FF:10277-104E7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005088 | ||
|accession_numbers=CAGE;DRX008696;DRR009568;DRZ000993;DRZ002378;DRZ012343;DRZ013728 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000941,UBERON:0003714,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0005162,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0001785,UBERON:0002464,UBERON:0004904,UBERON:0000122,UBERON:0001021,UBERON:0004732,UBERON:0001032,UBERON:0010317,UBERON:0000010,UBERON:0001016,UBERON:0002104,UBERON:0004456 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011166 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!3.21!1607.58!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!3.11!1273.50!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!2.52!418.31!ZNF488;;chr11:61520075..61520136,+!p1@C11orf9!2.45!579.64!C11orf9;;chr22:38380543..38380569,-!p1@SOX10!2.39!246.99!SOX10;;chr21:34442540..34442560,+!p2@OLIG1!2.31!202.73!OLIG1;;chr8:53322304..53322340,-!p1@ST18!2.24!171.32!ST18;;chr2:145277882..145277967,-!p3@ZEB2!2.21!271.26!ZEB2;;chr21:34398234..34398250,+!p1@OLIG2!2.15!141.34!OLIG2;;chr10:134599649..134599653,-!p1@NKX6-2!2.14!135.63!NKX6-2;;chr1:214161272..214161322,+!p1@PROX1!1.94!119.93!PROX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.94!85.66!POU3F3;;chr8:53322347..53322378,-!p2@ST18!1.88!75.67!ST18;;chr19:46801639..46801699,+!p1@HIF3A!1.84!68.53!HIF3A;;chr16:1031762..1031781,+!p1@SOX8!1.83!67.10!SOX8;;chr19:30863271..30863338,+!p1@ZNF536!1.80!62.82!ZNF536;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.79!59.96!PEG3;;chr15:80696703..80696754,+!p1@ARNT2!1.73!69.96!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.70!64.25!PRDM8;;chr10:48359344..48359376,+!p2@ZNF488!1.68!47.11!ZNF488;;chr10:111987079..111987115,+!p3@MXI1!1.67!61.39!MXI1;;chr12:26277956..26277980,-!p1@BHLHE41!1.60!134.20!BHLHE41;;chr12:26277817..26277863,-!p2@BHLHE41!1.60!51.40!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.58!52.82!ZBTB16;;chr19:13135386..13135435,+!p4@NFIX!1.58!37.12!NFIX;;chr22:41763452..41763466,+!p2@TEF!1.56!35.69!TEF;;chr9:114287433..114287513,+!p1@ZNF483!1.55!87.09!ZNF483;;chr16:51185172..51185197,-!p1@SALL1!1.55!34.26!SALL1;;chr7:28725740..28725778,+!p1@CREB5!1.47!242.71!CREB5;;chr19:9879350..9879419,-!p2@ZNF846!1.45!57.11!ZNF846;;chr20:21494654..21494678,-!p2@NKX2-2!1.45!27.13!NKX2-2;;chr2:145275982..145276003,-!p7@ZEB2!1.45!27.13!ZEB2;;chr4:26344778..26344807,+!p8@RBPJ!1.45!27.13!RBPJ;;chr19:13135582..13135600,+!p3@NFIX!1.45!27.13!NFIX;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.43!25.70!POU3F3;;chr7:63505799..63505904,+!p1@ZNF727!1.43!25.70!ZNF727;;chr14:33408072..33408114,+!p2@NPAS3!1.42!29.98!NPAS3;;chr4:26344754..26344772,+!p10@RBPJ!1.40!24.27!RBPJ;;chr7:86781858..86781879,+!p3@DMTF1!1.37!35.69!DMTF1;;chr20:21494684..21494708,-!p1@NKX2-2!1.35!21.42!NKX2-2;;chr20:3388541..3388575,-!p2@C20orf194!1.34!79.95!C20orf194;;chr11:113930291..113930339,+!p2@ZBTB16!1.33!32.84!ZBTB16;;chr12:26277929..26277955,-!p3@BHLHE41!1.33!28.55!BHLHE41;;chr3:147111198..147111225,+!p4@ZIC1!1.32!19.99!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!1.32!19.99!ZIC1;;chrY:21906594..21906622,-!p1@KDM5D!1.32!19.99!KDM5D;;chr2:145277640..145277771,-!p1@ZEB2!1.31!254.13!ZEB2;;chr17:47439437..47439533,-!p1@ZNF652!1.31!152.76!ZNF652;;chr19:21512115..21512135,-!p3@ZNF708!1.29!37.12!ZNF708;;chr2:177053386..177053402,+!p1@HOXD1!1.29!18.56!HOXD1;;chr1:40105299..40105326,-!p1@HEYL!1.29!18.56!HEYL;;chr17:53342311..53342400,+!p1@HLF!1.27!19.99!HLF;;chr20:62680984..62680999,-!p1@SOX18!1.26!22.84!SOX18;;chr9:1050331..1050363,+!p1@DMRT2!1.26!17.13!DMRT2;;chr7:28448965..28448994,+!p2@CREB5!1.25!58.54!CREB5;;chrX:101186981..101187030,-!p1@ZMAT1!1.25!54.25!ZMAT1;;chr1:8877692..8877732,-!p1@RERE!1.23!125.64!RERE;;chr21:34442584..34442587,+!p3@OLIG1!1.22!15.70!OLIG1;;chr16:51185318..51185348,-!p2@SALL1!1.22!15.70!SALL1;;chr6:41701581..41701613,-!p2@TFEB!1.22!15.70!TFEB;;chr12:103351444..103351461,+!p1@ASCL1!1.22!15.70!ASCL1;;chr2:239148671..239148686,-!p1@HES6!1.20!54.25!HES6;;chr3:52001426..52001447,-!p3@PCBP4!1.20!41.40!PCBP4;;chr3:126076242..126076257,-!p1@KLF15!1.20!18.56!KLF15;;chrX:107019163..107019179,-!p7@TSC22D3!1.20!17.13!TSC22D3;;chr6:126070769..126070801,+!p1@HEY2!1.20!17.13!HEY2;;chr12:125003087..125003141,-!p4@NCOR2!1.19!18.56!NCOR2;;chr7:99613250..99613264,+!p2@ZKSCAN1!1.18!41.40!ZKSCAN1;;chr11:113930401..113930422,+!p3@ZBTB16!1.18!14.28!ZBTB16;;chr22:21771656..21771662,+!p1@HIC2!1.18!14.28!HIC2;;chr2:105470714..105470723,+!p@chr2:105470714..105470723,+!1.18!14.28!POU3F3;;chr3:52001396..52001425,-!p4@PCBP4!1.17!24.27!PCBP4;;chr6:126112074..126112144,+!p1@NCOA7!1.14!168.47!NCOA7;;chr2:214016314..214016343,-!p2@IKZF2!1.14!21.42!IKZF2;;chr11:66188503..66188511,+!p1@NPAS4!1.14!12.85!NPAS4;;chr3:52001448..52001478,-!p2@PCBP4!1.11!164.18!PCBP4;;chr7:86781916..86781963,+!p2@DMTF1!1.11!51.40!DMTF1;;chr10:64134120..64134183,+!p1@ZNF365!1.11!14.28!ZNF365;;chr14:73360799..73360817,-!p1@DPF3!1.10!39.98!DPF3;;chr18:56530692..56530723,+!p2@ZNF532!1.10!27.13!ZNF532;;chr1:61547894..61547968,+!p2@NFIA!1.09!32.84!NFIA;;chr1:214161358..214161377,+!p3@PROX1!1.09!11.42!PROX1;;chr21:39870339..39870443,-!p1@ERG!1.09!11.42!ERG;;chr18:76739816..76739822,+!p1@SALL3!1.09!11.42!SALL3;;chr6:41701557..41701578,-!p3@TFEB!1.09!11.42!TFEB;;chr2:16080659..16080685,+!p1@MYCN!1.09!11.42!MYCN;;chr3:147127177..147127194,+!p2@ZIC1!1.09!11.42!ZIC1;;chr19:53636125..53636178,-!p1@ZNF415!1.08!31.41!ZNF415;;chr3:169381420..169381535,-!p1@MECOM!1.08!12.85!MECOM;;chr19:21512144..21512191,-!p2@ZNF708!1.07!49.97!ZNF708;;ch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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!3.21!1607.58!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!3.11!1273.50!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!2.52!418.31!ZNF488;;chr11:61520075..61520136,+!p1@C11orf9!2.45!579.64!C11orf9;;chr22:38380543..38380569,-!p1@SOX10!2.39!246.99!SOX10;;chr21:34442540..34442560,+!p2@OLIG1!2.31!202.73!OLIG1;;chr8:53322304..53322340,-!p1@ST18!2.24!171.32!ST18;;chr2:145277882..145277967,-!p3@ZEB2!2.21!271.26!ZEB2;;chr21:34398234..34398250,+!p1@OLIG2!2.15!141.34!OLIG2;;chr10:134599649..134599653,-!p1@NKX6-2!2.14!135.63!NKX6-2;;chr1:214161272..214161322,+!p1@PROX1!1.94!119.93!PROX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.94!85.66!POU3F3;;chr8:53322347..53322378,-!p2@ST18!1.88!75.67!ST18;;chr19:46801639..46801699,+!p1@HIF3A!1.84!68.53!HIF3A;;chr16:1031762..1031781,+!p1@SOX8!1.83!67.10!SOX8;;chr19:30863271..30863338,+!p1@ZNF536!1.80!62.82!ZNF536;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.79!59.96!PEG3;;chr15:80696703..80696754,+!p1@ARNT2!1.73!69.96!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.70!64.25!PRDM8;;chr10:48359344..48359376,+!p2@ZNF488!1.68!47.11!ZNF488;;chr10:111987079..111987115,+!p3@MXI1!1.67!61.39!MXI1;;chr12:26277956..26277980,-!p1@BHLHE41!1.60!134.20!BHLHE41;;chr12:26277817..26277863,-!p2@BHLHE41!1.60!51.40!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.58!52.82!ZBTB16;;chr19:13135386..13135435,+!p4@NFIX!1.58!37.12!NFIX;;chr22:41763452..41763466,+!p2@TEF!1.56!35.69!TEF;;chr9:114287433..114287513,+!p1@ZNF483!1.55!87.09!ZNF483;;chr16:51185172..51185197,-!p1@SALL1!1.55!34.26!SALL1;;chr7:28725740..28725778,+!p1@CREB5!1.47!242.71!CREB5;;chr19:9879350..9879419,-!p2@ZNF846!1.45!57.11!ZNF846;;chr20:21494654..21494678,-!p2@NKX2-2!1.45!27.13!NKX2-2;;chr2:145275982..145276003,-!p7@ZEB2!1.45!27.13!ZEB2;;chr4:26344778..26344807,+!p8@RBPJ!1.45!27.13!RBPJ;;chr19:13135582..13135600,+!p3@NFIX!1.45!27.13!NFIX;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.43!25.70!POU3F3;;chr7:63505799..63505904,+!p1@ZNF727!1.43!25.70!ZNF727;;chr14:33408072..33408114,+!p2@NPAS3!1.42!29.98!NPAS3;;chr4:26344754..26344772,+!p10@RBPJ!1.40!24.27!RBPJ;;chr7:86781858..86781879,+!p3@DMTF1!1.37!35.69!DMTF1;;chr20:21494684..21494708,-!p1@NKX2-2!1.35!21.42!NKX2-2;;chr20:3388541..3388575,-!p2@C20orf194!1.34!79.95!C20orf194;;chr11:113930291..113930339,+!p2@ZBTB16!1.33!32.84!ZBTB16;;chr12:26277929..26277955,-!p3@BHLHE41!1.33!28.55!BHLHE41;;chr3:147111198..147111225,+!p4@ZIC1!1.32!19.99!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!1.32!19.99!ZIC1;;chrY:21906594..21906622,-!p1@KDM5D!1.32!19.99!KDM5D;;chr2:145277640..145277771,-!p1@ZEB2!1.31!254.13!ZEB2;;chr17:47439437..47439533,-!p1@ZNF652!1.31!152.76!ZNF652;;chr19:21512115..21512135,-!p3@ZNF708!1.29!37.12!ZNF708;;chr2:177053386..177053402,+!p1@HOXD1!1.29!18.56!HOXD1;;chr1:40105299..40105326,-!p1@HEYL!1.29!18.56!HEYL;;chr17:53342311..53342400,+!p1@HLF!1.27!19.99!HLF;;chr20:62680984..62680999,-!p1@SOX18!1.26!22.84!SOX18;;chr9:1050331..1050363,+!p1@DMRT2!1.26!17.13!DMRT2;;chr7:28448965..28448994,+!p2@CREB5!1.25!58.54!CREB5;;chrX:101186981..101187030,-!p1@ZMAT1!1.25!54.25!ZMAT1;;chr1:8877692..8877732,-!p1@RERE!1.23!125.64!RERE;;chr21:34442584..34442587,+!p3@OLIG1!1.22!15.70!OLIG1;;chr16:51185318..51185348,-!p2@SALL1!1.22!15.70!SALL1;;chr6:41701581..41701613,-!p2@TFEB!1.22!15.70!TFEB;;chr12:103351444..103351461,+!p1@ASCL1!1.22!15.70!ASCL1;;chr2:239148671..239148686,-!p1@HES6!1.20!54.25!HES6;;chr3:52001426..52001447,-!p3@PCBP4!1.20!41.40!PCBP4;;chr3:126076242..126076257,-!p1@KLF15!1.20!18.56!KLF15;;chrX:107019163..107019179,-!p7@TSC22D3!1.20!17.13!TSC22D3;;chr6:126070769..126070801,+!p1@HEY2!1.20!17.13!HEY2;;chr12:125003087..125003141,-!p4@NCOR2!1.19!18.56!NCOR2;;chr7:99613250..99613264,+!p2@ZKSCAN1!1.18!41.40!ZKSCAN1;;chr11:113930401..113930422,+!p3@ZBTB16!1.18!14.28!ZBTB16;;chr22:21771656..21771662,+!p1@HIC2!1.18!14.28!HIC2;;chr2:105470714..105470723,+!p@chr2:105470714..105470723,+!1.18!14.28!POU3F3;;chr3:52001396..52001425,-!p4@PCBP4!1.17!24.27!PCBP4;;chr6:126112074..126112144,+!p1@NCOA7!1.14!168.47!NCOA7;;chr2:214016314..214016343,-!p2@IKZF2!1.14!21.42!IKZF2;;chr11:66188503..66188511,+!p1@NPAS4!1.14!12.85!NPAS4;;chr3:52001448..52001478,-!p2@PCBP4!1.11!164.18!PCBP4;;chr7:86781916..86781963,+!p2@DMTF1!1.11!51.40!DMTF1;;chr10:64134120..64134183,+!p1@ZNF365!1.11!14.28!ZNF365;;chr14:73360799..73360817,-!p1@DPF3!1.10!39.98!DPF3;;chr18:56530692..56530723,+!p2@ZNF532!1.10!27.13!ZNF532;;chr1:61547894..61547968,+!p2@NFIA!1.09!32.84!NFIA;;chr1:214161358..214161377,+!p3@PROX1!1.09!11.42!PROX1;;chr21:39870339..39870443,-!p1@ERG!1.09!11.42!ERG;;chr18:76739816..76739822,+!p1@SALL3!1.09!11.42!SALL3;;chr6:41701557..41701578,-!p3@TFEB!1.09!11.42!TFEB;;chr2:16080659..16080685,+!p1@MYCN!1.09!11.42!MYCN;;chr3:147127177..147127194,+!p2@ZIC1!1.09!11.42!ZIC1;;chr19:53636125..53636178,-!p1@ZNF415!1.08!31.41!ZNF415;;chr3:169381420..169381535,-!p1@MECOM!1.08!12.85!MECOM;;chr19:21512144..21512191,-!p2@ZNF708!1.07!49.97!ZNF708;;chr7:28725715..28725727,+!p3@CREB5!1.07!12.85!CREB5;;chr15:41913690..41913753,+!p2@MGA!1.06!25.70!MGA;;chr5:139487363..139487444,+!p1@PURA!1.05!78.52!PURA;;chr15:57210961..57211012,+!p3@TCF12!1.05!32.84!TCF12;;chr19:21512202..21512225,-!p1@ZNF708!1.04!51.40!ZNF708;;chr18:53068911..53068935,-!p4@TCF4!1.04!11.42!TCF4;;chr16:85932760..85932775,+!p1@IRF8!1.04!9.99!IRF8;;chr19:13136057..13136085,+!p11@NFIX!1.04!9.99!NFIX;;chr8:53322384..53322393,-!p7@ST18!1.04!9.99!ST18;;chr8:53322411..53322422,-!p6@ST18!1.04!9.99!ST18;;chr2:95963052..95963106,+!p1@KCNIP3!1.04!9.99!KCNIP3;;chr12:106976774..106976788,+!p1@RFX4!1.04!9.99!RFX4;;chr6:91006518..91006570,-!p1@BACH2!1.03!22.84!BACH2;;chr17:38219209..38219230,+!p1@THRA!1.02!125.64!THRA;;chr4:87928328..87928351,+!p6@AFF1!1.02!25.70!AFF1;;chr19:57019215..57019250,+!p1@ZNF471!1.02!14.28!ZNF471;;chr19:38085768..38085821,+!p1@ZNF540!1.02!14.28!ZNF540;;chr17:17726907..17726958,-!p2@SREBF1!1.01!58.54!SREBF1;;chr16:86544113..86544145,+!p1@FOXF1!1.01!11.42!FOXF1;;chr17:1959369..1959388,+!p2@HIC1!1.00!24.27!HIC1;;chr17:4981745..4981810,+!p1@ZFP3!0.99!44.26!ZFP3;;chr19:57183114..57183145,-!p1@ZNF835!0.99!9.99!ZNF835;;chr1:61548225..61548299,+!p1@NFIA!0.98!114.22!NFIA;;chr19:58446721..58446779,-!p1@ZNF418!0.98!24.27!ZNF418;;chr19:13134772..13134822,+!p2@NFIX!0.98!12.85!NFIX;;chr15:80696410..80696477,+!p6@ARNT2!0.98!8.57!ARNT2;;chr17:53344980..53345011,+!p3@HLF!0.98!8.57!HLF;;chr2:145277833..145277845,-!p16@ZEB2!0.98!8.57!ZEB2;;chr3:181429704..181429722,+!p1@SOX2!0.98!8.57!SOX2;;chr11:113930477..113930488,+!p4@ZBTB16!0.98!8.57!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!0.98!8.57!NPAS3;;chr8:55370487..55370503,+!p1@SOX17!0.98!8.57!SOX17;;chr19:57352109..57352153,-!p2@ZIM2!0.98!8.57!ZIM2;;chr20:21494602..21494622,-!p3@NKX2-2!0.98!8.57!NKX2-2;;chr19:13134457..13134462,+!p5@NFIX!0.95!14.28!NFIX;;chrX:84499081..84499115,+!p2@ZNF711!0.94!11.42!ZNF711;;chr15:31618903..31618962,+!p3@KLF13!0.93!21.42!KLF13;;chr1:61548069..61548102,+!p3@NFIA!0.93!18.56!NFIA;;chr5:124080203..124080258,-!p5@ZNF608!0.93!8.57!ZNF608;;chr9:73029219..73029289,-!p2@KLF9!0.92!22.84!KLF9;;chr11:8102846..8102892,+!p1@TUB!0.91!9.99!TUB;;chr10:118897775..118897786,-!p2@VAX1!0.91!7.14!VAX1;;chr12:52437488..52437507,+!p2@NR4A1!0.91!7.14!NR4A1;;chr14:74256981..74256994,-!p16@C14orf43!0.91!7.14!C14orf43;;chr17:53344945..53344977,+!p2@HLF!0.91!7.14!HLF;;chr18:6414849..6414876,-!p2@L3MBTL4!0.91!7.14!L3MBTL4;;chr2:145277589..145277612,-!p12@ZEB2!0.91!7.14!ZEB2;;chr2:24714729..24714761,+!p1@NCOA1!0.91!7.14!NCOA1;;chr5:124081979..124082021,-!p7@ZNF608!0.91!7.14!ZNF608;;chr19:58545454..58545498,+!p1@ZSCAN1!0.91!7.14!ZSCAN1;;chr20:23342623..23342652,+!p2@GZF1!0.91!7.14!GZF1;;chr2:145274900..145274934,-!p4@ZEB2!0.90!44.26!ZEB2;;chr4:38665883..38665922,+!p3@KLF3!0.90!27.13!KLF3;;chr6:85474299..85474324,-!p1@TBX18!0.90!12.85!TBX18;;chr3:141105705..141105770,+!p4@ZBTB38!0.90!8.57!ZBTB38;;chr21:47063625..47063658,+!p1@PCBP3!0.88!29.98!PCBP3;;chr9:115818951..115819011,-!p1@ZFP37!0.88!21.42!ZFP37;;chr19:12476469..12476509,-!p2@ZNF442!0.88!11.42!ZNF442;;chr11:62369806..62369837,-!p8@MTA2!0.88!8.57!MTA2;;chr13:41240717..41240735,-!p2@FOXO1!0.87!45.69!FOXO1;;chr6:41703296..41703367,-!p1@TFEB!0.87!34.26!TFEB;;chr2:66662249..66662267,+!p2@MEIS1!0.87!25.70!MEIS1;;chr19:12444519..12444537,-!p3@ZNF563!0.87!9.99!ZNF563;;chr2:46612334..46612349,+!p6@EPAS1!0.87!8.57!EPAS1;;chr19:36705547..36705597,-!p1@ZNF565!0.86!17.13!ZNF565;;chr7:55955139..55955190,+!p1@ZNF713,p2@MRPS17!0.86!17.13!ZNF713;;chr18:22932080..22932170,-!p1@ZNF521!0.85!27.13!ZNF521;;chr15:61521417..61521460,-!p2@RORA!0.85!14.28!RORA;;chr5:124084493..124084524,-!p2@ZNF608!0.85!14.28!ZNF608;;chrX:107018969..107019024,-!p6@TSC22D3!0.85!8.57!TSC22D3;;chr6:168227552..168227609,+!p1@MLLT4!0.84!51.40!MLLT4;;chr2:74229812..74229867,+!p1@TET3!0.84!15.70!TET3;;chr19:58281014..58281074,+!p1@ZNF586!0.83!49.97!ZNF586;;chr2:178257401..178257432,-!p4@NFE2L2!0.83!34.26!NFE2L2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.83!5.71!TFCP2L1;;chr2:68592406..68592424,+!p1@PLEK!0.83!5.71!PLEK;;chr3:128212033..128212051,-!p1@GATA2!0.83!5.71!GATA2;;chr5:71803177..71803255,-!p1@ZNF366!0.83!5.71!ZNF366;;chr7:1577076..1577095,+!p5@MAFK!0.83!5.71!MAFK;;chr7:28763873..28763898,+!p7@CREB5!0.83!5.71!CREB5;;chr10:111985777..111985788,+!p4@MXI1!0.83!5.71!MXI1;;chr10:118897716..118897727,-!p7@VAX1!0.83!5.71!VAX1;;chr10:118897911..118897974,-!p1@VAX1!0.83!5.71!VAX1;;chr10:64134045..64134083,+!p3@ZNF365!0.83!5.71!ZNF365;;chr11:111320724..111320741,-!p2@POU2AF1!0.83!5.71!POU2AF1;;chr11:47400078..47400106,-!p1@SPI1!0.83!5.71!SPI1;;chr12:26277798..26277809,-!p5@BHLHE41!0.83!5.71!BHLHE41;;chr19:46800289..46800327,+!p2@HIF3A!0.83!5.71!HIF3A;;chr19:54041669..54041697,+!p2@ZNF331!0.83!5.71!ZNF331;;chr19:58545369..58545404,+!p2@ZSCAN1!0.83!5.71!ZSCAN1;;chr21:34442230..34442249,+!p4@OLIG1!0.83!5.71!OLIG1;;chr15:57211318..57211355,+!p10@TCF12!0.83!5.71!TCF12;;chr15:80696666..80696700,+!p4@ARNT2!0.83!5.71!ARNT2;;chr15:80733570..80733659,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000966;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001781 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0003056,UBERON:0005425,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10277-104E7 | |id=FF:10277-104E7 | ||
|is_a=EFO:0002091;;FF:0011166 | |is_a=EFO:0002091;;FF:0011166 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13449 | |||
|library_id_phase_based=2:CNhs13449 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10277 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10277 | |||
|name=optic nerve, donor1 | |name=optic nerve, donor1 | ||
|namespace= | |namespace= | ||
Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13449,LSID1024,release012,COMPLETED | |profile_hcage=CNhs13449,LSID1024,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=104 | |rna_box=104 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 55: | Line 76: | ||
|rna_rin=5.1 | |rna_rin=5.1 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.04E+09 | ||
|rna_weight_ug=5.43132 | |rna_weight_ug=5.43132 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 79: | Line 101: | ||
|top_motifs=SOX5:4.13144263399;XBP1:3.39925162705;FOXP1:3.35703831675;SOX2:3.21708074801;SOX{8,9,10}:2.78492918536;SOX17:2.6415170472;NHLH1,2:2.52816275447;ALX1:2.52325823014;ZFP161:2.33053831227;MED-1{core}:2.29442742394;HIC1:2.20438552043;POU6F1:2.10179868527;NFIX:2.02410277264;MTE{core}:1.90636895714;ATF2:1.86057087796;REST:1.85529823367;EP300:1.84996969601;NKX3-2:1.8188092907;RBPJ:1.75503568712;CUX2:1.75154924392;NANOG:1.71459697365;GATA4:1.57321761671;TFAP2B:1.54045186022;FOXO1,3,4:1.52666501648;PITX1..3:1.52411098805;DBP:1.52383188092;TFAP2{A,C}:1.51569693826;FOX{F1,F2,J1}:1.51042985211;MYFfamily:1.4426149886;BREu{core}:1.440189532;AR:1.43106566501;LMO2:1.42197589907;ZBTB6:1.39902290763;ZNF423:1.37445858437;PAX6:1.3743219776;FOX{D1,D2}:1.36415865776;ZNF384:1.36033041134;HOX{A6,A7,B6,B7}:1.35822194089;JUN:1.3566118354;HOXA9_MEIS1:1.27532052978;PRRX1,2:1.25551791303;SMAD1..7,9:1.24691891658;GTF2I:1.20361817032;NR3C1:1.16587724334;TGIF1:1.1411682337;FOXP3:1.11673050414;HBP1_HMGB_SSRP1_UBTF:1.07142245432;CRX:1.06811120577;MTF1:1.04380395086;SPZ1:1.01756691919;FOXQ1:0.992985386611;MZF1:0.963811068726;MAZ:0.907589284293;LEF1_TCF7_TCF7L1,2:0.874060702781;PATZ1:0.80758664775;BPTF:0.804487314832;MYBL2:0.792269905084;RREB1:0.7497198474;EBF1:0.707960533031;SREBF1,2:0.667536667715;OCT4_SOX2{dimer}:0.65349348434;PAX5:0.626871738594;EGR1..3:0.558927456405;RFX2..5_RFXANK_RFXAP:0.546408719122;MAFB:0.54613892089;GFI1B:0.539468031921;NKX6-1,2:0.53020697864;CREB1:0.520610967834;POU3F1..4:0.517246876791;NKX2-2,8:0.50542659189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.446678001111;ZBTB16:0.439669924314;RFX1:0.420595462329;TFDP1:0.415702008118;STAT2,4,6:0.310532020872;FOXM1:0.303121645915;NRF1:0.282971882932;ZNF143:0.251312694523;KLF4:0.20955530633;ZIC1..3:0.194281809409;IKZF2:0.18208908923;STAT5{A,B}:0.151473463178;FOXD3:0.148419179436;PAX4:0.139737022263;TLX1..3_NFIC{dimer}:0.131947243611;IRF7:0.106417803942;SP1:0.0869042488164;GZF1:0.0859636867878;RORA:0.0824054713477;TOPORS:0.0779700978945;LHX3,4:0.0773212422058;TBX4,5:0.0757616062024;ZNF238:0.074094665239;ARID5B:0.0685940459879;GCM1,2:0.0425087883358;PRDM1:0.0327407614336;ADNP_IRX_SIX_ZHX:0.00168516431372;HMGA1,2:-0.00945314607689;YY1:-0.033249502505;CDC5L:-0.0394822359827;TFAP4:-0.0399626835382;GTF2A1,2:-0.0426177082178;NR5A1,2:-0.061925513117;HOX{A4,D4}:-0.0800508550272;NKX2-3_NKX2-5:-0.0828609221395;HMX1:-0.121943380433;STAT1,3:-0.128010770578;AHR_ARNT_ARNT2:-0.138141045895;ESRRA:-0.142926275917;FOX{I1,J2}:-0.149100938212;NFIL3:-0.181397184074;RXR{A,B,G}:-0.186084632812;ATF5_CREB3:-0.206661211277;HNF4A_NR2F1,2:-0.236571741397;GATA6:-0.253913083001;NFATC1..3:-0.276810904882;ONECUT1,2:-0.283993233898;TAL1_TCF{3,4,12}:-0.289238696921;PDX1:-0.319099538959;MEF2{A,B,C,D}:-0.338578004674;IRF1,2:-0.346201966395;EVI1:-0.367875033125;HNF1A:-0.395681760686;TFCP2:-0.412028987462;NANOG{mouse}:-0.414998493189;PAX2:-0.452504785688;ZEB1:-0.454813131542;FOXN1:-0.458216680255;PBX1:-0.475746271344;POU5F1:-0.476011909354;HES1:-0.496074394093;IKZF1:-0.506038981138;NKX2-1,4:-0.531847975302;TBP:-0.546145727548;HAND1,2:-0.569039626141;ATF6:-0.569251640316;PAX1,9:-0.574765179058;NFY{A,B,C}:-0.581076803123;NFE2:-0.58440995363;TEAD1:-0.595352073255;ETS1,2:-0.601116706478;CEBPA,B_DDIT3:-0.617312129607;ESR1:-0.621120155099;SRF:-0.658628663542;SPIB:-0.659537719023;XCPE1{core}:-0.660445687648;FOXL1:-0.674840321043;FOSL2:-0.698825098819;TP53:-0.715323056028;NFE2L2:-0.726317582625;FOXA2:-0.730473532194;FOS_FOS{B,L1}_JUN{B,D}:-0.734471318966;HLF:-0.740040932693;NKX3-1:-0.746799839008;ALX4:-0.749303522578;T:-0.755771108223;BACH2:-0.770026302836;CDX1,2,4:-0.779909908293;UFEwm:-0.789249832297;ATF4:-0.790487745377;TEF:-0.795582547086;MYOD1:-0.811292641523;NFE2L1:-0.841191367557;TLX2:-0.876073330309;SPI1:-0.953334248793;RUNX1..3:-0.959683188528;POU1F1:-0.962701789915;POU2F1..3:-0.96644561159;GFI1:-0.97499100086;NFKB1_REL_RELA:-0.992158926087;SNAI1..3:-1.01330586878;HIF1A:-1.02192816242;DMAP1_NCOR{1,2}_SMARC:-1.05946828159;ELF1,2,4:-1.09418563647;PAX8:-1.09648107318;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10331155255;AIRE:-1.14323762651;MYB:-1.18928851903;E2F1..5:-1.20703829632;VSX1,2:-1.23028327382;NR6A1:-1.33321544889;ELK1,4_GABP{A,B1}:-1.35680960174;bHLH_family:-1.44710578243;GLI1..3:-1.50337522868;PAX3,7:-1.56858768556;ZNF148:-1.60962899358;NR1H4:-1.70579982267;RXRA_VDR{dimer}:-1.76205880984;HSF1,2:-1.9966143511;EN1,2:-2.07372290766;HOX{A5,B5}:-2.09022899375;PPARG:-2.91062579172 | |top_motifs=SOX5:4.13144263399;XBP1:3.39925162705;FOXP1:3.35703831675;SOX2:3.21708074801;SOX{8,9,10}:2.78492918536;SOX17:2.6415170472;NHLH1,2:2.52816275447;ALX1:2.52325823014;ZFP161:2.33053831227;MED-1{core}:2.29442742394;HIC1:2.20438552043;POU6F1:2.10179868527;NFIX:2.02410277264;MTE{core}:1.90636895714;ATF2:1.86057087796;REST:1.85529823367;EP300:1.84996969601;NKX3-2:1.8188092907;RBPJ:1.75503568712;CUX2:1.75154924392;NANOG:1.71459697365;GATA4:1.57321761671;TFAP2B:1.54045186022;FOXO1,3,4:1.52666501648;PITX1..3:1.52411098805;DBP:1.52383188092;TFAP2{A,C}:1.51569693826;FOX{F1,F2,J1}:1.51042985211;MYFfamily:1.4426149886;BREu{core}:1.440189532;AR:1.43106566501;LMO2:1.42197589907;ZBTB6:1.39902290763;ZNF423:1.37445858437;PAX6:1.3743219776;FOX{D1,D2}:1.36415865776;ZNF384:1.36033041134;HOX{A6,A7,B6,B7}:1.35822194089;JUN:1.3566118354;HOXA9_MEIS1:1.27532052978;PRRX1,2:1.25551791303;SMAD1..7,9:1.24691891658;GTF2I:1.20361817032;NR3C1:1.16587724334;TGIF1:1.1411682337;FOXP3:1.11673050414;HBP1_HMGB_SSRP1_UBTF:1.07142245432;CRX:1.06811120577;MTF1:1.04380395086;SPZ1:1.01756691919;FOXQ1:0.992985386611;MZF1:0.963811068726;MAZ:0.907589284293;LEF1_TCF7_TCF7L1,2:0.874060702781;PATZ1:0.80758664775;BPTF:0.804487314832;MYBL2:0.792269905084;RREB1:0.7497198474;EBF1:0.707960533031;SREBF1,2:0.667536667715;OCT4_SOX2{dimer}:0.65349348434;PAX5:0.626871738594;EGR1..3:0.558927456405;RFX2..5_RFXANK_RFXAP:0.546408719122;MAFB:0.54613892089;GFI1B:0.539468031921;NKX6-1,2:0.53020697864;CREB1:0.520610967834;POU3F1..4:0.517246876791;NKX2-2,8:0.50542659189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.446678001111;ZBTB16:0.439669924314;RFX1:0.420595462329;TFDP1:0.415702008118;STAT2,4,6:0.310532020872;FOXM1:0.303121645915;NRF1:0.282971882932;ZNF143:0.251312694523;KLF4:0.20955530633;ZIC1..3:0.194281809409;IKZF2:0.18208908923;STAT5{A,B}:0.151473463178;FOXD3:0.148419179436;PAX4:0.139737022263;TLX1..3_NFIC{dimer}:0.131947243611;IRF7:0.106417803942;SP1:0.0869042488164;GZF1:0.0859636867878;RORA:0.0824054713477;TOPORS:0.0779700978945;LHX3,4:0.0773212422058;TBX4,5:0.0757616062024;ZNF238:0.074094665239;ARID5B:0.0685940459879;GCM1,2:0.0425087883358;PRDM1:0.0327407614336;ADNP_IRX_SIX_ZHX:0.00168516431372;HMGA1,2:-0.00945314607689;YY1:-0.033249502505;CDC5L:-0.0394822359827;TFAP4:-0.0399626835382;GTF2A1,2:-0.0426177082178;NR5A1,2:-0.061925513117;HOX{A4,D4}:-0.0800508550272;NKX2-3_NKX2-5:-0.0828609221395;HMX1:-0.121943380433;STAT1,3:-0.128010770578;AHR_ARNT_ARNT2:-0.138141045895;ESRRA:-0.142926275917;FOX{I1,J2}:-0.149100938212;NFIL3:-0.181397184074;RXR{A,B,G}:-0.186084632812;ATF5_CREB3:-0.206661211277;HNF4A_NR2F1,2:-0.236571741397;GATA6:-0.253913083001;NFATC1..3:-0.276810904882;ONECUT1,2:-0.283993233898;TAL1_TCF{3,4,12}:-0.289238696921;PDX1:-0.319099538959;MEF2{A,B,C,D}:-0.338578004674;IRF1,2:-0.346201966395;EVI1:-0.367875033125;HNF1A:-0.395681760686;TFCP2:-0.412028987462;NANOG{mouse}:-0.414998493189;PAX2:-0.452504785688;ZEB1:-0.454813131542;FOXN1:-0.458216680255;PBX1:-0.475746271344;POU5F1:-0.476011909354;HES1:-0.496074394093;IKZF1:-0.506038981138;NKX2-1,4:-0.531847975302;TBP:-0.546145727548;HAND1,2:-0.569039626141;ATF6:-0.569251640316;PAX1,9:-0.574765179058;NFY{A,B,C}:-0.581076803123;NFE2:-0.58440995363;TEAD1:-0.595352073255;ETS1,2:-0.601116706478;CEBPA,B_DDIT3:-0.617312129607;ESR1:-0.621120155099;SRF:-0.658628663542;SPIB:-0.659537719023;XCPE1{core}:-0.660445687648;FOXL1:-0.674840321043;FOSL2:-0.698825098819;TP53:-0.715323056028;NFE2L2:-0.726317582625;FOXA2:-0.730473532194;FOS_FOS{B,L1}_JUN{B,D}:-0.734471318966;HLF:-0.740040932693;NKX3-1:-0.746799839008;ALX4:-0.749303522578;T:-0.755771108223;BACH2:-0.770026302836;CDX1,2,4:-0.779909908293;UFEwm:-0.789249832297;ATF4:-0.790487745377;TEF:-0.795582547086;MYOD1:-0.811292641523;NFE2L1:-0.841191367557;TLX2:-0.876073330309;SPI1:-0.953334248793;RUNX1..3:-0.959683188528;POU1F1:-0.962701789915;POU2F1..3:-0.96644561159;GFI1:-0.97499100086;NFKB1_REL_RELA:-0.992158926087;SNAI1..3:-1.01330586878;HIF1A:-1.02192816242;DMAP1_NCOR{1,2}_SMARC:-1.05946828159;ELF1,2,4:-1.09418563647;PAX8:-1.09648107318;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10331155255;AIRE:-1.14323762651;MYB:-1.18928851903;E2F1..5:-1.20703829632;VSX1,2:-1.23028327382;NR6A1:-1.33321544889;ELK1,4_GABP{A,B1}:-1.35680960174;bHLH_family:-1.44710578243;GLI1..3:-1.50337522868;PAX3,7:-1.56858768556;ZNF148:-1.60962899358;NR1H4:-1.70579982267;RXRA_VDR{dimer}:-1.76205880984;HSF1,2:-1.9966143511;EN1,2:-2.07372290766;HOX{A5,B5}:-2.09022899375;PPARG:-2.91062579172 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10277-104E7;search_select_hide=table117:FF:10277-104E7 | |||
}} | }} |
Latest revision as of 13:57, 3 June 2020
Name: | optic nerve, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13449 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13449
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13449
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.308 |
10 | 10 | 0.134 |
100 | 100 | 0.788 |
101 | 101 | 0.634 |
102 | 102 | 0.651 |
103 | 103 | 0.0219 |
104 | 104 | 0.0227 |
105 | 105 | 0.0587 |
106 | 106 | 0.108 |
107 | 107 | 0.513 |
108 | 108 | 0.574 |
109 | 109 | 0.00263 |
11 | 11 | 0.0122 |
110 | 110 | 0.0553 |
111 | 111 | 0.695 |
112 | 112 | 0.44 |
113 | 113 | 0.0204 |
114 | 114 | 0.49 |
115 | 115 | 0.419 |
116 | 116 | 0.235 |
117 | 117 | 0.0146 |
118 | 118 | 0.369 |
119 | 119 | 0.845 |
12 | 12 | 0.374 |
120 | 120 | 0.0328 |
121 | 121 | 0.848 |
122 | 122 | 0.907 |
123 | 123 | 0.00103 |
124 | 124 | 0.536 |
125 | 125 | 0.913 |
126 | 126 | 0.145 |
127 | 127 | 0.195 |
128 | 128 | 0.698 |
129 | 129 | 0.942 |
13 | 13 | 0.00522 |
130 | 130 | 0.0568 |
131 | 131 | 0.0035 |
132 | 132 | 0.437 |
133 | 133 | 0.114 |
134 | 134 | 0.444 |
135 | 135 | 0.879 |
136 | 136 | 0.0031 |
137 | 137 | 0.294 |
138 | 138 | 0.463 |
139 | 139 | 0.73 |
14 | 14 | 0.93 |
140 | 140 | 0.179 |
141 | 141 | 0.881 |
142 | 142 | 0.497 |
143 | 143 | 0.0808 |
144 | 144 | 0.305 |
145 | 145 | 0.792 |
146 | 146 | 0.926 |
147 | 147 | 0.985 |
148 | 148 | 0.882 |
149 | 149 | 0.177 |
15 | 15 | 0.102 |
150 | 150 | 0.0808 |
151 | 151 | 0.942 |
152 | 152 | 0.0906 |
153 | 153 | 0.297 |
154 | 154 | 0.141 |
155 | 155 | 0.771 |
156 | 156 | 0.493 |
157 | 157 | 0.434 |
158 | 158 | 0.351 |
159 | 159 | 0.0765 |
16 | 16 | 0.0549 |
160 | 160 | 0.347 |
161 | 161 | 0.329 |
162 | 162 | 0.526 |
163 | 163 | 0.798 |
164 | 164 | 0.015 |
165 | 165 | 0.0999 |
166 | 166 | 0.821 |
167 | 167 | 0.229 |
168 | 168 | 0.67 |
169 | 169 | 0.109 |
17 | 17 | 0.178 |
18 | 18 | 0.113 |
19 | 19 | 0.445 |
2 | 2 | 0.737 |
20 | 20 | 0.185 |
21 | 21 | 0.161 |
22 | 22 | 0.237 |
23 | 23 | 0.793 |
24 | 24 | 0.0022 |
25 | 25 | 0.467 |
26 | 26 | 0.143 |
27 | 27 | 0.297 |
28 | 28 | 0.936 |
29 | 29 | 5.1869e-4 |
3 | 3 | 0.0842 |
30 | 30 | 0.597 |
31 | 31 | 0.766 |
32 | 32 | 0.0243 |
33 | 33 | 0.15 |
34 | 34 | 0.667 |
35 | 35 | 0.749 |
36 | 36 | 0.583 |
37 | 37 | 0.0315 |
38 | 38 | 0.615 |
39 | 39 | 0.465 |
4 | 4 | 0.635 |
40 | 40 | 0.196 |
41 | 41 | 0.605 |
42 | 42 | 0.421 |
43 | 43 | 0.287 |
44 | 44 | 0.00703 |
45 | 45 | 0.824 |
46 | 46 | 0.085 |
47 | 47 | 0.0787 |
48 | 48 | 0.055 |
49 | 49 | 0.49 |
5 | 5 | 0.455 |
50 | 50 | 0.629 |
51 | 51 | 0.607 |
52 | 52 | 0.976 |
53 | 53 | 0.14 |
54 | 54 | 0.908 |
55 | 55 | 0.831 |
56 | 56 | 0.936 |
57 | 57 | 0.815 |
58 | 58 | 0.286 |
59 | 59 | 0.0326 |
6 | 6 | 0.55 |
60 | 60 | 0.203 |
61 | 61 | 0.13 |
62 | 62 | 0.135 |
63 | 63 | 0.96 |
64 | 64 | 0.178 |
65 | 65 | 0.381 |
66 | 66 | 0.0837 |
67 | 67 | 0.676 |
68 | 68 | 0.206 |
69 | 69 | 0.435 |
7 | 7 | 0.135 |
70 | 70 | 0.713 |
71 | 71 | 0.00806 |
72 | 72 | 0.0678 |
73 | 73 | 0.0226 |
74 | 74 | 0.79 |
75 | 75 | 0.0104 |
76 | 76 | 0.685 |
77 | 77 | 0.1 |
78 | 78 | 0.0165 |
79 | 79 | 0.15 |
8 | 8 | 0.104 |
80 | 80 | 0.324 |
81 | 81 | 0.532 |
82 | 82 | 0.96 |
83 | 83 | 0.0247 |
84 | 84 | 0.49 |
85 | 85 | 0.351 |
86 | 86 | 0.21 |
87 | 87 | 0.00108 |
88 | 88 | 0.578 |
89 | 89 | 0.128 |
9 | 9 | 0.252 |
90 | 90 | 0.626 |
91 | 91 | 0.363 |
92 | 92 | 0.668 |
93 | 93 | 0.569 |
94 | 94 | 0.466 |
95 | 95 | 0.00285 |
96 | 96 | 0.274 |
97 | 97 | 0.88 |
98 | 98 | 0.426 |
99 | 99 | 0.761 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13449
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011166 human optic nerve sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000941 (cranial nerve II)
0003714 (neural tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0005162 (multi cell component structure)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0001785 (cranial nerve)
0002464 (nerve trunk)
0004904 (nerve connecting eye with brain)
0000122 (neuron projection bundle)
0001021 (nerve)
0004732 (segmental subdivision of nervous system)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)
0002104 (visual system)
0004456 (entire sense organ system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011166 (human optic nerve sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0005425 (presumptive neural retina)
UBERON:0010316 (germ layer / neural crest)