492..121493537,+!p2@GLI2!0.51!4.22!GLI2;;chr3:168864315..168864339,-!p2@MECOM!0.51!4.22!M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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.94!85.58!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.85!69.31!SIM2;;chr14:29234581..29234601,+!p2@FOXG1!1.52!31.94!FOXG1;;chr1:170633348..170633399,+!p2@PRRX1!1.47!38.57!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.44!236.86!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.43!25.92!FOXG1;;chr1:170632285..170632309,+!p1@PRRX1!1.40!27.12!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.34!93.42!HMGA2;;chr14:29236269..29236285,+!p3@FOXG1!1.28!18.08!FOXG1;;chr17:1959369..1959388,+!p2@HIC1!1.26!45.20!HIC1;;chr3:141087393..141087426,+!p3@ZBTB38!1.24!64.49!ZBTB38;;chr10:94449703..94449718,+!p1@HHEX!1.21!58.46!HHEX;;chr3:141105705..141105770,+!p4@ZBTB38!1.21!18.68!ZBTB38;;chr11:34642612..34642646,+!p1@EHF!1.15!13.26!EHF;;chr8:11561684..11561751,+!p1@GATA4!1.15!13.26!GATA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.13!64.49!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.86!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.12!13.86!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.06!28.33!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!1.05!10.25!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.03!27.12!OSR1;;chr12:66357214..66357233,+!p13@HMGA2!1.03!9.64!HMGA2;;chr17:46655704..46655718,-!p2@HOXB4!1.01!13.86!HOXB4;;chr17:46622205..46622218,-!p3@HOXB2!1.01!10.85!HOXB2;;chr17:46621937..46621966,-!p2@HOXB2!0.99!24.11!HOXB2;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.07!CREB3L1;;chr19:42636586..42636607,-!p1@POU2F2!0.98!24.11!POU2F2;;chr11:61520075..61520136,+!p1@C11orf9!0.97!18.08!C11orf9;;chr12:66218923..66218934,+!p14@HMGA2!0.97!8.44!HMGA2;;chr1:170633058..170633084,+!p5@PRRX1!0.97!8.44!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.95!7.84!SIM2;;chr6:134210243..134210257,+!p1@TCF21!0.92!7.23!TCF21;;chr7:27183291..27183324,-!p1@HOXA5!0.92!7.23!HOXA5;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.51!TWIST2;;chr12:66218573..66218596,+!p7@HMGA2!0.89!10.25!HMGA2;;chr1:170632439..170632465,+!p11@PRRX1!0.88!6.63!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.87!30.74!FOXD1;;chr17:46622070..46622109,-!p1@HOXB2!0.87!15.07!HOXB2;;chr1:151032860..151032918,+!p1@MLLT11!0.86!78.95!MLLT11;;chr17:41622925..41622976,-!p3@ETV4!0.86!9.64!ETV4;;chr4:81118647..81118666,+!p1@PRDM8!0.86!8.44!PRDM8;;chr16:86544113..86544145,+!p1@FOXF1!0.86!7.84!FOXF1;;chr12:66218212..66218244,+!p5@HMGA2!0.85!9.04!HMGA2;;chr7:35293685..35293718,-!p1@TBX20!0.85!6.03!TBX20;;chr9:16705069..16705086,-!p3@BNC2!0.85!6.03!BNC2;;chr17:1958388..1958404,+!p1@HIC1!0.84!39.78!HIC1;;chr20:42543506..42543549,+!p2@TOX2!0.83!14.46!TOX2;;chr15:83953397..83953425,-!p1@BNC1!0.83!6.63!BNC1;;chr5:72743793..72743855,-!p4@FOXD1!0.82!6.63!FOXD1;;chr15:96869255..96869291,+!p6@NR2F2!0.81!10.25!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.81!5.42!HOXB4;;chr1:170632115..170632136,+!p9@PRRX1!0.81!5.42!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.81!5.42!PURA;;chr18:53068911..53068935,-!p4@TCF4!0.80!6.03!TCF4;;chr5:72744445..72744466,-!p2@FOXD1!0.79!9.04!FOXD1;;chr6:45296048..45296082,+!p1@RUNX2!0.79!6.03!RUNX2;;chr15:96876966..96877017,+!p12@NR2F2!0.77!7.23!NR2F2;;chr15:96869206..96869220,+!p21@NR2F2!0.77!4.82!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.77!4.82!HOXB3;;chrY:2803415..2803468,+!p1@ZFY!0.77!4.82!ZFY;;chr12:66358080..66358094,+!p15@HMGA2!0.77!4.82!HMGA2;;chr19:9609272..9609297,-!p1@ZNF560!0.77!4.82!ZNF560;;chr21:38071462..38071474,+!p3@SIM2!0.77!4.82!SIM2;;chr2:102091144..102091183,-!p2@RFX8!0.77!4.82!RFX8;;chr3:141087562..141087594,+!p12@ZBTB38!0.77!4.82!ZBTB38;;chr1:37940170..37940190,+!p1@ZC3H12A!0.74!61.47!ZC3H12A;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.27!FLI1;;chr20:42543441..42543497,+!p1@TOX2!0.74!22.30!TOX2;;chr6:106534192..106534224,+!p1@PRDM1!0.74!13.86!PRDM1;;chr3:157823517..157823562,-!p1@SHOX2!0.74!4.82!SHOX2;;chr6:34204921..34204939,+!p3@HMGA1!0.73!148.87!HMGA1;;chr2:66662249..66662267,+!p2@MEIS1!0.73!18.68!MEIS1;;chr1:221052776..221052799,+!p1@HLX!0.73!8.44!HLX;;chr17:46688334..46688385,-!p1@HOXB7!0.73!6.63!HOXB7;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.80!HIF1A;;chr11:46333934..46333963,+!p5@CREB3L1!0.72!4.22!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!0.72!4.22!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.72!4.22!PRRX1;;chr16:30406423..30406447,+!p4@ZNF48!0.72!4.22!ZNF48;;chr17:41622765..41622821,-!p2@ETV4!0.71!6.63!ETV4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.70!326.66!TAX1BP3;;chr6:21597765..21597779,+!p2@SOX4!0.70!36.76!SOX4;;chr7:26191809..26191890,+!p1@NFE2L3!0.70!22.30!NFE2L3;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.49!DRAP1;;chr8:49833948..49833973,-!p2@SNAI2!0.69!28.33!SNAI2;;chr2:46612334..46612349,+!p6@EPAS1!0.69!5.42!EPAS1;;chr9:35732647..35732678,+!p2@CREB3!0.68!24.11!CREB3;;chr6:1312325..1312340,+!p1@FOXQ1!0.68!6.63!FOXQ1;;chr5:72744562..72744573,-!p3@FOXD1!0.68!4.82!FOXD1;;chr6:21597514..21597578,+!p4@SOX4!0.67!6.63!SOX4;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.03!HMGA2;;chr1:158979792..158979814,+!p2@IFI16!0.66!39.18!IFI16;;chr2:66662281..66662308,+!p1@MEIS1!0.66!13.86!MEIS1;;chr18:3450293..3450304,+!p4@TGIF1!0.66!9.64!TGIF1;;chr2:239756739..239756755,+!p2@TWIST2!0.66!6.63!TWIST2;;chr17:46675420..46675465,-!p3@HOXB6!0.66!4.22!HOXB6;;chr17:41622731..41622764,-!p5@ETV4!0.66!3.62!ETV4;;chr17:46675558..46675577,-!p2@HOXB6!0.66!3.62!HOXB6;;chr1:170632028..170632043,+!p20@PRRX1!0.66!3.62!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.66!3.62!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.66!3.62!HOXA5;;chr8:55370720..55370733,+!p2@SOX17!0.66!3.62!SOX17;;chr14:29236169..29236216,+!p6@FOXG1!0.66!3.62!FOXG1;;chr1:221052840..221052875,+!p4@HLX!0.65!4.22!HLX;;chr7:44143925..44143970,+!p1@AEBP1!0.64!88.60!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.64!53.04!ARID5B;;chr10:94449675..94449694,+!p2@HHEX!0.64!10.25!HHEX;;chr15:57511609..57511651,+!p2@TCF12!0.63!6.03!TCF12;;chr19:31840130..31840160,-!p2@TSHZ3!0.63!5.42!TSHZ3;;chr14:62203749..62203798,+!p5@HIF1A!0.63!5.42!HIF1A;;chr12:53856284..53856299,+!p3@PCBP2!0.62!10.25!PCBP2;;chr11:65686802..65686818,+!p6@DRAP1!0.62!6.03!DRAP1;;chr7:19157248..19157268,-!p1@TWIST1!0.61!9.64!TWIST1;;chr15:96874244..96874259,+!p5@NR2F2!0.61!8.44!NR2F2;;chr19:56152332..56152347,+!p4@ZNF580!0.61!7.84!ZNF580;;chr11:65687158..65687216,+!p4@DRAP1!0.60!20.49!DRAP1;;chr6:34205372..34205412,+!p5@HMGA1!0.60!18.08!HMGA1;;chr7:137564372..137564394,-!p7@CREB3L2!0.60!5.42!CREB3L2;;chr12:125002739..125002756,-!p6@NCOR2!0.60!4.82!NCOR2;;chr15:96869222..96869251,+!p18@NR2F2!0.60!3.62!NR2F2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.01!FOXL1;;chr17:46621146..46621180,-!p10@HOXB2!0.60!3.01!HOXB2;;chr17:46622175..46622186,-!p12@HOXB2!0.60!3.01!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.60!3.01!HOXB6;;chr7:27142290..27142310,-!p1@HOXA2!0.60!3.01!HOXA2;;chr7:27153454..27153469,-!p2@HOXA3!0.60!3.01!HOXA3;;chr8:55370884..55370896,+!p5@SOX17!0.60!3.01!SOX17;;chr1:170632137..170632172,+!p10@PRRX1!0.60!3.01!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.60!3.01!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.60!3.01!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.60!3.01!KDM5D;;chr11:46332679..46332695,+!p12@CREB3L1!0.60!3.01!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.60!3.01!RFX8;;chr2:66666432..66666462,+!p7@MEIS1!0.60!3.01!MEIS1;;chr3:178789522..178789564,-!p2@ZMAT3!0.59!25.92!ZMAT3;;chr15:96874216..96874236,+!p13@NR2F2!0.59!4.82!NR2F2;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.82!HOXB2;;chr15:96869114..96869160,+!p11@NR2F2!0.59!4.22!NR2F2;;chr1:221053049..221053075,+!p3@HLX!0.58!5.42!HLX;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.82!ZFP64;;chr12:125002827..125002855,-!p5@NCOR2!0.57!4.22!NCOR2;;chr14:62162285..62162296,+!p3@HIF1A!0.56!16.88!HIF1A;;chr1:151032922..151032951,+!p2@MLLT11!0.56!4.82!MLLT11;;chr17:41623692..41623715,-!p1@ETV4!0.55!13.26!ETV4;;chrX:66763815..66763854,+!p2@AR!0.55!3.62!AR;;chr2:101591314..101591333,+!p2@NPAS2!0.55!3.01!NPAS2;;chr15:96874145..96874166,+!p7@NR2F2!0.54!5.42!NR2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.54!5.42!HMGA2;;chr13:73636252..73636307,+!p2@KLF5!0.54!3.01!KLF5;;chr17:46622229..46622257,-!p6@HOXB2!0.54!3.01!HOXB2;;chr8:49833978..49833996,-!p1@SNAI2!0.53!63.28!SNAI2;;chr14:73360799..73360817,-!p1@DPF3!0.53!10.25!DPF3;;chr17:41322208..41322250,-!p3@BRCA1!0.53!8.44!BRCA1;;chr7:19157043..19157088,-!p2@TWIST1!0.53!7.23!TWIST1;;chr7:27788205..27788255,+!p2@TAX1BP1!0.53!4.22!TAX1BP1;;chr12:80085061..80085119,-!p6@PAWR!0.53!4.22!PAWR;;chr11:65686776..65686787,+!p9@DRAP1!0.53!3.01!DRAP1;;chr2:60778035..60778060,-!p4@BCL11A!0.53!3.01!BCL11A;;chr2:119604456..119604501,-!p2@EN1!0.53!2.41!EN1;;chr7:1577899..1577943,+!p3@MAFK!0.53!2.41!MAFK;;chr7:27170359..27170381,-!p1@HOXA4!0.53!2.41!HOXA4;;chr1:170632310..170632321,+!p15@PRRX1!0.53!2.41!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.53!2.41!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.53!2.41!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.53!2.41!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.53!2.41!PRRX1;;chr1:221053444..221053473,+!p8@HLX!0.53!2.41!HLX;;chr1:44513995..44514031,+!p1@KLF17!0.53!2.41!KLF17;;chr11:125034640..125034655,+!p1@PKNOX2!0.53!2.41!PKNOX2;;chr11:46333979..46333991,+!p7@CREB3L1!0.53!2.41!CREB3L1;;chr12:54394309..54394336,+!p2@HOXC9!0.53!2.41!HOXC9;;chr16:31076332..31076388,-!p3@ZNF668!0.53!2.41!ZNF668;;chr17:46691732..46691766,-!p4@HOXB8!0.53!2.41!HOXB8;;chr19:31840168..31840186,-!p6@TSHZ3!0.53!2.41!TSHZ3;;chr11:65686732..65686756,+!p2@DRAP1!0.52!12.05!DRAP1;;chr3:71007344..71007348,-!p6@FOXP1!0.52!11.45!FOXP1;;chr5:321810..321877,+!p1@AHRR!0.52!9.04!AHRR;;chr1:151032782..151032801,+!p4@MLLT11!0.52!5.42!MLLT11;;chr12:26277929..26277955,-!p3@BHLHE41!0.52!3.62!BHLHE41;;chr14:35872926..35872951,-!p4@NFKBIA!0.52!3.62!NFKBIA;;chr9:35732514..35732530,+!p5@CREB3!0.52!3.62!CREB3;;chr2:238536207..238536290,+!p2@LRRFIP1!0.51!28.33!LRRFIP1;;chr10:35484804..35484902,+!p2@CREM!0.51!10.85!CREM;;chr12:96588368..96588394,+!p3@ELK3!0.51!7.23!ELK3;;chr14:62203595..62203676,+!p4@HIF1A!0.51!4.82!HIF1A;;chr2:121493492..121493537,+!p2@GLI2!0.51!4.22!GLI2;;chr3:168864315..168864339,-!p2@MECOM!0.51!4.22!M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| ||
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|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000339,FF:0000546,FF:12740-135I4 | |fonse_treatment_closure=EFO:0000369,FF:0000339,FF:0000546,FF:12740-135I4 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK2%2529.CNhs13358.12740-135I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK2%2529.CNhs13358.12740-135I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK2%2529.CNhs13358.12740-135I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK2%2529.CNhs13358.12740-135I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK2%2529.CNhs13358.12740-135I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12740-135I4 | |id=FF:12740-135I4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000546 | ||
|name=Aortic smooth muscle cell response to FGF2 | |is_obsolete= | ||
|library_id=CNhs13358 | |||
|library_id_phase_based=2:CNhs13358 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12740 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12740 | |||
|name=Aortic smooth muscle cell response to FGF2 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13358,LSID1022,release013,COMPLETED | |profile_hcage=CNhs13358,LSID1022,release013,COMPLETED | ||
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|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=135 | |rna_box=135 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=4.01 | |rna_weight_ug=4.01 | ||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition=Aortic smooth muscle cell response to fibroblast growth factor 2 | |sample_experimental_condition=Aortic smooth muscle cell response to fibroblast growth factor 2 | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.84878391893726e-208!GO:0005737;cytoplasm;4.70302806347351e-194!GO:0043226;organelle;1.49758488893001e-160!GO:0043229;intracellular organelle;3.70339371637035e-160!GO:0043231;intracellular membrane-bound organelle;9.40457122470038e-157!GO:0043227;membrane-bound organelle;1.49424935053333e-156!GO:0044444;cytoplasmic part;8.705858278955e-145!GO:0044422;organelle part;1.28648823801485e-126!GO:0044446;intracellular organelle part;4.48377838745149e-125!GO:0032991;macromolecular complex;5.21946197292347e-93!GO:0030529;ribonucleoprotein complex;2.30093919521088e-87!GO:0005515;protein binding;6.12402115352878e-78!GO:0044237;cellular metabolic process;2.87951677668947e-73!GO:0044238;primary metabolic process;2.9460043898638e-72!GO:0043233;organelle lumen;3.7823728347558e-67!GO:0031974;membrane-enclosed lumen;3.7823728347558e-67!GO:0043170;macromolecule metabolic process;1.00732838432988e-66!GO:0005739;mitochondrion;3.12837959749401e-66!GO:0003723;RNA binding;3.11671889662729e-62!GO:0044428;nuclear part;1.11629900365132e-57!GO:0005840;ribosome;2.98468622590391e-54!GO:0031090;organelle membrane;1.19113448724034e-52!GO:0006412;translation;5.5265488321186e-52!GO:0019538;protein metabolic process;1.18648855576552e-51!GO:0003735;structural constituent of ribosome;2.19891365592418e-48!GO:0044260;cellular macromolecule metabolic process;1.15266869883409e-47!GO:0044267;cellular protein metabolic process;1.42068882669221e-46!GO:0005634;nucleus;3.41982063224447e-46!GO:0043234;protein complex;2.74412153538122e-45!GO:0044429;mitochondrial part;2.74674605705808e-45!GO:0016043;cellular component organization and biogenesis;3.0838379549446e-45!GO:0009058;biosynthetic process;6.14355359345327e-44!GO:0006396;RNA processing;1.62857762008654e-43!GO:0005829;cytosol;3.9956721564443e-43!GO:0033279;ribosomal subunit;1.60893125960473e-42!GO:0015031;protein transport;2.23487261859246e-42!GO:0009059;macromolecule biosynthetic process;6.65999860466277e-42!GO:0033036;macromolecule localization;7.15918883588404e-42!GO:0044249;cellular biosynthetic process;3.21088543485826e-41!GO:0045184;establishment of protein localization;3.33205042445126e-39!GO:0008104;protein localization;6.6446910223742e-39!GO:0031981;nuclear lumen;4.81936473388098e-38!GO:0031967;organelle envelope;1.90379550844233e-37!GO:0031975;envelope;4.26407290630192e-37!GO:0016071;mRNA metabolic process;1.04600429075325e-33!GO:0008380;RNA splicing;3.97171584155673e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.99893548561813e-32!GO:0010467;gene expression;2.6562300648177e-31!GO:0046907;intracellular transport;3.53702280635342e-31!GO:0043283;biopolymer metabolic process;6.55435242648066e-31!GO:0005740;mitochondrial envelope;3.12396617970959e-30!GO:0006397;mRNA processing;4.74846060280099e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.4385184375632e-29!GO:0031966;mitochondrial membrane;3.17264906971006e-28!GO:0006886;intracellular protein transport;5.55358728854702e-28!GO:0065003;macromolecular complex assembly;8.27906802157124e-28!GO:0019866;organelle inner membrane;2.57156775170329e-27!GO:0044445;cytosolic part;1.0078793430607e-26!GO:0005743;mitochondrial inner membrane;2.99964659350524e-26!GO:0006996;organelle organization and biogenesis;8.630877830715e-26!GO:0022607;cellular component assembly;2.22645139185348e-24!GO:0006119;oxidative phosphorylation;4.93229937067346e-24!GO:0043228;non-membrane-bound organelle;6.33908311104412e-24!GO:0043232;intracellular non-membrane-bound organelle;6.33908311104412e-24!GO:0005681;spliceosome;8.98723273711305e-24!GO:0005654;nucleoplasm;1.52744308489666e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.03456492366213e-23!GO:0006457;protein folding;2.87941553761195e-23!GO:0005783;endoplasmic reticulum;5.0379020092379e-23!GO:0015934;large ribosomal subunit;7.27401322406644e-22!GO:0044455;mitochondrial membrane part;7.27401322406644e-22!GO:0015935;small ribosomal subunit;1.11164484646667e-21!GO:0012505;endomembrane system;4.36708943376116e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.58330008222725e-21!GO:0016462;pyrophosphatase activity;9.8597262544293e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.12373571706485e-20!GO:0044451;nucleoplasm part;5.42732100631513e-20!GO:0017111;nucleoside-triphosphatase activity;8.39536943532884e-20!GO:0044432;endoplasmic reticulum part;3.62442830071781e-19!GO:0051649;establishment of cellular localization;3.765344779544e-19!GO:0051641;cellular localization;4.02390769054112e-19!GO:0048770;pigment granule;9.03734861682832e-19!GO:0042470;melanosome;9.03734861682832e-19!GO:0022618;protein-RNA complex assembly;1.46588014185686e-18!GO:0031980;mitochondrial lumen;3.94848620660815e-18!GO:0005759;mitochondrial matrix;3.94848620660815e-18!GO:0005746;mitochondrial respiratory chain;5.69523773916282e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.39674737848159e-17!GO:0005794;Golgi apparatus;6.12095949285125e-17!GO:0000502;proteasome complex (sensu Eukaryota);7.85872229598933e-17!GO:0051186;cofactor metabolic process;1.04930471178696e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.25565133963216e-16!GO:0000166;nucleotide binding;2.3362756726732e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.21550446631889e-16!GO:0003954;NADH dehydrogenase activity;3.21550446631889e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.21550446631889e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.50229765306305e-16!GO:0008135;translation factor activity, nucleic acid binding;8.25363858705625e-16!GO:0008134;transcription factor binding;1.36722934688027e-15!GO:0051082;unfolded protein binding;1.48365988475121e-15!GO:0043285;biopolymer catabolic process;2.51094713742488e-15!GO:0016874;ligase activity;2.85467563492967e-15!GO:0048193;Golgi vesicle transport;5.73858934777095e-15!GO:0044265;cellular macromolecule catabolic process;6.88486267549553e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.30448679571977e-15!GO:0005761;mitochondrial ribosome;7.54046200168166e-15!GO:0000313;organellar ribosome;7.54046200168166e-15!GO:0006512;ubiquitin cycle;7.5907799062892e-15!GO:0005730;nucleolus;9.93987571516046e-15!GO:0009057;macromolecule catabolic process;1.42951658653001e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.62536539269756e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.64298380433199e-14!GO:0045271;respiratory chain complex I;2.64298380433199e-14!GO:0005747;mitochondrial respiratory chain complex I;2.64298380433199e-14!GO:0006259;DNA metabolic process;2.81958986326873e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.4033926642881e-14!GO:0042773;ATP synthesis coupled electron transport;3.4033926642881e-14!GO:0019941;modification-dependent protein catabolic process;4.99464768188652e-14!GO:0043632;modification-dependent macromolecule catabolic process;4.99464768188652e-14!GO:0044257;cellular protein catabolic process;5.38470821422439e-14!GO:0030163;protein catabolic process;5.54750640009192e-14!GO:0016192;vesicle-mediated transport;6.19792290352348e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.98470711760918e-14!GO:0006605;protein targeting;8.15938898692446e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.38490075965129e-14!GO:0006511;ubiquitin-dependent protein catabolic process;8.70447066144914e-14!GO:0005789;endoplasmic reticulum membrane;2.8436019635401e-13!GO:0044248;cellular catabolic process;3.1343141965375e-13!GO:0006732;coenzyme metabolic process;4.80344994713668e-13!GO:0003743;translation initiation factor activity;4.9963217383657e-13!GO:0009055;electron carrier activity;7.36675759302176e-13!GO:0003676;nucleic acid binding;1.3766723875696e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.85504776484386e-12!GO:0000375;RNA splicing, via transesterification reactions;1.85504776484386e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.85504776484386e-12!GO:0006413;translational initiation;3.64541825837907e-12!GO:0012501;programmed cell death;4.38082930012676e-12!GO:0005793;ER-Golgi intermediate compartment;7.92462333811638e-12!GO:0006915;apoptosis;8.28155685224692e-12!GO:0042254;ribosome biogenesis and assembly;1.09349406751036e-11!GO:0009259;ribonucleotide metabolic process;1.26294394540562e-11!GO:0043412;biopolymer modification;1.33639272771054e-11!GO:0017076;purine nucleotide binding;2.826398464936e-11!GO:0006163;purine nucleotide metabolic process;3.41072944304533e-11!GO:0032553;ribonucleotide binding;3.72934114144071e-11!GO:0032555;purine ribonucleotide binding;3.72934114144071e-11!GO:0009150;purine ribonucleotide metabolic process;6.35781579224828e-11!GO:0048523;negative regulation of cellular process;1.06354789516769e-10!GO:0008219;cell death;1.11101900130985e-10!GO:0016265;death;1.11101900130985e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.29816723782586e-10!GO:0006164;purine nucleotide biosynthetic process;2.0303526189076e-10!GO:0006464;protein modification process;2.08087206514118e-10!GO:0009260;ribonucleotide biosynthetic process;2.60629880583607e-10!GO:0016070;RNA metabolic process;2.77156313419076e-10!GO:0009152;purine ribonucleotide biosynthetic process;3.61279917990261e-10!GO:0006446;regulation of translational initiation;5.0684613091032e-10!GO:0003712;transcription cofactor activity;5.50837181770948e-10!GO:0007049;cell cycle;6.76189797155243e-10!GO:0009199;ribonucleoside triphosphate metabolic process;7.17810437021288e-10!GO:0016887;ATPase activity;7.60088551928226e-10!GO:0008565;protein transporter activity;8.71788681863852e-10!GO:0016604;nuclear body;1.0613431575062e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.11023281935757e-09!GO:0009141;nucleoside triphosphate metabolic process;1.15815601506372e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.36551396394247e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.36551396394247e-09!GO:0042623;ATPase activity, coupled;1.81008262905982e-09!GO:0003924;GTPase activity;2.59941699248276e-09!GO:0048519;negative regulation of biological process;3.50764529619492e-09!GO:0015986;ATP synthesis coupled proton transport;4.52862923857908e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.52862923857908e-09!GO:0009142;nucleoside triphosphate biosynthetic process;5.62411105251073e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.62411105251073e-09!GO:0051246;regulation of protein metabolic process;7.2942854480889e-09!GO:0046034;ATP metabolic process;9.53341176671284e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.08900161413246e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.08900161413246e-08!GO:0019829;cation-transporting ATPase activity;1.25809964074614e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.46444895621646e-08!GO:0008639;small protein conjugating enzyme activity;1.49389688534429e-08!GO:0009060;aerobic respiration;1.55676635150376e-08!GO:0016491;oxidoreductase activity;1.55817882332111e-08!GO:0009056;catabolic process;1.63983410568466e-08!GO:0019787;small conjugating protein ligase activity;1.73717865465177e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.0568268976116e-08!GO:0005635;nuclear envelope;2.1850041844757e-08!GO:0051188;cofactor biosynthetic process;2.23787040841475e-08!GO:0004842;ubiquitin-protein ligase activity;2.533657759442e-08!GO:0005788;endoplasmic reticulum lumen;2.87789944646968e-08!GO:0043687;post-translational protein modification;3.000543704611e-08!GO:0043067;regulation of programmed cell death;3.05454505688284e-08!GO:0005524;ATP binding;3.10809309785189e-08!GO:0031965;nuclear membrane;3.7816670163826e-08!GO:0006913;nucleocytoplasmic transport;3.9936339889249e-08!GO:0006399;tRNA metabolic process;4.11035422524496e-08!GO:0016607;nuclear speck;4.16900629193199e-08!GO:0042981;regulation of apoptosis;4.51341681398369e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.9885907406994e-08!GO:0006754;ATP biosynthetic process;6.11945144833281e-08!GO:0006753;nucleoside phosphate metabolic process;6.11945144833281e-08!GO:0045333;cellular respiration;6.28378918573782e-08!GO:0030554;adenyl nucleotide binding;6.30401720420271e-08!GO:0032559;adenyl ribonucleotide binding;6.72879768517971e-08!GO:0051169;nuclear transport;7.20427335234852e-08!GO:0044453;nuclear membrane part;8.03071551268148e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.35607364452254e-08!GO:0044431;Golgi apparatus part;8.83070834353821e-08!GO:0043069;negative regulation of programmed cell death;8.86149973093306e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.16397513191296e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.2900042812607e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.32551206715943e-07!GO:0005768;endosome;1.32551206715943e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.44224606638176e-07!GO:0016881;acid-amino acid ligase activity;1.52048339594944e-07!GO:0017038;protein import;1.87023428231914e-07!GO:0030120;vesicle coat;1.87023428231914e-07!GO:0030662;coated vesicle membrane;1.87023428231914e-07!GO:0043066;negative regulation of apoptosis;1.93740242096141e-07!GO:0006974;response to DNA damage stimulus;1.93740242096141e-07!GO:0006364;rRNA processing;2.26042201628973e-07!GO:0006461;protein complex assembly;2.3786290575856e-07!GO:0009117;nucleotide metabolic process;2.60570697586892e-07!GO:0008026;ATP-dependent helicase activity;2.91026430952395e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.99793035300108e-07!GO:0016072;rRNA metabolic process;3.17014607886296e-07!GO:0004386;helicase activity;3.6737043731447e-07!GO:0006366;transcription from RNA polymerase II promoter;3.72946811226102e-07!GO:0006323;DNA packaging;3.744824442791e-07!GO:0006916;anti-apoptosis;3.95930228642305e-07!GO:0005667;transcription factor complex;4.42640115951212e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.30623467350078e-07!GO:0048475;coated membrane;6.70318227197638e-07!GO:0030117;membrane coat;6.70318227197638e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.70318227197638e-07!GO:0004812;aminoacyl-tRNA ligase activity;6.70318227197638e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.70318227197638e-07!GO:0016853;isomerase activity;8.54660895297059e-07!GO:0006099;tricarboxylic acid cycle;8.90753512719782e-07!GO:0046356;acetyl-CoA catabolic process;8.90753512719782e-07!GO:0016787;hydrolase activity;9.72642916013142e-07!GO:0043038;amino acid activation;9.90820962405541e-07!GO:0006418;tRNA aminoacylation for protein translation;9.90820962405541e-07!GO:0043039;tRNA aminoacylation;9.90820962405541e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.00803532076831e-06!GO:0007005;mitochondrion organization and biogenesis;1.085040631945e-06!GO:0006091;generation of precursor metabolites and energy;1.09007049978198e-06!GO:0065004;protein-DNA complex assembly;1.09858005534913e-06!GO:0009108;coenzyme biosynthetic process;1.10409810617298e-06!GO:0065002;intracellular protein transport across a membrane;1.20157012250109e-06!GO:0051726;regulation of cell cycle;1.29597128245367e-06!GO:0045259;proton-transporting ATP synthase complex;1.31520069037897e-06!GO:0022402;cell cycle process;1.32954593918898e-06!GO:0051187;cofactor catabolic process;1.59634253337075e-06!GO:0000074;regulation of progression through cell cycle;1.66057262983144e-06!GO:0005773;vacuole;1.92728024405648e-06!GO:0006084;acetyl-CoA metabolic process;2.02494678599337e-06!GO:0031988;membrane-bound vesicle;2.0554967475269e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.34910358084515e-06!GO:0048522;positive regulation of cellular process;2.53182445604232e-06!GO:0051276;chromosome organization and biogenesis;2.63323812658457e-06!GO:0016859;cis-trans isomerase activity;2.9862029844941e-06!GO:0031252;leading edge;3.1882953249983e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.2742397609542e-06!GO:0006752;group transfer coenzyme metabolic process;3.41414219342595e-06!GO:0005643;nuclear pore;3.6501337795599e-06!GO:0005525;GTP binding;3.78231954629492e-06!GO:0009109;coenzyme catabolic process;4.42624325318335e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.04437276887118e-06!GO:0005762;mitochondrial large ribosomal subunit;5.05131629496854e-06!GO:0000315;organellar large ribosomal subunit;5.05131629496854e-06!GO:0006333;chromatin assembly or disassembly;5.80101626559869e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.01357771308668e-06!GO:0050794;regulation of cellular process;6.05169530442339e-06!GO:0000139;Golgi membrane;6.35834364452548e-06!GO:0032446;protein modification by small protein conjugation;6.93557934085951e-06!GO:0005770;late endosome;7.00127994511838e-06!GO:0006281;DNA repair;7.39261801934027e-06!GO:0000245;spliceosome assembly;7.64732157573125e-06!GO:0044440;endosomal part;8.03302838496841e-06!GO:0010008;endosome membrane;8.03302838496841e-06!GO:0045454;cell redox homeostasis;1.05168650175441e-05!GO:0031982;vesicle;1.15683874260912e-05!GO:0016567;protein ubiquitination;1.18168746289245e-05!GO:0003713;transcription coactivator activity;1.48588434301237e-05!GO:0031410;cytoplasmic vesicle;1.53512116521577e-05!GO:0006613;cotranslational protein targeting to membrane;1.82162925584268e-05!GO:0051789;response to protein stimulus;1.88368658379099e-05!GO:0006986;response to unfolded protein;1.88368658379099e-05!GO:0004298;threonine endopeptidase activity;1.89323504915696e-05!GO:0000278;mitotic cell cycle;1.91271344214151e-05!GO:0005798;Golgi-associated vesicle;1.9781907435578e-05!GO:0046930;pore complex;1.98658567733561e-05!GO:0050657;nucleic acid transport;2.5190123104195e-05!GO:0051236;establishment of RNA localization;2.5190123104195e-05!GO:0050658;RNA transport;2.5190123104195e-05!GO:0006403;RNA localization;2.57023293552125e-05!GO:0019843;rRNA binding;2.60215298855852e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.61763530759892e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.81481042591666e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.86448729555345e-05!GO:0015399;primary active transmembrane transporter activity;2.86448729555345e-05!GO:0000323;lytic vacuole;2.90621999605821e-05!GO:0005764;lysosome;2.90621999605821e-05!GO:0045786;negative regulation of progression through cell cycle;2.92677930242192e-05!GO:0009719;response to endogenous stimulus;2.94097977102604e-05!GO:0005905;coated pit;3.68729279873902e-05!GO:0032561;guanyl ribonucleotide binding;3.72056053403909e-05!GO:0019001;guanyl nucleotide binding;3.72056053403909e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.8988854434559e-05!GO:0003724;RNA helicase activity;4.15790278714957e-05!GO:0016563;transcription activator activity;4.3460548552392e-05!GO:0008654;phospholipid biosynthetic process;4.98970061981582e-05!GO:0003714;transcription corepressor activity;5.90831062837169e-05!GO:0030867;rough endoplasmic reticulum membrane;6.18974784887936e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.2191994775184e-05!GO:0016564;transcription repressor activity;6.80770416205011e-05!GO:0005769;early endosome;7.32824848640498e-05!GO:0016568;chromatin modification;8.31193283697839e-05!GO:0051170;nuclear import;8.45380373003048e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;8.51214997339757e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.29907539952728e-05!GO:0003697;single-stranded DNA binding;9.77732566867986e-05!GO:0000151;ubiquitin ligase complex;9.77732566867986e-05!GO:0006793;phosphorus metabolic process;0.00010093206306902!GO:0006796;phosphate metabolic process;0.00010093206306902!GO:0016740;transferase activity;0.000104629819401154!GO:0000785;chromatin;0.000114504007059388!GO:0031324;negative regulation of cellular metabolic process;0.000119246305337329!GO:0043566;structure-specific DNA binding;0.000120411499344739!GO:0043623;cellular protein complex assembly;0.000124112473314022!GO:0043021;ribonucleoprotein binding;0.000125379843946386!GO:0006606;protein import into nucleus;0.000129213535276531!GO:0005694;chromosome;0.00013797285647933!GO:0051427;hormone receptor binding;0.000140982091767932!GO:0006334;nucleosome assembly;0.000147268793302016!GO:0008361;regulation of cell size;0.000181794060704663!GO:0000314;organellar small ribosomal subunit;0.000181794060704663!GO:0005763;mitochondrial small ribosomal subunit;0.000181794060704663!GO:0009165;nucleotide biosynthetic process;0.000182988657409575!GO:0030029;actin filament-based process;0.000196649020317156!GO:0016310;phosphorylation;0.000201088080969741!GO:0019867;outer membrane;0.000209357365754366!GO:0031968;organelle outer membrane;0.000209837441415233!GO:0016049;cell growth;0.000228926744005614!GO:0007243;protein kinase cascade;0.000237795385070432!GO:0005048;signal sequence binding;0.000243750722032925!GO:0031497;chromatin assembly;0.000256980567967072!GO:0030133;transport vesicle;0.000260195002343592!GO:0048518;positive regulation of biological process;0.00026308728778812!GO:0001558;regulation of cell growth;0.000267274279739798!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000279892656091257!GO:0016044;membrane organization and biogenesis;0.000291972025476536!GO:0035257;nuclear hormone receptor binding;0.000293732301598654!GO:0044262;cellular carbohydrate metabolic process;0.000307990587359397!GO:0051028;mRNA transport;0.000310882373838805!GO:0015630;microtubule cytoskeleton;0.000321259164407019!GO:0005885;Arp2/3 protein complex;0.000336476002863017!GO:0031072;heat shock protein binding;0.000351320246112352!GO:0008250;oligosaccharyl transferase complex;0.000366882919158004!GO:0050789;regulation of biological process;0.000367660276392029!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000392435699363965!GO:0044427;chromosomal part;0.000398226116563918!GO:0004576;oligosaccharyl transferase activity;0.000420503629996548!GO:0003899;DNA-directed RNA polymerase activity;0.000439818001958236!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000461402806817443!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000486489017727936!GO:0006612;protein targeting to membrane;0.000506949879533775!GO:0030663;COPI coated vesicle membrane;0.000516420494774068!GO:0030126;COPI vesicle coat;0.000516420494774068!GO:0009892;negative regulation of metabolic process;0.000525491959124864!GO:0008186;RNA-dependent ATPase activity;0.000535601366942967!GO:0007010;cytoskeleton organization and biogenesis;0.000543214960019929!GO:0016779;nucleotidyltransferase activity;0.000592791488803904!GO:0065009;regulation of a molecular function;0.000593806589752531!GO:0043492;ATPase activity, coupled to movement of substances;0.000632811669755646!GO:0051920;peroxiredoxin activity;0.00076563124431587!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000785677024990178!GO:0043284;biopolymer biosynthetic process;0.000797956219174147!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000818604960961017!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000847050538716471!GO:0005741;mitochondrial outer membrane;0.000886372142386261!GO:0018196;peptidyl-asparagine modification;0.000886372142386261!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000886372142386261!GO:0006260;DNA replication;0.000919425678291502!GO:0006414;translational elongation;0.00100429245408731!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00110668717081633!GO:0008092;cytoskeletal protein binding;0.00112727649953581!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00116683161215257!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00120066599395571!GO:0019899;enzyme binding;0.00122955445665385!GO:0030176;integral to endoplasmic reticulum membrane;0.00123639081359447!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00129266301140411!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00129266301140411!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00129266301140411!GO:0043681;protein import into mitochondrion;0.00131774214556311!GO:0030137;COPI-coated vesicle;0.00132502918041406!GO:0009967;positive regulation of signal transduction;0.00144678749720001!GO:0005813;centrosome;0.00144678749720001!GO:0005791;rough endoplasmic reticulum;0.00144678749720001!GO:0006891;intra-Golgi vesicle-mediated transport;0.00144678749720001!GO:0004004;ATP-dependent RNA helicase activity;0.00145130381226516!GO:0003729;mRNA binding;0.00165177247502546!GO:0046474;glycerophospholipid biosynthetic process;0.00169322469190219!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00173172494072432!GO:0006626;protein targeting to mitochondrion;0.00182437443360278!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00240504938042794!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00248874048053363!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00248874048053363!GO:0005815;microtubule organizing center;0.00248874048053363!GO:0016272;prefoldin complex;0.0026459796718447!GO:0046489;phosphoinositide biosynthetic process;0.00298017815282011!GO:0004177;aminopeptidase activity;0.00298225639477609!GO:0008047;enzyme activator activity;0.00298225639477609!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00315053597205301!GO:0048471;perinuclear region of cytoplasm;0.00315582856957426!GO:0015992;proton transport;0.00319800036483297!GO:0016363;nuclear matrix;0.00329459685534634!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00333326309675083!GO:0048500;signal recognition particle;0.00339664578103739!GO:0051087;chaperone binding;0.00346864076918941!GO:0006818;hydrogen transport;0.00346864076918941!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00346864076918941!GO:0006383;transcription from RNA polymerase III promoter;0.00356830883513653!GO:0016481;negative regulation of transcription;0.00359243970576753!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0038184551383041!GO:0008243;plasminogen activator activity;0.00391633827397436!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00401495871658437!GO:0042802;identical protein binding;0.00403799482113089!GO:0048487;beta-tubulin binding;0.00404674746631568!GO:0048468;cell development;0.00406832817468345!GO:0006118;electron transport;0.00406832817468345!GO:0008180;signalosome;0.004070956218956!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.004070956218956!GO:0045941;positive regulation of transcription;0.00412192308717534!GO:0045893;positive regulation of transcription, DNA-dependent;0.00414036457520879!GO:0022890;inorganic cation transmembrane transporter activity;0.00443572463097533!GO:0040008;regulation of growth;0.00453594728554767!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00509090902014548!GO:0015002;heme-copper terminal oxidase activity;0.00509090902014548!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00509090902014548!GO:0004129;cytochrome-c oxidase activity;0.00509090902014548!GO:0033673;negative regulation of kinase activity;0.00534410327514386!GO:0006469;negative regulation of protein kinase activity;0.00534410327514386!GO:0007006;mitochondrial membrane organization and biogenesis;0.00544950887625659!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00550447298884785!GO:0045047;protein targeting to ER;0.00550447298884785!GO:0008139;nuclear localization sequence binding;0.00552775462458524!GO:0000087;M phase of mitotic cell cycle;0.00552873933480816!GO:0030027;lamellipodium;0.00555625108809628!GO:0030659;cytoplasmic vesicle membrane;0.00562898747100796!GO:0008610;lipid biosynthetic process;0.00562898747100796!GO:0006839;mitochondrial transport;0.00575986205507764!GO:0044452;nucleolar part;0.00582191892424771!GO:0046467;membrane lipid biosynthetic process;0.00593440450739235!GO:0051301;cell division;0.00594233473993758!GO:0006740;NADPH regeneration;0.00608896722309355!GO:0006098;pentose-phosphate shunt;0.00608896722309355!GO:0051348;negative regulation of transferase activity;0.00620030087050364!GO:0007040;lysosome organization and biogenesis;0.00630283312892251!GO:0045045;secretory pathway;0.00635447147447175!GO:0001726;ruffle;0.00653581054557674!GO:0006950;response to stress;0.00658819923042884!GO:0035258;steroid hormone receptor binding;0.00658948719457394!GO:0007067;mitosis;0.0066108402551785!GO:0007050;cell cycle arrest;0.00670136182019203!GO:0008312;7S RNA binding;0.00673541625161938!GO:0051168;nuclear export;0.00697006144728844!GO:0030134;ER to Golgi transport vesicle;0.00697006144728844!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00697006144728844!GO:0030127;COPII vesicle coat;0.00712631132690237!GO:0012507;ER to Golgi transport vesicle membrane;0.00712631132690237!GO:0007033;vacuole organization and biogenesis;0.00720420435309042!GO:0030658;transport vesicle membrane;0.0075729262130614!GO:0006509;membrane protein ectodomain proteolysis;0.00757469615532896!GO:0033619;membrane protein proteolysis;0.00757469615532896!GO:0017166;vinculin binding;0.00774655155034982!GO:0006352;transcription initiation;0.00779354996154525!GO:0030521;androgen receptor signaling pathway;0.00789602566065091!GO:0030132;clathrin coat of coated pit;0.00791939210292526!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00804431423070879!GO:0000786;nucleosome;0.00812283782213223!GO:0030880;RNA polymerase complex;0.0081593770451086!GO:0046483;heterocycle metabolic process;0.00823718270853253!GO:0003711;transcription elongation regulator activity;0.00898407815079298!GO:0008033;tRNA processing;0.0095600210486669!GO:0006497;protein amino acid lipidation;0.00981462319338916!GO:0007264;small GTPase mediated signal transduction;0.0101939172326336!GO:0048144;fibroblast proliferation;0.0101939172326336!GO:0048145;regulation of fibroblast proliferation;0.0101939172326336!GO:0006897;endocytosis;0.0103407519440654!GO:0010324;membrane invagination;0.0103407519440654!GO:0005862;muscle thin filament tropomyosin;0.0104957493950095!GO:0008632;apoptotic program;0.0105353047292165!GO:0005684;U2-dependent spliceosome;0.0106313494240147!GO:0003746;translation elongation factor activity;0.0108823412388061!GO:0030118;clathrin coat;0.0108823412388061!GO:0016126;sterol biosynthetic process;0.0108986428774003!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0109359546256266!GO:0006082;organic acid metabolic process;0.0109504259143146!GO:0000059;protein import into nucleus, docking;0.0109976365263116!GO:0043022;ribosome binding;0.0111234427779024!GO:0019752;carboxylic acid metabolic process;0.011302519717131!GO:0044433;cytoplasmic vesicle part;0.0113792862565033!GO:0005869;dynactin complex;0.0113792862565033!GO:0051101;regulation of DNA binding;0.0115370180365247!GO:0006417;regulation of translation;0.011624479338055!GO:0031901;early endosome membrane;0.0119235981755202!GO:0030041;actin filament polymerization;0.0123577909338251!GO:0006778;porphyrin metabolic process;0.0129864055740386!GO:0033013;tetrapyrrole metabolic process;0.0129864055740386!GO:0050662;coenzyme binding;0.013464849486196!GO:0050811;GABA receptor binding;0.013476801186084!GO:0042168;heme metabolic process;0.014086693490402!GO:0051128;regulation of cellular component organization and biogenesis;0.0143315538780352!GO:0051287;NAD binding;0.0146650659395467!GO:0031902;late endosome membrane;0.0146950941529349!GO:0008154;actin polymerization and/or depolymerization;0.0150189004474642!GO:0048146;positive regulation of fibroblast proliferation;0.0150189004474642!GO:0051329;interphase of mitotic cell cycle;0.0153414988221777!GO:0000339;RNA cap binding;0.0157865910146648!GO:0051539;4 iron, 4 sulfur cluster binding;0.0158158908898944!GO:0006650;glycerophospholipid metabolic process;0.016566673443361!GO:0015631;tubulin binding;0.0167890288263033!GO:0050790;regulation of catalytic activity;0.0167905579336219!GO:0005832;chaperonin-containing T-complex;0.0168138558790834!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0169591531885128!GO:0000428;DNA-directed RNA polymerase complex;0.0169591531885128!GO:0031529;ruffle organization and biogenesis;0.0170336851869486!GO:0022884;macromolecule transmembrane transporter activity;0.0170336851869486!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0170336851869486!GO:0012506;vesicle membrane;0.0173177694301384!GO:0008320;protein transmembrane transporter activity;0.0174748761941813!GO:0006892;post-Golgi vesicle-mediated transport;0.0174748761941813!GO:0030660;Golgi-associated vesicle membrane;0.0175674441227769!GO:0006595;polyamine metabolic process;0.0177579518775876!GO:0065007;biological regulation;0.0177579518775876!GO:0032984;macromolecular complex disassembly;0.0182484614249304!GO:0050681;androgen receptor binding;0.0182484614249304!GO:0031625;ubiquitin protein ligase binding;0.0193466377818122!GO:0051540;metal cluster binding;0.0197930201736256!GO:0051536;iron-sulfur cluster binding;0.0197930201736256!GO:0046519;sphingoid metabolic process;0.0200144927555319!GO:0030032;lamellipodium biogenesis;0.0203790802793583!GO:0006979;response to oxidative stress;0.0206384068133808!GO:0006506;GPI anchor biosynthetic process;0.0219476233790636!GO:0005774;vacuolar membrane;0.0222000985880145!GO:0043065;positive regulation of apoptosis;0.0231455836638701!GO:0051271;negative regulation of cell motility;0.0232696839068355!GO:0006402;mRNA catabolic process;0.0232964583579952!GO:0022403;cell cycle phase;0.0235226805431255!GO:0051098;regulation of binding;0.023695833536661!GO:0030833;regulation of actin filament polymerization;0.0237928310410068!GO:0003756;protein disulfide isomerase activity;0.0237928310410068!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0237928310410068!GO:0016408;C-acyltransferase activity;0.0238073016114458!GO:0006289;nucleotide-excision repair;0.023819369241862!GO:0006007;glucose catabolic process;0.0238287772529929!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0239298574168072!GO:0046426;negative regulation of JAK-STAT cascade;0.0240326103284531!GO:0043068;positive regulation of programmed cell death;0.0244869650277221!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0250734212518849!GO:0009889;regulation of biosynthetic process;0.0252456205274774!GO:0006354;RNA elongation;0.0252480343274967!GO:0042158;lipoprotein biosynthetic process;0.0252717553470484!GO:0000049;tRNA binding;0.0255273567077831!GO:0007034;vacuolar transport;0.0255273567077831!GO:0006695;cholesterol biosynthetic process;0.0258768562380933!GO:0030384;phosphoinositide metabolic process;0.0258768562380933!GO:0000209;protein polyubiquitination;0.0258768562380933!GO:0030119;AP-type membrane coat adaptor complex;0.0258768562380933!GO:0007021;tubulin folding;0.0267898816340413!GO:0022408;negative regulation of cell-cell adhesion;0.0271207291324892!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.027616807946793!GO:0003690;double-stranded DNA binding;0.0278575957316725!GO:0045936;negative regulation of phosphate metabolic process;0.0278639970727293!GO:0005801;cis-Golgi network;0.0285331046987918!GO:0006739;NADP metabolic process;0.0286850373366305!GO:0051252;regulation of RNA metabolic process;0.0288722099663681!GO:0008637;apoptotic mitochondrial changes;0.0297968030828721!GO:0006401;RNA catabolic process;0.0298129733254658!GO:0006505;GPI anchor metabolic process;0.0298129733254658!GO:0016251;general RNA polymerase II transcription factor activity;0.0305128163310235!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.030686973310652!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.030686973310652!GO:0009893;positive regulation of metabolic process;0.0307405376615447!GO:0016197;endosome transport;0.0315183126319779!GO:0016860;intramolecular oxidoreductase activity;0.0316788138381523!GO:0043241;protein complex disassembly;0.0318981370188733!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0322732439594445!GO:0030518;steroid hormone receptor signaling pathway;0.0325502921110304!GO:0006518;peptide metabolic process;0.0326319516946585!GO:0005669;transcription factor TFIID complex;0.032653281665994!GO:0007162;negative regulation of cell adhesion;0.0331820723580618!GO:0045792;negative regulation of cell size;0.0332247262265475!GO:0031326;regulation of cellular biosynthetic process;0.0340676171280953!GO:0000082;G1/S transition of mitotic cell cycle;0.0340686177218871!GO:0043086;negative regulation of catalytic activity;0.0341454833344076!GO:0043624;cellular protein complex disassembly;0.0341454833344076!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0342840555252854!GO:0001952;regulation of cell-matrix adhesion;0.034418022918061!GO:0030308;negative regulation of cell growth;0.0348754082048745!GO:0008383;manganese superoxide dismutase activity;0.034890953377625!GO:0001315;age-dependent response to reactive oxygen species;0.034890953377625!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0352664506918949!GO:0000030;mannosyltransferase activity;0.035684492304553!GO:0006520;amino acid metabolic process;0.0358525292908021!GO:0008538;proteasome activator activity;0.0365224461883109!GO:0009116;nucleoside metabolic process;0.0365839768610337!GO:0000096;sulfur amino acid metabolic process;0.0367490033888533!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0368239603607303!GO:0033043;regulation of organelle organization and biogenesis;0.0368239603607303!GO:0006984;ER-nuclear signaling pathway;0.0371180049229973!GO:0006378;mRNA polyadenylation;0.0373126716178427!GO:0008022;protein C-terminus binding;0.0374013602248649!GO:0006779;porphyrin biosynthetic process;0.0374013602248649!GO:0033014;tetrapyrrole biosynthetic process;0.0374013602248649!GO:0006672;ceramide metabolic process;0.0376991835307658!GO:0048660;regulation of smooth muscle cell proliferation;0.0376991835307658!GO:0005096;GTPase activator activity;0.0382231276547962!GO:0019222;regulation of metabolic process;0.0384544325050793!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0385130973397906!GO:0010257;NADH dehydrogenase complex assembly;0.0385130973397906!GO:0033108;mitochondrial respiratory chain complex assembly;0.0385130973397906!GO:0032940;secretion by cell;0.0387171926547753!GO:0007030;Golgi organization and biogenesis;0.0388890565123945!GO:0030508;thiol-disulfide exchange intermediate activity;0.0389484858433585!GO:0031371;ubiquitin conjugating enzyme complex;0.040076030435715!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0401274238382314!GO:0008283;cell proliferation;0.0403279225753779!GO:0006783;heme biosynthetic process;0.0403279225753779!GO:0043433;negative regulation of transcription factor activity;0.0408087633194355!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0411088978671029!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0413067611817278!GO:0003779;actin binding;0.0413067611817278!GO:0035035;histone acetyltransferase binding;0.0416037612125223!GO:0044437;vacuolar part;0.0421754875078595!GO:0030125;clathrin vesicle coat;0.042716826358263!GO:0030665;clathrin coated vesicle membrane;0.042716826358263!GO:0006458;'de novo' protein folding;0.0428575935525328!GO:0051084;'de novo' posttranslational protein folding;0.0428575935525328!GO:0031970;organelle envelope lumen;0.0430678455689476!GO:0030131;clathrin adaptor complex;0.0432659054525095!GO:0008064;regulation of actin polymerization and/or depolymerization;0.043290904341387!GO:0003678;DNA helicase activity;0.044564302537979!GO:0006376;mRNA splice site selection;0.0456944591210541!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0456944591210541!GO:0004287;prolyl oligopeptidase activity;0.0458789988494276!GO:0022415;viral reproductive process;0.0462181500347102!GO:0051059;NF-kappaB binding;0.0462181500347102!GO:0031124;mRNA 3'-end processing;0.0462386548916312!GO:0005092;GDP-dissociation inhibitor activity;0.0467782034238505!GO:0030911;TPR domain binding;0.0469394101246772!GO:0001953;negative regulation of cell-matrix adhesion;0.0480397981938816!GO:0005758;mitochondrial intermembrane space;0.0480397981938816!GO:0008147;structural constituent of bone;0.0480573085590736!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0485102765302142!GO:0040013;negative regulation of locomotion;0.0494435789269226!GO:0001527;microfibril;0.0498254952956848!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0499800500601469!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0499800500601469!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0499800500601469 | |||
|sample_id=12740 | |sample_id=12740 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 100: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|time= 00hr00min | |||
|timecourse=AoSMC_response_to_FGF2 | |||
|top_motifs=ALX4:2.44649173195;NKX3-1:1.93166548011;NKX2-2,8:1.78780914258;UFEwm:1.64412787195;GCM1,2:1.44835697907;FOXL1:1.35444619776;TP53:1.33375881818;ALX1:1.27575584607;ONECUT1,2:1.24897387466;NFE2L1:1.23846407354;EVI1:1.13445391152;ZNF238:1.12014529483;ZBTB6:1.10521953668;NKX3-2:1.10112217827;XBP1:1.0872415054;TEF:1.0390037742;POU1F1:0.996843077917;PAX4:0.951948254909;SRF:0.947982927138;PAX1,9:0.947264625064;CDC5L:0.908896892195;HOX{A5,B5}:0.908074572404;AIRE:0.810504725621;KLF4:0.795649106406;ZIC1..3:0.795206638599;HSF1,2:0.789315280345;TAL1_TCF{3,4,12}:0.768257027725;HMGA1,2:0.761896379182;TLX1..3_NFIC{dimer}:0.700824339507;POU6F1:0.676664011677;RXR{A,B,G}:0.663510286359;HOX{A4,D4}:0.644274185951;MYBL2:0.632924101305;EN1,2:0.629992474602;NFATC1..3:0.629181593329;PPARG:0.620374648816;NANOG{mouse}:0.616912117282;PAX8:0.609370994001;POU3F1..4:0.607270476217;GATA4:0.600855235733;GZF1:0.593630059376;TEAD1:0.562013419765;TBP:0.521992691882;NFE2L2:0.518563366339;TFAP4:0.513314272756;ZNF384:0.51279206319;FOXM1:0.501877760224;GLI1..3:0.490368016374;EBF1:0.473795257525;HMX1:0.46608203057;NKX6-1,2:0.421404191579;HIF1A:0.39849257665;ATF6:0.39749527275;FOXD3:0.385448373685;FOX{I1,J2}:0.363201152965;BACH2:0.338808470033;CDX1,2,4:0.2888259724;bHLH_family:0.284095411663;LHX3,4:0.254094953882;NR3C1:0.244691947733;ZBTB16:0.240589424291;TLX2:0.239631074477;DBP:0.234612395956;HES1:0.230232743746;TFCP2:0.229713396282;PAX5:0.226950072329;FOXP3:0.217303836292;SOX2:0.21704842881;BPTF:0.214931156785;MZF1:0.20480751788;NFIX:0.192324482183;JUN:0.192292955912;IKZF1:0.168646773278;SOX17:0.167418856543;GTF2I:0.161051294968;PRDM1:0.158002473289;GTF2A1,2:0.157353940965;TBX4,5:0.142917305484;FOS_FOS{B,L1}_JUN{B,D}:0.119450168436;REST:0.110887595197;FOXQ1:0.11008364153;GFI1B:0.108448845592;HLF:0.0898071455433;IKZF2:0.0710846767837;CRX:0.0562801855551;HBP1_HMGB_SSRP1_UBTF:0.0401855795481;HOXA9_MEIS1:0.0142450151026;SOX5:0.0123445904221;NFKB1_REL_RELA:0.00755049752127;LEF1_TCF7_TCF7L1,2:0.00240695221678;MAFB:-0.00623533781646;FOSL2:-0.0100110335681;PAX6:-0.0338261659164;SPZ1:-0.0649959198531;MTE{core}:-0.0703704122096;HAND1,2:-0.0740397008144;AHR_ARNT_ARNT2:-0.088012099164;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.090344576066;HNF1A:-0.11763858065;RUNX1..3:-0.119245935432;PATZ1:-0.184713362822;TFAP2{A,C}:-0.200149973775;PITX1..3:-0.206650924389;MYB:-0.209204606539;NKX2-1,4:-0.214957367823;MEF2{A,B,C,D}:-0.217122006082;YY1:-0.225018971627;NFE2:-0.235021170413;MYFfamily:-0.237597719176;ELK1,4_GABP{A,B1}:-0.24385941743;ELF1,2,4:-0.24639900841;STAT5{A,B}:-0.271305315742;SMAD1..7,9:-0.274516461468;TOPORS:-0.281221387175;ESR1:-0.287330130394;STAT2,4,6:-0.297911059857;MED-1{core}:-0.298598284974;ADNP_IRX_SIX_ZHX:-0.300605393113;SOX{8,9,10}:-0.300761237716;FOX{D1,D2}:-0.301658778535;AR:-0.302977852724;ETS1,2:-0.306036690584;NFIL3:-0.312588321306;ARID5B:-0.321678575739;SPI1:-0.326050894289;RREB1:-0.326762225993;MAZ:-0.351009159308;OCT4_SOX2{dimer}:-0.353155539779;RFX1:-0.362876158397;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.368608841053;TFAP2B:-0.381729308679;POU5F1:-0.386146145599;HNF4A_NR2F1,2:-0.402629972554;CEBPA,B_DDIT3:-0.404520884196;DMAP1_NCOR{1,2}_SMARC:-0.415236271069;RXRA_VDR{dimer}:-0.421490499276;PRRX1,2:-0.431496674493;HIC1:-0.440126272346;POU2F1..3:-0.449216695339;NR6A1:-0.468607003628;NRF1:-0.475366774488;ZNF143:-0.475526804386;NR1H4:-0.490405591192;ZFP161:-0.502332144734;NHLH1,2:-0.502441306928;PAX2:-0.517929149217;SPIB:-0.518935022956;MTF1:-0.520845242541;ESRRA:-0.544992787671;SNAI1..3:-0.558762582073;ATF5_CREB3:-0.558810946679;IRF1,2:-0.568058294491;TGIF1:-0.574926944032;ZNF148:-0.585275274105;HOX{A6,A7,B6,B7}:-0.601935974538;LMO2:-0.618713480137;ZEB1:-0.638494317078;E2F1..5:-0.657105095741;GFI1:-0.66155048654;XCPE1{core}:-0.673719809009;FOXP1:-0.677700796338;RFX2..5_RFXANK_RFXAP:-0.699415694171;T:-0.701613775369;FOXO1,3,4:-0.711780944919;ZNF423:-0.745995696146;GATA6:-0.758106860094;CUX2:-0.763642658218;CREB1:-0.782113995182;IRF7:-0.824977059906;NKX2-3_NKX2-5:-0.84724561134;SREBF1,2:-0.850559602711;ATF2:-0.850646683573;VSX1,2:-0.861989242716;TFDP1:-0.865058800869;EGR1..3:-0.872074022411;MYOD1:-0.876479859956;PBX1:-0.915241941346;FOX{F1,F2,J1}:-0.924540199271;STAT1,3:-0.926761714852;SP1:-0.957309366703;FOXN1:-0.973457034106;NR5A1,2:-1.0030881702;ATF4:-1.00609105649;PDX1:-1.03407429451;FOXA2:-1.07918920484;RBPJ:-1.10570485406;PAX3,7:-1.16775709443;NFY{A,B,C}:-1.22755076639;BREu{core}:-1.25590848879;NANOG:-1.29102775175;EP300:-1.38166149709;RORA:-1.46528356053 | |top_motifs=ALX4:2.44649173195;NKX3-1:1.93166548011;NKX2-2,8:1.78780914258;UFEwm:1.64412787195;GCM1,2:1.44835697907;FOXL1:1.35444619776;TP53:1.33375881818;ALX1:1.27575584607;ONECUT1,2:1.24897387466;NFE2L1:1.23846407354;EVI1:1.13445391152;ZNF238:1.12014529483;ZBTB6:1.10521953668;NKX3-2:1.10112217827;XBP1:1.0872415054;TEF:1.0390037742;POU1F1:0.996843077917;PAX4:0.951948254909;SRF:0.947982927138;PAX1,9:0.947264625064;CDC5L:0.908896892195;HOX{A5,B5}:0.908074572404;AIRE:0.810504725621;KLF4:0.795649106406;ZIC1..3:0.795206638599;HSF1,2:0.789315280345;TAL1_TCF{3,4,12}:0.768257027725;HMGA1,2:0.761896379182;TLX1..3_NFIC{dimer}:0.700824339507;POU6F1:0.676664011677;RXR{A,B,G}:0.663510286359;HOX{A4,D4}:0.644274185951;MYBL2:0.632924101305;EN1,2:0.629992474602;NFATC1..3:0.629181593329;PPARG:0.620374648816;NANOG{mouse}:0.616912117282;PAX8:0.609370994001;POU3F1..4:0.607270476217;GATA4:0.600855235733;GZF1:0.593630059376;TEAD1:0.562013419765;TBP:0.521992691882;NFE2L2:0.518563366339;TFAP4:0.513314272756;ZNF384:0.51279206319;FOXM1:0.501877760224;GLI1..3:0.490368016374;EBF1:0.473795257525;HMX1:0.46608203057;NKX6-1,2:0.421404191579;HIF1A:0.39849257665;ATF6:0.39749527275;FOXD3:0.385448373685;FOX{I1,J2}:0.363201152965;BACH2:0.338808470033;CDX1,2,4:0.2888259724;bHLH_family:0.284095411663;LHX3,4:0.254094953882;NR3C1:0.244691947733;ZBTB16:0.240589424291;TLX2:0.239631074477;DBP:0.234612395956;HES1:0.230232743746;TFCP2:0.229713396282;PAX5:0.226950072329;FOXP3:0.217303836292;SOX2:0.21704842881;BPTF:0.214931156785;MZF1:0.20480751788;NFIX:0.192324482183;JUN:0.192292955912;IKZF1:0.168646773278;SOX17:0.167418856543;GTF2I:0.161051294968;PRDM1:0.158002473289;GTF2A1,2:0.157353940965;TBX4,5:0.142917305484;FOS_FOS{B,L1}_JUN{B,D}:0.119450168436;REST:0.110887595197;FOXQ1:0.11008364153;GFI1B:0.108448845592;HLF:0.0898071455433;IKZF2:0.0710846767837;CRX:0.0562801855551;HBP1_HMGB_SSRP1_UBTF:0.0401855795481;HOXA9_MEIS1:0.0142450151026;SOX5:0.0123445904221;NFKB1_REL_RELA:0.00755049752127;LEF1_TCF7_TCF7L1,2:0.00240695221678;MAFB:-0.00623533781646;FOSL2:-0.0100110335681;PAX6:-0.0338261659164;SPZ1:-0.0649959198531;MTE{core}:-0.0703704122096;HAND1,2:-0.0740397008144;AHR_ARNT_ARNT2:-0.088012099164;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.090344576066;HNF1A:-0.11763858065;RUNX1..3:-0.119245935432;PATZ1:-0.184713362822;TFAP2{A,C}:-0.200149973775;PITX1..3:-0.206650924389;MYB:-0.209204606539;NKX2-1,4:-0.214957367823;MEF2{A,B,C,D}:-0.217122006082;YY1:-0.225018971627;NFE2:-0.235021170413;MYFfamily:-0.237597719176;ELK1,4_GABP{A,B1}:-0.24385941743;ELF1,2,4:-0.24639900841;STAT5{A,B}:-0.271305315742;SMAD1..7,9:-0.274516461468;TOPORS:-0.281221387175;ESR1:-0.287330130394;STAT2,4,6:-0.297911059857;MED-1{core}:-0.298598284974;ADNP_IRX_SIX_ZHX:-0.300605393113;SOX{8,9,10}:-0.300761237716;FOX{D1,D2}:-0.301658778535;AR:-0.302977852724;ETS1,2:-0.306036690584;NFIL3:-0.312588321306;ARID5B:-0.321678575739;SPI1:-0.326050894289;RREB1:-0.326762225993;MAZ:-0.351009159308;OCT4_SOX2{dimer}:-0.353155539779;RFX1:-0.362876158397;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.368608841053;TFAP2B:-0.381729308679;POU5F1:-0.386146145599;HNF4A_NR2F1,2:-0.402629972554;CEBPA,B_DDIT3:-0.404520884196;DMAP1_NCOR{1,2}_SMARC:-0.415236271069;RXRA_VDR{dimer}:-0.421490499276;PRRX1,2:-0.431496674493;HIC1:-0.440126272346;POU2F1..3:-0.449216695339;NR6A1:-0.468607003628;NRF1:-0.475366774488;ZNF143:-0.475526804386;NR1H4:-0.490405591192;ZFP161:-0.502332144734;NHLH1,2:-0.502441306928;PAX2:-0.517929149217;SPIB:-0.518935022956;MTF1:-0.520845242541;ESRRA:-0.544992787671;SNAI1..3:-0.558762582073;ATF5_CREB3:-0.558810946679;IRF1,2:-0.568058294491;TGIF1:-0.574926944032;ZNF148:-0.585275274105;HOX{A6,A7,B6,B7}:-0.601935974538;LMO2:-0.618713480137;ZEB1:-0.638494317078;E2F1..5:-0.657105095741;GFI1:-0.66155048654;XCPE1{core}:-0.673719809009;FOXP1:-0.677700796338;RFX2..5_RFXANK_RFXAP:-0.699415694171;T:-0.701613775369;FOXO1,3,4:-0.711780944919;ZNF423:-0.745995696146;GATA6:-0.758106860094;CUX2:-0.763642658218;CREB1:-0.782113995182;IRF7:-0.824977059906;NKX2-3_NKX2-5:-0.84724561134;SREBF1,2:-0.850559602711;ATF2:-0.850646683573;VSX1,2:-0.861989242716;TFDP1:-0.865058800869;EGR1..3:-0.872074022411;MYOD1:-0.876479859956;PBX1:-0.915241941346;FOX{F1,F2,J1}:-0.924540199271;STAT1,3:-0.926761714852;SP1:-0.957309366703;FOXN1:-0.973457034106;NR5A1,2:-1.0030881702;ATF4:-1.00609105649;PDX1:-1.03407429451;FOXA2:-1.07918920484;RBPJ:-1.10570485406;PAX3,7:-1.16775709443;NFY{A,B,C}:-1.22755076639;BREu{core}:-1.25590848879;NANOG:-1.29102775175;EP300:-1.38166149709;RORA:-1.46528356053 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12740-135I4;search_select_hide=table117:FF:12740-135I4 | |||
}} | }} | ||
Latest revision as of 18:43, 4 June 2020
| Name: | Aortic smooth muscle cell response to FGF2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13358 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13358
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13358
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.121 |
| 10 | 10 | 0.277 |
| 100 | 100 | 0.618 |
| 101 | 101 | 0.993 |
| 102 | 102 | 0.958 |
| 103 | 103 | 0.111 |
| 104 | 104 | 0.691 |
| 105 | 105 | 0.384 |
| 106 | 106 | 0.0213 |
| 107 | 107 | 0.124 |
| 108 | 108 | 0.324 |
| 109 | 109 | 0.285 |
| 11 | 11 | 0.0515 |
| 110 | 110 | 0.0956 |
| 111 | 111 | 0.0905 |
| 112 | 112 | 0.116 |
| 113 | 113 | 0.125 |
| 114 | 114 | 0.032 |
| 115 | 115 | 0.174 |
| 116 | 116 | 0.125 |
| 117 | 117 | 0.206 |
| 118 | 118 | 0.475 |
| 119 | 119 | 0.309 |
| 12 | 12 | 0.909 |
| 120 | 120 | 0.0229 |
| 121 | 121 | 0.631 |
| 122 | 122 | 0.0764 |
| 123 | 123 | 0.154 |
| 124 | 124 | 0.787 |
| 125 | 125 | 0.328 |
| 126 | 126 | 0.308 |
| 127 | 127 | 0.903 |
| 128 | 128 | 0.0701 |
| 129 | 129 | 0.366 |
| 13 | 13 | 0.486 |
| 130 | 130 | 0.643 |
| 131 | 131 | 0.751 |
| 132 | 132 | 0.729 |
| 133 | 133 | 0.987 |
| 134 | 134 | 0.773 |
| 135 | 135 | 0.312 |
| 136 | 136 | 0.842 |
| 137 | 137 | 0.402 |
| 138 | 138 | 0.766 |
| 139 | 139 | 0.402 |
| 14 | 14 | 0.866 |
| 140 | 140 | 0.00286 |
| 141 | 141 | 0.831 |
| 142 | 142 | 0.578 |
| 143 | 143 | 0.0169 |
| 144 | 144 | 0.176 |
| 145 | 145 | 0.148 |
| 146 | 146 | 0.97 |
| 147 | 147 | 0.263 |
| 148 | 148 | 0.017 |
| 149 | 149 | 0.0506 |
| 15 | 15 | 0.221 |
| 150 | 150 | 0.135 |
| 151 | 151 | 0.682 |
| 152 | 152 | 0.0792 |
| 153 | 153 | 0.838 |
| 154 | 154 | 0.951 |
| 155 | 155 | 0.187 |
| 156 | 156 | 0.986 |
| 157 | 157 | 0.383 |
| 158 | 158 | 0.0408 |
| 159 | 159 | 0.142 |
| 16 | 16 | 0.0451 |
| 160 | 160 | 0.168 |
| 161 | 161 | 0.808 |
| 162 | 162 | 0.371 |
| 163 | 163 | 0.803 |
| 164 | 164 | 0.0713 |
| 165 | 165 | 0.845 |
| 166 | 166 | 0.407 |
| 167 | 167 | 0.586 |
| 168 | 168 | 0.366 |
| 169 | 169 | 0.0348 |
| 17 | 17 | 0.134 |
| 18 | 18 | 0.108 |
| 19 | 19 | 0.0754 |
| 2 | 2 | 0.479 |
| 20 | 20 | 0.908 |
| 21 | 21 | 0.28 |
| 22 | 22 | 0.461 |
| 23 | 23 | 0.197 |
| 24 | 24 | 0.964 |
| 25 | 25 | 0.448 |
| 26 | 26 | 0.0823 |
| 27 | 27 | 0.313 |
| 28 | 28 | 0.547 |
| 29 | 29 | 0.0596 |
| 3 | 3 | 0.145 |
| 30 | 30 | 0.788 |
| 31 | 31 | 0.31 |
| 32 | 32 | 2.29153e-4 |
| 33 | 33 | 0.482 |
| 34 | 34 | 0.881 |
| 35 | 35 | 0.115 |
| 36 | 36 | 0.731 |
| 37 | 37 | 0.0194 |
| 38 | 38 | 0.697 |
| 39 | 39 | 0.325 |
| 4 | 4 | 0.976 |
| 40 | 40 | 0.704 |
| 41 | 41 | 0.699 |
| 42 | 42 | 0.778 |
| 43 | 43 | 0.179 |
| 44 | 44 | 0.0317 |
| 45 | 45 | 0.698 |
| 46 | 46 | 0.0348 |
| 47 | 47 | 0.23 |
| 48 | 48 | 0.272 |
| 49 | 49 | 0.483 |
| 5 | 5 | 0.42 |
| 50 | 50 | 0.63 |
| 51 | 51 | 0.752 |
| 52 | 52 | 0.702 |
| 53 | 53 | 0.37 |
| 54 | 54 | 0.595 |
| 55 | 55 | 0.338 |
| 56 | 56 | 0.679 |
| 57 | 57 | 0.13 |
| 58 | 58 | 0.914 |
| 59 | 59 | 0.0333 |
| 6 | 6 | 0.615 |
| 60 | 60 | 0.316 |
| 61 | 61 | 0.7 |
| 62 | 62 | 0.375 |
| 63 | 63 | 0.126 |
| 64 | 64 | 0.564 |
| 65 | 65 | 0.268 |
| 66 | 66 | 0.443 |
| 67 | 67 | 0.352 |
| 68 | 68 | 0.541 |
| 69 | 69 | 0.65 |
| 7 | 7 | 0.929 |
| 70 | 70 | 0.0812 |
| 71 | 71 | 0.145 |
| 72 | 72 | 0.725 |
| 73 | 73 | 0.0381 |
| 74 | 74 | 0.00617 |
| 75 | 75 | 0.43 |
| 76 | 76 | 0.581 |
| 77 | 77 | 0.0202 |
| 78 | 78 | 0.369 |
| 79 | 79 | 0.00312 |
| 8 | 8 | 0.0126 |
| 80 | 80 | 0.572 |
| 81 | 81 | 0.214 |
| 82 | 82 | 0.0752 |
| 83 | 83 | 0.976 |
| 84 | 84 | 0.552 |
| 85 | 85 | 0.0495 |
| 86 | 86 | 0.47 |
| 87 | 87 | 0.184 |
| 88 | 88 | 0.168 |
| 89 | 89 | 0.0982 |
| 9 | 9 | 0.499 |
| 90 | 90 | 0.0947 |
| 91 | 91 | 0.54 |
| 92 | 92 | 0.235 |
| 93 | 93 | 0.491 |
| 94 | 94 | 0.236 |
| 95 | 95 | 0.306 |
| 96 | 96 | 0.385 |
| 97 | 97 | 0.803 |
| 98 | 98 | 0.723 |
| 99 | 99 | 0.136 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13358
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000546 human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000339 (FGF2 treatment sample)
0000546 (human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
