FF:10647-109A8: Difference between revisions

Latest revision as of 14:32, 3 June 2020

Name:	lens epithelial cell line:SRA 01/04
Species:	Human (Homo sapiens)
Library ID:	CNhs11750
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	eye
dev stage	NA
sex	male
age	3 months
cell type	lens epithelial cell
cell line	SRA 01/04
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005182

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11750		CAGE		DRX007918		DRR008790

Accession ID Hg19

Library id		BAM		CTSS
CNhs11750		DRZ000215		DRZ001600

Accession ID Hg38

Library id		BAM		CTSS
CNhs11750		DRZ011565		DRZ012950

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0925
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.419
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0525
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0657
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0559
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0627
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.174
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0785
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.482
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.305
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.342
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11750

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0267
MA0003.1	MA0003.1	0.545
MA0004.1	MA0004.1	0.0865
MA0006.1	MA0006.1	0.728
MA0007.1	MA0007.1	0.728
MA0009.1	MA0009.1	0.699
MA0014.1	MA0014.1	0.127
MA0017.1	MA0017.1	0.0986
MA0018.2	MA0018.2	0.907
MA0019.1	MA0019.1	0.165
MA0024.1	MA0024.1	1.94636e-8
MA0025.1	MA0025.1	0.452
MA0027.1	MA0027.1	0.968
MA0028.1	MA0028.1	0.309
MA0029.1	MA0029.1	0.471
MA0030.1	MA0030.1	0.123
MA0031.1	MA0031.1	0.925
MA0035.2	MA0035.2	0.402
MA0038.1	MA0038.1	4.46942e-5
MA0039.2	MA0039.2	0.184
MA0040.1	MA0040.1	0.865
MA0041.1	MA0041.1	0.0625
MA0042.1	MA0042.1	0.212
MA0043.1	MA0043.1	0.336
MA0046.1	MA0046.1	0.537
MA0047.2	MA0047.2	0.516
MA0048.1	MA0048.1	0.615
MA0050.1	MA0050.1	2.61657e-4
MA0051.1	MA0051.1	0.00286
MA0052.1	MA0052.1	0.022
MA0055.1	MA0055.1	0.283
MA0057.1	MA0057.1	0.527
MA0058.1	MA0058.1	0.159
MA0059.1	MA0059.1	0.539
MA0060.1	MA0060.1	8.06324e-6
MA0061.1	MA0061.1	0.197
MA0062.2	MA0062.2	0.405
MA0065.2	MA0065.2	0.124
MA0066.1	MA0066.1	0.769
MA0067.1	MA0067.1	0.117
MA0068.1	MA0068.1	0.542
MA0069.1	MA0069.1	0.0634
MA0070.1	MA0070.1	0.734
MA0071.1	MA0071.1	0.365
MA0072.1	MA0072.1	0.28
MA0073.1	MA0073.1	0.707
MA0074.1	MA0074.1	0.956
MA0076.1	MA0076.1	0.154
MA0077.1	MA0077.1	0.641
MA0078.1	MA0078.1	0.647
MA0079.2	MA0079.2	0.307
MA0080.2	MA0080.2	2.76046e-7
MA0081.1	MA0081.1	0.433
MA0083.1	MA0083.1	0.607
MA0084.1	MA0084.1	0.514
MA0087.1	MA0087.1	0.98
MA0088.1	MA0088.1	0.82
MA0090.1	MA0090.1	0.0376
MA0091.1	MA0091.1	0.214
MA0092.1	MA0092.1	0.437
MA0093.1	MA0093.1	0.0515
MA0099.2	MA0099.2	9.12035e-7
MA0100.1	MA0100.1	0.11
MA0101.1	MA0101.1	0.357
MA0102.2	MA0102.2	0.00231
MA0103.1	MA0103.1	0.417
MA0104.2	MA0104.2	0.809
MA0105.1	MA0105.1	0.0105
MA0106.1	MA0106.1	0.826
MA0107.1	MA0107.1	0.678
MA0108.2	MA0108.2	3.05525e-4
MA0111.1	MA0111.1	0.236
MA0112.2	MA0112.2	7.84827e-4
MA0113.1	MA0113.1	0.814
MA0114.1	MA0114.1	0.344
MA0115.1	MA0115.1	0.749
MA0116.1	MA0116.1	7.32257e-4
MA0117.1	MA0117.1	0.497
MA0119.1	MA0119.1	0.103
MA0122.1	MA0122.1	0.294
MA0124.1	MA0124.1	0.485
MA0125.1	MA0125.1	0.439
MA0131.1	MA0131.1	0.16
MA0135.1	MA0135.1	0.585
MA0136.1	MA0136.1	0.00787
MA0137.2	MA0137.2	0.293
MA0138.2	MA0138.2	0.029
MA0139.1	MA0139.1	0.0587
MA0140.1	MA0140.1	0.972
MA0141.1	MA0141.1	0.235
MA0142.1	MA0142.1	0.839
MA0143.1	MA0143.1	0.241
MA0144.1	MA0144.1	0.129
MA0145.1	MA0145.1	0.215
MA0146.1	MA0146.1	0.2
MA0147.1	MA0147.1	0.841
MA0148.1	MA0148.1	0.935
MA0149.1	MA0149.1	0.683
MA0150.1	MA0150.1	0.763
MA0152.1	MA0152.1	0.916
MA0153.1	MA0153.1	0.855
MA0154.1	MA0154.1	0.0312
MA0155.1	MA0155.1	0.398
MA0156.1	MA0156.1	0.557
MA0157.1	MA0157.1	0.302
MA0159.1	MA0159.1	0.186
MA0160.1	MA0160.1	0.391
MA0162.1	MA0162.1	0.241
MA0163.1	MA0163.1	0.00295
MA0164.1	MA0164.1	0.793
MA0258.1	MA0258.1	0.255
MA0259.1	MA0259.1	0.862

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11750

Novel motif	Logo	P-value
1	1	0.0612
10	10	0.227
100	100	0.986
101	101	0.328
102	102	0.161
103	103	0.757
104	104	0.81
105	105	0.767
106	106	0.00729
107	107	0.313
108	108	0.791
109	109	0.716
11	11	0.248
110	110	0.227
111	111	0.424
112	112	0.123
113	113	0.00403
114	114	0.15
115	115	0.409
116	116	0.0843
117	117	0.3
118	118	0.966
119	119	0.123
12	12	0.864
120	120	0.283
121	121	0.327
122	122	0.18
123	123	0.0632
124	124	0.262
125	125	0.554
126	126	0.0687
127	127	0.747
128	128	0.0179
129	129	0.409
13	13	0.297
130	130	0.16
131	131	0.0332
132	132	0.502
133	133	0.635
134	134	0.395
135	135	0.00808
136	136	0.857
137	137	0.31
138	138	0.856
139	139	0.0202
14	14	0.509
140	140	0.209
141	141	0.956
142	142	0.881
143	143	0.524
144	144	0.983
145	145	0.233
146	146	0.983
147	147	0.456
148	148	1.16048e-4
149	149	0.06
15	15	0.397
150	150	0.569
151	151	0.309
152	152	0.131
153	153	0.112
154	154	0.713
155	155	0.283
156	156	0.432
157	157	0.622
158	158	0.273
159	159	0.138
16	16	0.43
160	160	0.0311
161	161	0.304
162	162	0.457
163	163	0.767
164	164	0.893
165	165	0.153
166	166	0.673
167	167	0.247
168	168	0.144
169	169	0.0109
17	17	0.329
18	18	0.59
19	19	0.155
2	2	0.703
20	20	0.257
21	21	0.149
22	22	0.315
23	23	0.81
24	24	0.618
25	25	0.209
26	26	0.801
27	27	0.0158
28	28	0.52
29	29	0.427
3	3	0.0728
30	30	0.882
31	31	0.459
32	32	0.171
33	33	0.509
34	34	0.393
35	35	0.402
36	36	0.401
37	37	0.272
38	38	0.659
39	39	0.569
4	4	0.207
40	40	0.868
41	41	0.464
42	42	0.314
43	43	0.123
44	44	0.395
45	45	0.871
46	46	0.1
47	47	0.626
48	48	0.133
49	49	0.241
5	5	0.416
50	50	0.913
51	51	0.802
52	52	0.353
53	53	0.185
54	54	0.877
55	55	0.749
56	56	0.973
57	57	0.296
58	58	0.0161
59	59	0.0507
6	6	0.317
60	60	0.0191
61	61	0.78
62	62	0.0189
63	63	0.182
64	64	0.204
65	65	0.472
66	66	0.011
67	67	0.421
68	68	0.469
69	69	0.442
7	7	0.339
70	70	0.382
71	71	0.617
72	72	0.491
73	73	0.0845
74	74	0.897
75	75	0.245
76	76	0.786
77	77	0.201
78	78	0.134
79	79	0.185
8	8	0.152
80	80	0.472
81	81	0.257
82	82	0.00413
83	83	0.21
84	84	0.567
85	85	0.018
86	86	0.465
87	87	0.634
88	88	0.571
89	89	0.0402
9	9	0.303
90	90	0.351
91	91	0.555
92	92	0.067
93	93	0.507
94	94	0.576
95	95	0.471
96	96	0.419
97	97	0.205
98	98	0.864
99	99	0.994

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11750

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0002224 lens epithelial cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103071 HLEC-SRA 01/04 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000306 (crystallin accumulating cell)
0002222 (vertebrate lens cell)
0002224 (lens epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0010077 (cuboidal epithelium)
0005389 (transparent eye structure)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0000484 (simple cuboidal epithelium)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000965 (lens of camera-type eye)
0001803 (epithelium of lens)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101120 (epithelial cell line sample)
0101874 (lens epithelial cell line sample)
0103071 (HLEC-SRA 01/04 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000047,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001444,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0010077,UBERON:0005291,UBERON:0005389,UBERON:0000020,UBERON:0007625,UBERON:0000484,UBERON:0001032,UBERON:0005085,UBERON:0002546,UBERON:0001048,UBERON:0006598,UBERON:0002532,UBERON:0000965,UBERON:0001803,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0000076,UBERON:0003075,UBERON:0003056,UBERON:0003072,UBERON:0003071,UBERON:0006601,UBERON:0003073,UBERON:0005426,UBERON:0004128,UBERON:0007284
+|DRA_sample_Accession=CAGE@SAMD00005182
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0000063,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000004,CL:0000255,CL:0000306,CL:0002222,CL:0002224
+|accession_numbers=CAGE;DRX007918;DRR008790;DRZ000215;DRZ001600;DRZ011565;DRZ012950
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0010077,UBERON:0005389,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0000484,UBERON:0001032,UBERON:0010317,UBERON:0000965,UBERON:0001803,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000255,CL:0000306,CL:0002222,CL:0002224
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101120,FF:0101874,FF:0103071
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:10412600..10412637,-!p1@TFAP2A!1.54!55.08!TFAP2A;;chr4:81118647..81118666,+!p1@PRDM8!1.52!41.91!PRDM8;;chr6:10412392..10412409,-!p4@TFAP2A!1.48!33.52!TFAP2A;;chr17:46703687..46703740,-!p1@HOXB9!1.44!26.34!HOXB9;;chr11:31832658..31832681,-!p1@PAX6!1.33!20.35!PAX6;;chr17:46688334..46688385,-!p1@HOXB7!1.29!26.34!HOXB7;;chr21:38071430..38071456,+!p1@SIM2!1.22!15.56!SIM2;;chr6:10415276..10415341,-!p2@TFAP2A!1.20!17.96!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!1.15!13.17!HOXB6;;chr17:46806067..46806097,-!p1@HOXB13!1.15!13.17!HOXB13;;chr12:66218836..66218888,+!p1@HMGA2!1.13!117.34!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!1.12!16.76!HOXB7;;chr15:67418119..67418162,+!p5@SMAD3!1.11!13.17!SMAD3;;chr11:31832610..31832639,-!p5@PAX6!1.11!11.97!PAX6;;chr17:56065729..56065781,-!p2@VEZF1!1.10!50.29!VEZF1;;chr15:83953397..83953425,-!p1@BNC1!1.10!13.17!BNC1;;chr12:66218598..66218645,+!p2@HMGA2!1.06!49.09!HMGA2;;chr3:169381420..169381535,-!p1@MECOM!1.05!11.97!MECOM;;chr12:66218003..66218018,+!p9@HMGA2!1.03!11.97!HMGA2;;chr15:67418177..67418204,+!p9@SMAD3!1.02!9.58!SMAD3;;chr17:46703528..46703549,-!p5@HOXB9!1.02!9.58!HOXB9;;chr11:46299199..46299233,+!p1@CREB3L1!1.00!47.89!CREB3L1;;chr17:46655730..46655791,-!p1@HOXB4!1.00!22.75!HOXB4;;chr20:2673383..2673441,+!p1@EBF4!1.00!14.37!EBF4;;chr17:35294075..35294102,+!p1@ENST00000559335!0.97!8.38!LHX1;;chr10:28034739..28034756,-!p1@MKX!0.97!8.38!MKX;;chr2:42721205..42721307,+!p4@MTA3!0.97!8.38!MTA3;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.38!TFAP2A;;chr8:23564065..23564087,-!p1@NKX2-6!0.97!8.38!NKX2-6;;chr1:25256756..25256774,-!p1@RUNX3!0.96!15.56!RUNX3;;chr5:150284532..150284549,-!p1@ZNF300!0.95!16.76!ZNF300;;chr12:80084737..80084763,-!p3@PAWR!0.94!29.93!PAWR;;chr5:176738887..176738934,-!p1@MXD3!0.93!52.68!MXD3;;chr9:114287433..114287513,+!p1@ZNF483!0.91!19.16!ZNF483;;chr17:41622731..41622764,-!p5@ETV4!0.91!7.18!ETV4;;chr17:46675558..46675577,-!p2@HOXB6!0.91!7.18!HOXB6;;chr4:109089095..109089144,-!p6@LEF1!0.91!7.18!LEF1;;chr11:46299539..46299620,+!p2@CREB3L1!0.90!11.97!CREB3L1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.90!10.78!ZNF853;;chr15:67418047..67418093,+!p4@SMAD3!0.88!8.38!SMAD3;;chr12:124873852..124873881,-!p3@NCOR2!0.86!39.51!NCOR2;;chr15:96869114..96869160,+!p11@NR2F2!0.85!8.38!NR2F2;;chr12:77459306..77459365,-!p1@E2F7!0.84!79.02!E2F7;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.84!5.99!HOXC5;;chr14:69260437..69260442,-!p10@ZFP36L1!0.84!5.99!ZFP36L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.84!5.99!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.99!TBX20;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.99!ZFY;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.99!KDM5D;;chr12:80085061..80085119,-!p6@PAWR!0.83!9.58!PAWR;;chr6:85473156..85473210,-!p2@TBX18!0.83!7.18!TBX18;;chr12:27485785..27485816,+!p1@ARNTL2!0.82!41.91!ARNTL2;;chr17:41277372..41277418,-!p1@BRCA1!0.82!21.55!BRCA1;;chr20:42543506..42543549,+!p2@TOX2!0.82!14.37!TOX2;;chr12:80085255..80085284,-!p9@PAWR!0.82!8.38!PAWR;;chr12:27485823..27485868,+!p2@ARNTL2!0.81!23.95!ARNTL2;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.75!FOSL1;;chr6:34204921..34204939,+!p3@HMGA1!0.80!173.61!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!0.80!7.18!PRRX2;;chr18:19749517..19749531,+!p3@GATA6!0.79!9.58!GATA6;;chr8:72756667..72756736,-!p2@MSC!0.79!8.38!MSC;;chr17:46675420..46675465,-!p3@HOXB6!0.79!5.99!HOXB6;;chr7:74072135..74072171,+!p2@GTF2I!0.78!16.76!GTF2I;;chr12:66218255..66218304,+!p3@HMGA2!0.78!14.37!HMGA2;;chr17:41623259..41623278,-!p7@ETV4!0.78!5.99!ETV4;;chr19:35759824..35759891,+!p1@USF2!0.77!167.62!USF2;;chr9:127533519..127533573,-!p2@NR6A1!0.77!5.99!NR6A1;;chr5:137804405..137804444,+!p3@EGR1!0.77!5.99!EGR1;;chr12:54447599..54447630,+!p3@HOXC4!0.76!5.99!HOXC4;;chr11:31832862..31832884,-!p2@PAX6!0.76!4.79!PAX6;;chr14:29235961..29236008,+!p1@FOXG1!0.76!4.79!FOXG1;;chr17:41277334..41277348,-!p6@BRCA1!0.76!4.79!BRCA1;;chr17:46687935..46687950,-!p3@HOXB7!0.76!4.79!HOXB7;;chr17:48072574..48072597,-!p1@DLX3!0.76!4.79!DLX3;;chr19:47523058..47523114,+!p1@NPAS1!0.76!4.79!NPAS1;;chr21:38071403..38071428,+!p2@SIM2!0.76!4.79!SIM2;;chr2:172949484..172949522,+!p1@DLX1!0.76!4.79!DLX1;;chr6:10412477..10412490,-!p10@TFAP2A!0.76!4.79!TFAP2A;;chr7:1577899..1577943,+!p3@MAFK!0.76!4.79!MAFK;;chr9:16705069..16705086,-!p3@BNC2!0.76!4.79!BNC2;;chr8:67525443..67525459,-!p2@MYBL1!0.75!7.18!MYBL1;;chr5:321810..321877,+!p1@AHRR!0.74!15.56!AHRR;;chr20:50179368..50179392,-!p2@NFATC2!0.74!5.99!NFATC2;;chr6:45389791..45389832,+!p3@RUNX2!0.73!11.97!RUNX2;;chr15:96874012..96874042,+!p2@NR2F2!0.72!43.10!NR2F2;;chr21:27107259..27107299,+!p1@GABPA!0.72!27.54!GABPA;;chr9:130954041..130954121,-!p2@CIZ1!0.72!20.35!CIZ1;;chr19:37019569..37019593,-!p2@ZNF260!0.72!7.18!ZNF260;;chr19:38146320..38146401,-!p1@ZFP30!0.71!25.14!ZFP30;;chrX:70503037..70503095,+!p3@NONO!0.71!7.18!NONO;;chr12:2986275..2986363,-!p1@FOXM1!0.70!45.50!FOXM1;;chr8:77593474..77593612,+!p1@ZFHX4!0.70!19.16!ZFHX4;;chr13:45011349..45011391,-!p4@TSC22D1!0.70!10.78!TSC22D1;;chr12:66218183..66218209,+!p4@HMGA2!0.70!8.38!HMGA2;;chr19:42788636..42788660,+!p1@CIC!0.70!7.18!CIC;;chr19:37329254..37329295,-!p1@ZNF790!0.69!10.78!ZNF790;;chr15:37390850..37390909,-!p3@MEIS2!0.69!8.38!MEIS2;;chr1:53019059..53019176,-!p2@ZCCHC11!0.68!38.31!ZCCHC11;;chr4:1873011..1873063,+!p2@WHSC1!0.68!14.37!WHSC1;;chr8:67525473..67525518,-!p1@MYBL1!0.68!9.58!MYBL1;;chr12:66218573..66218596,+!p7@HMGA2!0.68!5.99!HMGA2;;chr19:37096194..37096235,+!p1@ZNF382!0.67!13.17!ZNF382;;chr8:106330656..106330684,+!p1@ZFPM2!0.67!10.78!ZFPM2;;chr3:141087144..141087170,+!p11@ZBTB38!0.67!4.79!ZBTB38;;chr19:38720294..38720348,-!p1@DPF1!0.67!4.79!DPF1;;chr17:46125707..46125746,+!p2@NFE2L1!0.66!221.50!NFE2L1;;chr14:68283291..68283323,-!p1@ZFYVE26!0.66!68.25!ZFYVE26;;chr6:20402102..20402152,+!p1@E2F3!0.66!16.76!E2F3;;chr2:200323414..200323455,-!p1@SATB2!0.66!8.38!SATB2;;chr20:50721803..50721857,-!p2@ZFP64!0.66!5.99!ZFP64;;chr1:44513995..44514031,+!p1@KLF17!0.66!3.59!KLF17;;chr20:42602000..42602034,+!p5@TOX2!0.66!3.59!TOX2;;chr21:38071462..38071474,+!p3@SIM2!0.66!3.59!SIM2;;chr2:45169193..45169219,+!p3@SIX3!0.66!3.59!SIX3;;chr2:95963052..95963106,+!p1@KCNIP3!0.66!3.59!KCNIP3;;chr10:28034772..28034783,-!p4@MKX!0.66!3.59!MKX;;chr11:31832807..31832823,-!p4@PAX6!0.66!3.59!PAX6;;chr12:115122303..115122314,-!p6@TBX3!0.66!3.59!TBX3;;chr12:124873824..124873833,-!p19@NCOR2!0.66!3.59!NCOR2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.66!3.59!HOXC5;;chr12:66218904..66218913,+!p11@HMGA2!0.66!3.59!HMGA2;;chr12:69753583..69753598,+!p2@YEATS4!0.66!3.59!YEATS4;;chr9:126774018..126774055,+!p1@LHX2!0.66!3.59!LHX2;;chr6:10415263..10415274,-!p8@TFAP2A!0.66!3.59!TFAP2A;;chr6:41701557..41701578,-!p3@TFEB!0.66!3.59!TFEB;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.59!HOXA7;;chr8:77593448..77593471,+!p2@ZFHX4!0.66!3.59!ZFHX4;;chr15:67418099..67418118,+!p16@SMAD3!0.66!3.59!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.66!3.59!NR2F2;;chr17:46675586..46675600,-!p6@HOXB6!0.66!3.59!HOXB6;;chr17:46703942..46703964,-!p4@HOXB9!0.66!3.59!HOXB9;;chr17:46806419..46806438,-!p4@HOXB13!0.66!3.59!HOXB13;;chr19:40562072..40562143,-!p1@ZNF780B!0.65!37.12!ZNF780B;;chr11:76092097..76092183,-!p1@PRKRIR!0.65!32.33!PRKRIR;;chr7:64838786..64838809,+!p2@ZNF92!0.65!22.75!ZNF92;;chr7:99070527..99070542,+!p2@ZNF789!0.65!8.38!ZNF789;;chr6:31869828..31869880,-!p1@ZBTB12!0.65!7.18!ZBTB12;;chr15:80696703..80696754,+!p1@ARNT2!0.65!4.79!ARNT2;;chr19:18391615..18391637,-!p5@JUND!0.65!4.79!JUND;;chr19:36909528..36909581,-!p1@ZFP82!0.64!17.96!ZFP82;;chr3:185826764..185826803,-!p2@ETV5!0.64!14.37!ETV5;;chr1:151032922..151032951,+!p2@MLLT11!0.64!5.99!MLLT11;;chr5:72744445..72744466,-!p2@FOXD1!0.64!5.99!FOXD1;;chr6:21597600..21597664,+!p3@SOX4!0.64!5.99!SOX4;;chr12:80084279..80084293,-!p8@PAWR!0.64!5.99!PAWR;;chr9:4299979..4299996,-!p3@GLIS3!0.64!5.99!GLIS3;;chr14:55493763..55493824,-!p1@WDHD1!0.63!28.74!WDHD1;;chr12:3068544..3068597,+!p1@TEAD4!0.63!22.75!TEAD4;;chr3:114343768..114343822,-!p1@ZBTB20!0.63!16.76!ZBTB20;;chr19:38085633..38085706,-!p1@ZNF571!0.63!9.58!ZNF571;;chr8:23540441..23540466,-!p1@NKX3-1!0.63!7.18!NKX3-1;;chr3:157823517..157823562,-!p1@SHOX2!0.63!3.59!SHOX2;;chr19:1592714..1592762,-!p1@MBD3!0.62!28.74!MBD3;;chr12:80084167..80084197,-!p5@PAWR!0.62!8.38!PAWR;;chr12:125002827..125002855,-!p5@NCOR2!0.62!4.79!NCOR2;;chr15:96876340..96876348,+!p22@NR2F2!0.62!3.59!NR2F2;;chr1:67395922..67395976,+!p2@MIER1!0.61!35.92!MIER1;;chr17:41623692..41623715,-!p1@ETV4!0.61!15.56!ETV4;;chr15:96874244..96874259,+!p5@NR2F2!0.61!8.38!NR2F2;;chr19:37407172..37407217,-!p2@ZNF829!0.61!5.99!ZNF829;;chr6:85474299..85474324,-!p1@TBX18!0.61!5.99!TBX18;;chr18:53068911..53068935,-!p4@TCF4!0.61!3.59!TCF4;;chr19:40503013..40503044,+!p3@ZNF546!0.61!3.59!ZNF546;;chr19:10305581..10305646,-!p1@DNMT1!0.60!125.72!DNMT1;;chr17:45973586..45973618,+!p1@SP2!0.60!56.27!SP2;;chr5:43120995..43121052,+!p1@ZNF131!0.60!17.96!ZNF131;;chrX:84499081..84499115,+!p2@ZNF711!0.60!4.79!ZNF711;;chr10:8095593..8095625,+!p3@GATA3!0.60!3.59!GATA3;;chr7:99679311..99679322,-!p3@ZNF3!0.60!3.59!ZNF3;;chr3:37217544..37217586,-!p6@LRRFIP2!0.60!3.59!LRRFIP2;;chr13:114238997..114239077,+!p1@TFDP1!0.59!180.79!TFDP1;;chr17:70117153..70117174,+!p1@SOX9!0.59!35.92!SOX9;;chr7:19157043..19157088,-!p2@TWIST1!0.59!8.38!TWIST1;;chr20:32274150..32274166,-!p2@E2F1!0.59!5.99!E2F1;;chr17:46620898..46620927,-!p9@HOXB2!0.59!3.59!HOXB2;;chr20:42295745..42295765,+!p1@MYBL2!0.58!56.27!MYBL2;;chrX:128657413..128657456,-!p2@SMARCA1!0.58!29.93!SMARCA1;;chr20:32274179..32274213,-!p1@E2F1!0.58!22.75!E2F1;;chr19:37157713..37157760,-!p1@ZNF461!0.58!19.16!ZNF461;;chr21:36421535..36421610,-!p2@RUNX1!0.58!11.97!RUNX1;;chr9:37465273..37465338,-!p2@ZBTB5!0.58!8.38!ZBTB5;;chr11:120107344..120107351,+!p1@POU2F3!0.58!3.59!POU2F3;;chr15:37392576..37392589,-!p12@MEIS2!0.58!3.59!MEIS2;;chr17:41622834..41622883,-!p6@ETV4!0.58!3.59!ETV4;;chr6:34205372..34205412,+!p5@HMGA1!0.57!16.76!HMGA1;;chr20:39946361..39946379,-!p2@ZHX3!0.57!9.58!ZHX3;;chr22:22863052..2286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@@ Line 36: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10647-109A8
 |is_a=CL:0002224;;EFO:0002091;;FF:0000210;;FF:0103071
 |is_obsolete=
+|library_id=CNhs11750
+|library_id_phase_based=2:CNhs11750
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10647
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10647
 |name=lens epithelial cell line:SRA 01/04
 |namespace=FANTOM5
@@ Line 44: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11750,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=109
 |rna_catalog_number=
@@ Line 59: / Line 77: @@
 |rna_weight_ug=21.17162
 |sample_age=3 months
+|sample_category=cell lines
 |sample_cell_catalog=RCB1591
 |sample_cell_line=SRA 01/04
@@ Line 80: / Line 99: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10647-109A8;search_select_hide=table117:FF:10647-109A8
 }}

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FF:10647-109A8: Difference between revisions

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Latest revision as of 14:32, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0