FF:11364-117I5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005745 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005745 | ||
|accession_numbers=CAGE;DRX008492;DRR009364;DRZ000789;DRZ002174;DRZ012139;DRZ013524 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037224;DRR041590;DRZ007232 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0002456,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595,CL:0002593 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000173 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.92!83.11!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.82!65.80!SIM2;;chr11:64764435..64764449,-!p1@BATF2!1.73!72.14!BATF2;;chr10:94449703..94449718,+!p1@HHEX!1.68!172.31!HHEX;;chr6:126240380..126240430,+!p2@NCOA7!1.60!98.22!NCOA7;;chr11:34642612..34642646,+!p1@EHF!1.59!37.53!EHF;;chr7:27183263..27183284,-!p2@HOXA5!1.47!28.51!HOXA5;;chr11:65686802..65686818,+!p6@DRAP1!1.46!48.01!DRAP1;;chr20:6748325..6748352,+!p1@BMP2!1.44!38.02!BMP2;;chr7:27183291..27183324,-!p1@HOXA5!1.43!25.83!HOXA5;;chr11:615570..615721,-!p2@IRF7!1.33!39.48!IRF7;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.47!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.27!67.51!FOSL1;;chr21:38071403..38071428,+!p2@SIM2!1.26!17.06!SIM2;;chr6:126240356..126240379,+!p7@NCOA7!1.24!20.23!NCOA7;;chr9:132427972..132428056,+!p1@PRRX2!1.23!20.72!PRRX2;;chr7:27170359..27170381,-!p1@HOXA4!1.23!15.84!HOXA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.21!77.74!CREB3L1;;chr2:102091144..102091183,-!p2@RFX8!1.21!15.11!RFX8;;chr11:65686732..65686756,+!p2@DRAP1!1.20!62.39!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.20!18.28!FOXF1;;chr15:67458491..67458505,+!p18@SMAD3!1.19!14.62!SMAD3;;chr9:132427883..132427951,+!p2@PRRX2!1.19!14.38!PRRX2;;chr17:1959369..1959388,+!p2@HIC1!1.18!37.29!HIC1;;chr18:19749386..19749404,+!p2@GATA6!1.18!19.98!GATA6;;chr10:94449675..94449694,+!p2@HHEX!1.17!37.29!HHEX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.17!13.65!HOXC5;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.91!CREB3L1;;chr19:42636586..42636607,-!p1@POU2F2!1.15!36.31!POU2F2;;chr2:231084639..231084654,-!p2@SP110!1.14!21.45!SP110;;chr3:25470156..25470227,+!p2@RARB!1.14!12.92!RARB;;chr11:65687222..65687240,+!p7@DRAP1!1.13!15.84!DRAP1;;chr12:54402745..54402788,+!p1@HOXC8!1.13!12.43!HOXC8;;chr18:19749541..19749557,+!p1@GATA6!1.12!38.26!GATA6;;chr15:83953397..83953425,-!p1@BNC1!1.12!14.14!BNC1;;chr6:36355513..36355578,-!p2@ETV7!1.11!15.11!ETV7;;chr11:615942..615957,-!p1@IRF7!1.10!108.94!IRF7;;chr1:170632115..170632136,+!p9@PRRX1!1.10!11.45!PRRX1;;chr7:26191809..26191890,+!p1@NFE2L3!1.08!55.57!NFE2L3;;chr2:191878812..191878823,-!p2@STAT1!1.07!13.89!STAT1;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.72!HOXC9;;chr1:158979872..158979898,+!p3@IFI16!1.06!32.66!IFI16;;chr17:46622070..46622109,-!p1@HOXB2!1.04!22.67!HOXB2;;chr11:65687362..65687436,+!p3@DRAP1!1.03!44.60!DRAP1;;chr7:27183114..27183138,-!p3@HOXA5!1.03!9.75!HOXA5;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.62!HMGA2;;chr19:13134772..13134822,+!p2@NFIX!1.01!13.89!NFIX;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.67!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!1.00!9.02!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.99!12.67!HOXB7;;chr6:126240442..126240459,+!p4@NCOA7!0.99!11.21!NCOA7;;chr8:106330656..106330684,+!p1@ZFPM2!0.98!22.67!ZFPM2;;chr5:2751762..2751784,-!p1@IRX2!0.98!8.53!IRX2;;chr6:34204921..34204939,+!p3@HMGA1!0.97!257.36!HMGA1;;chr11:65687243..65687276,+!p8@DRAP1!0.97!11.45!DRAP1;;chr7:44143925..44143970,+!p1@AEBP1!0.96!186.93!AEBP1;;chr12:54447599..54447630,+!p3@HOXC4!0.96!9.99!HOXC4;;chr12:54447637..54447659,+!p4@HOXC4!0.96!8.04!HOXC4;;chr7:44143978..44143989,+!p2@AEBP1!0.95!14.87!AEBP1;;chr16:86600426..86600441,+!p1@FOXC2!0.94!19.50!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!0.94!8.77!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.94!7.80!ZFY;;chr1:158979792..158979814,+!p2@IFI16!0.93!74.58!IFI16;;chr8:25902876..25902936,-!p1@EBF2!0.93!7.56!EBF2;;chr8:72756667..72756736,-!p2@MSC!0.92!11.70!MSC;;chr1:170632137..170632172,+!p10@PRRX1!0.92!7.31!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!0.92!7.31!RFX8;;chr1:37940170..37940190,+!p1@ZC3H12A!0.91!91.39!ZC3H12A;;chr12:66218836..66218888,+!p1@HMGA2!0.91!69.46!HMGA2;;chr11:65687158..65687216,+!p4@DRAP1!0.91!42.89!DRAP1;;chr17:46622114..46622138,-!p4@HOXB2!0.91!11.21!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.91!7.07!HOXB6;;chr22:19748231..19748317,+!p1@TBX1!0.91!7.07!TBX1;;chr2:191878874..191878938,-!p1@STAT1!0.90!388.72!STAT1;;chr17:46621937..46621966,-!p2@HOXB2!0.89!19.25!HOXB2;;chr2:231280954..231280965,+!p2@SP100!0.89!12.92!SP100;;chr11:34642656..34642667,+!p2@EHF!0.89!6.82!EHF;;chr9:16705069..16705086,-!p3@BNC2!0.89!6.82!BNC2;;chr3:141121847..141121868,+!p5@ZBTB38!0.88!10.24!ZBTB38;;chr12:54394309..54394336,+!p2@HOXC9!0.88!6.58!HOXC9;;chr11:65667846..65667868,-!p1@FOSL1!0.87!178.89!FOSL1;;chr14:62162258..62162269,+!p2@HIF1A!0.87!65.80!HIF1A;;chr11:64764402..64764413,-!p2@BATF2!0.87!6.34!BATF2;;chr21:38071462..38071474,+!p3@SIM2!0.87!6.34!SIM2;;chr12:27485762..27485776,+!p3@ARNTL2!0.86!17.55!ARNTL2;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.33!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!0.86!10.97!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.06!HMGA2;;chr10:35484053..35484076,+!p1@CREM!0.85!15.84!CREM;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.56!TBX18;;chr7:27183191..27183214,-!p4@HOXA5!0.85!6.09!HOXA5;;chr3:25470062..25470084,+!p4@RARB!0.85!6.09!RARB;;chr14:62162285..62162296,+!p3@HIF1A!0.84!32.66!HIF1A;;chr6:36355431..36355466,-!p1@ETV7!0.84!5.85!ETV7;;chr4:174450089..174450153,-!p2@HAND2!0.84!5.85!HAND2;;chr9:35732647..35732678,+!p2@CREB3!0.83!34.12!CREB3;;chr12:53614115..53614154,-!p1@RARG!0.83!32.90!RARG;;chr17:1958388..1958404,+!p1@HIC1!0.82!38.02!HIC1;;chr2:239756671..239756732,+!p1@TWIST2!0.82!19.25!TWIST2;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.61!KDM5D;;chr10:22292591..22292606,-!p2@DNAJC1!0.81!9.26!DNAJC1;;chr22:38598057..38598071,+!p3@MAFF!0.80!13.16!MAFF;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.56!HOXB7;;chr15:67458861..67458879,+!p17@SMAD3!0.80!5.36!SMAD3;;chr3:168864315..168864339,-!p2@MECOM!0.79!8.77!MECOM;;chr7:27192185..27192209,-!p1@HOXA3!0.79!5.12!HOXA3;;chr2:19558373..19558392,-!p1@OSR1!0.78!14.87!OSR1;;chr11:65686776..65686787,+!p9@DRAP1!0.77!5.85!DRAP1;;chr1:170632723..170632739,+!p8@PRRX1!0.77!4.87!PRRX1;;chr12:56753869..56753930,-!p1@STAT2!0.76!230.07!STAT2;;chr3:141087393..141087426,+!p3@ZBTB38!0.76!20.47!ZBTB38;;chr8:72756267..72756296,-!p4@MSC!0.76!7.31!MSC;;chr2:66662895..66662907,+!p3@MEIS1!0.76!6.09!MEIS1;;chr7:139762641..139762768,-!p1@PARP12!0.75!69.95!PARP12;;chr22:38598086..38598105,+!p1@MAFF!0.75!54.35!MAFF;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.63!SIX2;;chr19:46801639..46801699,+!p1@HIF3A!0.75!4.63!HIF3A;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.63!HOXA7;;chr18:19749517..19749531,+!p3@GATA6!0.74!8.53!GATA6;;chr15:57511609..57511651,+!p2@TCF12!0.74!8.04!TCF12;;chr14:24630902..24630948,+!p2@IRF9!0.74!5.61!IRF9;;chr17:46622205..46622218,-!p3@HOXB2!0.74!5.36!HOXB2;;chr2:231084659..231084721,-!p1@SP110!0.73!113.81!SP110;;chr17:38256822..38256851,-!p1@NR1D1!0.73!38.26!NR1D1;;chr14:61116183..61116208,-!p1@SIX1!0.73!18.28!SIX1;;chr8:72756637..72756664,-!p3@MSC!0.73!5.12!MSC;;chr6:36355486..36355497,-!p3@ETV7!0.73!4.39!ETV7;;chr2:145275162..145275202,-!p2@ZEB2!0.72!28.03!ZEB2;;chr11:65430554..65430579,-!p3@RELA!0.72!11.94!RELA;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.07!ZFP64;;chr8:106330696..106330719,+!p2@ZFPM2!0.72!5.61!ZFPM2;;chr9:4300050..4300118,-!p1@GLIS3!0.71!29.98!GLIS3;;chr4:81118647..81118666,+!p1@PRDM8!0.71!5.61!PRDM8;;chr1:170632959..170632987,+!p4@PRRX1!0.71!4.63!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.14!CREB3L1;;chr12:66218923..66218934,+!p14@HMGA2!0.71!4.14!HMGA2;;chr5:131826457..131826514,-!p1@IRF1!0.70!178.40!IRF1;;chr12:124873357..124873401,-!p1@NCOR2!0.70!52.89!NCOR2;;chr17:59477233..59477263,+!p1@TBX2!0.70!13.89!TBX2;;chr1:158979851..158979865,+!p5@IFI16!0.70!9.75!IFI16;;chr6:106534192..106534224,+!p1@PRDM1!0.69!12.19!PRDM1;;chr2:28618532..28618610,+!p4@FOSL2!0.69!7.07!FOSL2;;chr2:46612334..46612349,+!p6@EPAS1!0.69!5.36!EPAS1;;chr7:44143997..44144008,+!p3@AEBP1!0.69!5.12!AEBP1;;chr7:1577899..1577943,+!p3@MAFK!0.69!3.90!MAFK;;chr7:27169801..27169844,-!p2@HOXA4!0.69!3.90!HOXA4;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.90!HOXA9;;chr1:170632051..170632081,+!p16@PRRX1!0.69!3.90!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.69!3.90!PRRX1;;chr1:201979703..201979721,+!p2@ELF3!0.69!3.90!ELF3;;chr20:47894569..47894799,-!p1@ZNFX1!0.68!116.74!ZNFX1;;chr19:52074502..52074587,+!p1@ZNF175!0.68!15.60!ZNF175;;chr15:37390850..37390909,-!p3@MEIS2!0.67!7.80!MEIS2;;chr2:200322654..200322707,-!p2@SATB2!0.67!5.61!SATB2;;chr2:66662510..66662521,+!p6@MEIS1!0.67!3.66!MEIS1;;chr11:65429891..65429915,-!p7@RELA!0.67!3.66!RELA;;chr11:65668011..65668020,-!p3@FOSL1!0.67!3.66!FOSL1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.67!3.66!HOXC5;;chr8:71157595..71157616,-!p13@NCOA2!0.67!3.66!NCOA2;;chr8:77593750..77593757,+!p3@ZFHX4!0.67!3.66!ZFHX4;;chr2:66662281..66662308,+!p1@MEIS1!0.66!14.14!MEIS1;;chr7:19157248..19157268,-!p1@TWIST1!0.66!11.21!TWIST1;;chr10:104155659..104155676,+!p4@NFKB2!0.66!4.63!NFKB2;;chr1:151032860..151032918,+!p1@MLLT11!0.65!48.74!MLLT11;;chr19:13136130..13136165,+!p6@NFIX!0.65!4.87!NFIX;;chr2:231077626..231077651,-!p6@SP110!0.65!4.63!SP110;;chr9:14083467..14083483,-!p4@NFIB!0.64!9.26!NFIB;;chr17:46622440..46622477,-!p5@HOXB2!0.64!3.90!HOXB2;;chr18:53068911..53068935,-!p4@TCF4!0.64!3.90!TCF4;;chr17:46659728..46659749,-!p3@HOXB3!0.64!3.41!HOXB3;;chr7:27183325..27183338,-!p5@HOXA5!0.64!3.41!HOXA5;;chr19:9609272..9609297,-!p1@ZNF560!0.64!3.41!ZNF560;;chr1:170632439..170632465,+!p11@PRRX1!0.64!3.41!PRRX1;;chr2:113994526..113994556,-!p3@PAX8!0.64!3.41!PAX8;;chr10:131762504..131762555,-!p1@EBF3!0.64!3.41!EBF3;;chr12:54402790..54402805,+!p2@HOXC8!0.64!3.41!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!0.64!3.41!HOXC6;;chr19:50169013..50169062,-!p2@IRF3!0.63!22.18!IRF3;;chr1:935467..935484,-!p1@HES4!0.63!16.57!HES4;;chr2:231084820..231084836,-!p5@SP110!0.63!3.90!SP110;;chr5:139492456..139492489,+!p7@PURA!0.62!3.17!PURA;;chr7:27153428..27153440,-!p3@HOXA3!0.62!3.17!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.62!3.17!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!0.62!3.17!HOXA11;;chr15:67458836..67458859,+!p22@SMAD3!0.62!3.17!SMAD3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.62!3.17!SEBOX;;chr1:170632028..170632043,+!p20@PRRX1!0.62!3.17!PRRX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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.92!83.11!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.82!65.80!SIM2;;chr11:64764435..64764449,-!p1@BATF2!1.73!72.14!BATF2;;chr10:94449703..94449718,+!p1@HHEX!1.68!172.31!HHEX;;chr6:126240380..126240430,+!p2@NCOA7!1.60!98.22!NCOA7;;chr11:34642612..34642646,+!p1@EHF!1.59!37.53!EHF;;chr7:27183263..27183284,-!p2@HOXA5!1.47!28.51!HOXA5;;chr11:65686802..65686818,+!p6@DRAP1!1.46!48.01!DRAP1;;chr20:6748325..6748352,+!p1@BMP2!1.44!38.02!BMP2;;chr7:27183291..27183324,-!p1@HOXA5!1.43!25.83!HOXA5;;chr11:615570..615721,-!p2@IRF7!1.33!39.48!IRF7;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.47!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.27!67.51!FOSL1;;chr21:38071403..38071428,+!p2@SIM2!1.26!17.06!SIM2;;chr6:126240356..126240379,+!p7@NCOA7!1.24!20.23!NCOA7;;chr9:132427972..132428056,+!p1@PRRX2!1.23!20.72!PRRX2;;chr7:27170359..27170381,-!p1@HOXA4!1.23!15.84!HOXA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.21!77.74!CREB3L1;;chr2:102091144..102091183,-!p2@RFX8!1.21!15.11!RFX8;;chr11:65686732..65686756,+!p2@DRAP1!1.20!62.39!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.20!18.28!FOXF1;;chr15:67458491..67458505,+!p18@SMAD3!1.19!14.62!SMAD3;;chr9:132427883..132427951,+!p2@PRRX2!1.19!14.38!PRRX2;;chr17:1959369..1959388,+!p2@HIC1!1.18!37.29!HIC1;;chr18:19749386..19749404,+!p2@GATA6!1.18!19.98!GATA6;;chr10:94449675..94449694,+!p2@HHEX!1.17!37.29!HHEX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.17!13.65!HOXC5;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.91!CREB3L1;;chr19:42636586..42636607,-!p1@POU2F2!1.15!36.31!POU2F2;;chr2:231084639..231084654,-!p2@SP110!1.14!21.45!SP110;;chr3:25470156..25470227,+!p2@RARB!1.14!12.92!RARB;;chr11:65687222..65687240,+!p7@DRAP1!1.13!15.84!DRAP1;;chr12:54402745..54402788,+!p1@HOXC8!1.13!12.43!HOXC8;;chr18:19749541..19749557,+!p1@GATA6!1.12!38.26!GATA6;;chr15:83953397..83953425,-!p1@BNC1!1.12!14.14!BNC1;;chr6:36355513..36355578,-!p2@ETV7!1.11!15.11!ETV7;;chr11:615942..615957,-!p1@IRF7!1.10!108.94!IRF7;;chr1:170632115..170632136,+!p9@PRRX1!1.10!11.45!PRRX1;;chr7:26191809..26191890,+!p1@NFE2L3!1.08!55.57!NFE2L3;;chr2:191878812..191878823,-!p2@STAT1!1.07!13.89!STAT1;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.72!HOXC9;;chr1:158979872..158979898,+!p3@IFI16!1.06!32.66!IFI16;;chr17:46622070..46622109,-!p1@HOXB2!1.04!22.67!HOXB2;;chr11:65687362..65687436,+!p3@DRAP1!1.03!44.60!DRAP1;;chr7:27183114..27183138,-!p3@HOXA5!1.03!9.75!HOXA5;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.62!HMGA2;;chr19:13134772..13134822,+!p2@NFIX!1.01!13.89!NFIX;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.67!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!1.00!9.02!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.99!12.67!HOXB7;;chr6:126240442..126240459,+!p4@NCOA7!0.99!11.21!NCOA7;;chr8:106330656..106330684,+!p1@ZFPM2!0.98!22.67!ZFPM2;;chr5:2751762..2751784,-!p1@IRX2!0.98!8.53!IRX2;;chr6:34204921..34204939,+!p3@HMGA1!0.97!257.36!HMGA1;;chr11:65687243..65687276,+!p8@DRAP1!0.97!11.45!DRAP1;;chr7:44143925..44143970,+!p1@AEBP1!0.96!186.93!AEBP1;;chr12:54447599..54447630,+!p3@HOXC4!0.96!9.99!HOXC4;;chr12:54447637..54447659,+!p4@HOXC4!0.96!8.04!HOXC4;;chr7:44143978..44143989,+!p2@AEBP1!0.95!14.87!AEBP1;;chr16:86600426..86600441,+!p1@FOXC2!0.94!19.50!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!0.94!8.77!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.94!7.80!ZFY;;chr1:158979792..158979814,+!p2@IFI16!0.93!74.58!IFI16;;chr8:25902876..25902936,-!p1@EBF2!0.93!7.56!EBF2;;chr8:72756667..72756736,-!p2@MSC!0.92!11.70!MSC;;chr1:170632137..170632172,+!p10@PRRX1!0.92!7.31!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!0.92!7.31!RFX8;;chr1:37940170..37940190,+!p1@ZC3H12A!0.91!91.39!ZC3H12A;;chr12:66218836..66218888,+!p1@HMGA2!0.91!69.46!HMGA2;;chr11:65687158..65687216,+!p4@DRAP1!0.91!42.89!DRAP1;;chr17:46622114..46622138,-!p4@HOXB2!0.91!11.21!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.91!7.07!HOXB6;;chr22:19748231..19748317,+!p1@TBX1!0.91!7.07!TBX1;;chr2:191878874..191878938,-!p1@STAT1!0.90!388.72!STAT1;;chr17:46621937..46621966,-!p2@HOXB2!0.89!19.25!HOXB2;;chr2:231280954..231280965,+!p2@SP100!0.89!12.92!SP100;;chr11:34642656..34642667,+!p2@EHF!0.89!6.82!EHF;;chr9:16705069..16705086,-!p3@BNC2!0.89!6.82!BNC2;;chr3:141121847..141121868,+!p5@ZBTB38!0.88!10.24!ZBTB38;;chr12:54394309..54394336,+!p2@HOXC9!0.88!6.58!HOXC9;;chr11:65667846..65667868,-!p1@FOSL1!0.87!178.89!FOSL1;;chr14:62162258..62162269,+!p2@HIF1A!0.87!65.80!HIF1A;;chr11:64764402..64764413,-!p2@BATF2!0.87!6.34!BATF2;;chr21:38071462..38071474,+!p3@SIM2!0.87!6.34!SIM2;;chr12:27485762..27485776,+!p3@ARNTL2!0.86!17.55!ARNTL2;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.33!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!0.86!10.97!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.06!HMGA2;;chr10:35484053..35484076,+!p1@CREM!0.85!15.84!CREM;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.56!TBX18;;chr7:27183191..27183214,-!p4@HOXA5!0.85!6.09!HOXA5;;chr3:25470062..25470084,+!p4@RARB!0.85!6.09!RARB;;chr14:62162285..62162296,+!p3@HIF1A!0.84!32.66!HIF1A;;chr6:36355431..36355466,-!p1@ETV7!0.84!5.85!ETV7;;chr4:174450089..174450153,-!p2@HAND2!0.84!5.85!HAND2;;chr9:35732647..35732678,+!p2@CREB3!0.83!34.12!CREB3;;chr12:53614115..53614154,-!p1@RARG!0.83!32.90!RARG;;chr17:1958388..1958404,+!p1@HIC1!0.82!38.02!HIC1;;chr2:239756671..239756732,+!p1@TWIST2!0.82!19.25!TWIST2;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.61!KDM5D;;chr10:22292591..22292606,-!p2@DNAJC1!0.81!9.26!DNAJC1;;chr22:38598057..38598071,+!p3@MAFF!0.80!13.16!MAFF;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.56!HOXB7;;chr15:67458861..67458879,+!p17@SMAD3!0.80!5.36!SMAD3;;chr3:168864315..168864339,-!p2@MECOM!0.79!8.77!MECOM;;chr7:27192185..27192209,-!p1@HOXA3!0.79!5.12!HOXA3;;chr2:19558373..19558392,-!p1@OSR1!0.78!14.87!OSR1;;chr11:65686776..65686787,+!p9@DRAP1!0.77!5.85!DRAP1;;chr1:170632723..170632739,+!p8@PRRX1!0.77!4.87!PRRX1;;chr12:56753869..56753930,-!p1@STAT2!0.76!230.07!STAT2;;chr3:141087393..141087426,+!p3@ZBTB38!0.76!20.47!ZBTB38;;chr8:72756267..72756296,-!p4@MSC!0.76!7.31!MSC;;chr2:66662895..66662907,+!p3@MEIS1!0.76!6.09!MEIS1;;chr7:139762641..139762768,-!p1@PARP12!0.75!69.95!PARP12;;chr22:38598086..38598105,+!p1@MAFF!0.75!54.35!MAFF;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.63!SIX2;;chr19:46801639..46801699,+!p1@HIF3A!0.75!4.63!HIF3A;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.63!HOXA7;;chr18:19749517..19749531,+!p3@GATA6!0.74!8.53!GATA6;;chr15:57511609..57511651,+!p2@TCF12!0.74!8.04!TCF12;;chr14:24630902..24630948,+!p2@IRF9!0.74!5.61!IRF9;;chr17:46622205..46622218,-!p3@HOXB2!0.74!5.36!HOXB2;;chr2:231084659..231084721,-!p1@SP110!0.73!113.81!SP110;;chr17:38256822..38256851,-!p1@NR1D1!0.73!38.26!NR1D1;;chr14:61116183..61116208,-!p1@SIX1!0.73!18.28!SIX1;;chr8:72756637..72756664,-!p3@MSC!0.73!5.12!MSC;;chr6:36355486..36355497,-!p3@ETV7!0.73!4.39!ETV7;;chr2:145275162..145275202,-!p2@ZEB2!0.72!28.03!ZEB2;;chr11:65430554..65430579,-!p3@RELA!0.72!11.94!RELA;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.07!ZFP64;;chr8:106330696..106330719,+!p2@ZFPM2!0.72!5.61!ZFPM2;;chr9:4300050..4300118,-!p1@GLIS3!0.71!29.98!GLIS3;;chr4:81118647..81118666,+!p1@PRDM8!0.71!5.61!PRDM8;;chr1:170632959..170632987,+!p4@PRRX1!0.71!4.63!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.14!CREB3L1;;chr12:66218923..66218934,+!p14@HMGA2!0.71!4.14!HMGA2;;chr5:131826457..131826514,-!p1@IRF1!0.70!178.40!IRF1;;chr12:124873357..124873401,-!p1@NCOR2!0.70!52.89!NCOR2;;chr17:59477233..59477263,+!p1@TBX2!0.70!13.89!TBX2;;chr1:158979851..158979865,+!p5@IFI16!0.70!9.75!IFI16;;chr6:106534192..106534224,+!p1@PRDM1!0.69!12.19!PRDM1;;chr2:28618532..28618610,+!p4@FOSL2!0.69!7.07!FOSL2;;chr2:46612334..46612349,+!p6@EPAS1!0.69!5.36!EPAS1;;chr7:44143997..44144008,+!p3@AEBP1!0.69!5.12!AEBP1;;chr7:1577899..1577943,+!p3@MAFK!0.69!3.90!MAFK;;chr7:27169801..27169844,-!p2@HOXA4!0.69!3.90!HOXA4;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.90!HOXA9;;chr1:170632051..170632081,+!p16@PRRX1!0.69!3.90!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.69!3.90!PRRX1;;chr1:201979703..201979721,+!p2@ELF3!0.69!3.90!ELF3;;chr20:47894569..47894799,-!p1@ZNFX1!0.68!116.74!ZNFX1;;chr19:52074502..52074587,+!p1@ZNF175!0.68!15.60!ZNF175;;chr15:37390850..37390909,-!p3@MEIS2!0.67!7.80!MEIS2;;chr2:200322654..200322707,-!p2@SATB2!0.67!5.61!SATB2;;chr2:66662510..66662521,+!p6@MEIS1!0.67!3.66!MEIS1;;chr11:65429891..65429915,-!p7@RELA!0.67!3.66!RELA;;chr11:65668011..65668020,-!p3@FOSL1!0.67!3.66!FOSL1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.67!3.66!HOXC5;;chr8:71157595..71157616,-!p13@NCOA2!0.67!3.66!NCOA2;;chr8:77593750..77593757,+!p3@ZFHX4!0.67!3.66!ZFHX4;;chr2:66662281..66662308,+!p1@MEIS1!0.66!14.14!MEIS1;;chr7:19157248..19157268,-!p1@TWIST1!0.66!11.21!TWIST1;;chr10:104155659..104155676,+!p4@NFKB2!0.66!4.63!NFKB2;;chr1:151032860..151032918,+!p1@MLLT11!0.65!48.74!MLLT11;;chr19:13136130..13136165,+!p6@NFIX!0.65!4.87!NFIX;;chr2:231077626..231077651,-!p6@SP110!0.65!4.63!SP110;;chr9:14083467..14083483,-!p4@NFIB!0.64!9.26!NFIB;;chr17:46622440..46622477,-!p5@HOXB2!0.64!3.90!HOXB2;;chr18:53068911..53068935,-!p4@TCF4!0.64!3.90!TCF4;;chr17:46659728..46659749,-!p3@HOXB3!0.64!3.41!HOXB3;;chr7:27183325..27183338,-!p5@HOXA5!0.64!3.41!HOXA5;;chr19:9609272..9609297,-!p1@ZNF560!0.64!3.41!ZNF560;;chr1:170632439..170632465,+!p11@PRRX1!0.64!3.41!PRRX1;;chr2:113994526..113994556,-!p3@PAX8!0.64!3.41!PAX8;;chr10:131762504..131762555,-!p1@EBF3!0.64!3.41!EBF3;;chr12:54402790..54402805,+!p2@HOXC8!0.64!3.41!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!0.64!3.41!HOXC6;;chr19:50169013..50169062,-!p2@IRF3!0.63!22.18!IRF3;;chr1:935467..935484,-!p1@HES4!0.63!16.57!HES4;;chr2:231084820..231084836,-!p5@SP110!0.63!3.90!SP110;;chr5:139492456..139492489,+!p7@PURA!0.62!3.17!PURA;;chr7:27153428..27153440,-!p3@HOXA3!0.62!3.17!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.62!3.17!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!0.62!3.17!HOXA11;;chr15:67458836..67458859,+!p22@SMAD3!0.62!3.17!SMAD3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.62!3.17!SEBOX;;chr1:170632028..170632043,+!p20@PRRX1!0.62!3.17!PRRX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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002593;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11364-117I5 | |id=FF:11364-117I5 | ||
|is_a=EFO:0002091;;FF:0000173 | |is_a=EFO:0002091;;FF:0000173 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11988 | |||
|library_id_phase_based=2:CNhs11988 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11364 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GAGTGG.11364 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11364 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GAGTGG.11364 | |||
|name=Smooth Muscle Cells - Internal Thoracic Artery, donor2 | |name=Smooth Muscle Cells - Internal Thoracic Artery, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11988,LSID836,release011,COMPLETED | |profile_hcage=CNhs11988,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA358-R10a | |rna_catalog_number=CA358-R10a | ||
| Line 58: | Line 82: | ||
|rna_tube_id=117I5 | |rna_tube_id=117I5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.GAGTGG | |||
|sample_age=35 | |sample_age=35 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=GZF1:2.35306595016;EN1,2:2.34312839726;IRF7:2.30373277136;IRF1,2:2.10821354661;NKX2-2,8:1.80786794496;ALX4:1.67991179311;HMGA1,2:1.43033277086;EVI1:1.39940124069;HSF1,2:1.38768911952;UFEwm:1.29768336902;MYBL2:1.27407670583;NKX3-1:1.27068716846;KLF4:1.24646560341;HIF1A:1.23098289347;RXR{A,B,G}:1.19916504431;ONECUT1,2:1.17792611497;TAL1_TCF{3,4,12}:1.14934349306;IKZF1:1.14110789513;XBP1:1.08852892805;TLX1..3_NFIC{dimer}:1.08287710797;POU6F1:1.05918545183;GLI1..3:1.02603276086;EBF1:0.955736708039;PPARG:0.932272879157;CDC5L:0.904700282738;FOXL1:0.872550395257;STAT2,4,6:0.851602714396;GTF2A1,2:0.845028602562;NR1H4:0.842674187001;FOXD3:0.840255615553;ATF6:0.795757469703;ZBTB6:0.79066611446;GCM1,2:0.779316598528;TFAP4:0.766646715672;ZIC1..3:0.748181207826;ZNF238:0.727815909763;NKX3-2:0.723033162897;HOX{A5,B5}:0.711094152575;NFE2L1:0.708150025509;HES1:0.670455192985;NFATC1..3:0.669199993302;XCPE1{core}:0.665043908785;TFCP2:0.661195441193;HOX{A6,A7,B6,B7}:0.651545943089;TP53:0.651503420785;GFI1B:0.639762993704;PRDM1:0.639297843007;TBP:0.599710792907;NFIX:0.58635110148;SPZ1:0.573735100892;TEF:0.571710951533;MZF1:0.57079625113;TEAD1:0.544340234312;HOX{A4,D4}:0.516395622033;TOPORS:0.515241645557;ALX1:0.472852538682;HBP1_HMGB_SSRP1_UBTF:0.466077246026;HMX1:0.450565374375;PAX3,7:0.421316781692;PATZ1:0.418785166435;AIRE:0.410676890855;GATA4:0.400902476023;ADNP_IRX_SIX_ZHX:0.400614230476;SRF:0.377228127002;PAX1,9:0.372788768808;TFAP2B:0.367223314398;MTE{core}:0.35231617862;FOX{I1,J2}:0.346148137573;ZNF384:0.341559179864;HAND1,2:0.341339973526;ESR1:0.338827147979;MAFB:0.337121299071;FOXO1,3,4:0.324773880878;GTF2I:0.320867220792;HLF:0.313724989474;MYFfamily:0.312686923845;MTF1:0.309884207331;NR6A1:0.294188319162;NFKB1_REL_RELA:0.292301952497;CRX:0.289594413789;ESRRA:0.28398801496;POU3F1..4:0.256115602537;HIC1:0.244746478961;NR3C1:0.218162031729;ELK1,4_GABP{A,B1}:0.179913859416;SMAD1..7,9:0.156337797528;CDX1,2,4:0.155406366342;REST:0.15372785716;TLX2:0.152584031237;MAZ:0.150015994571;NFE2L2:0.142263049914;LHX3,4:0.117792508337;FOXQ1:0.110550041033;BACH2:0.101387370682;NHLH1,2:0.0952787089869;FOS_FOS{B,L1}_JUN{B,D}:0.0943398502096;FOXM1:0.0774331365115;ZNF423:0.0767094178033;PAX5:0.0713983194083;TFAP2{A,C}:0.060636087541;CEBPA,B_DDIT3:0.0377479030289;ZNF148:0.0369368002201;RXRA_VDR{dimer}:0.0189939925048;AR:0.0188996283835;HNF1A:0.0174165389182;PRRX1,2:0.0102655506425;NANOG{mouse}:0.0056534699832;ZBTB16:-0.0120556904683;DMAP1_NCOR{1,2}_SMARC:-0.031159737125;RREB1:-0.0353693845785;NFIL3:-0.046959333058;ELF1,2,4:-0.0527089466565;LMO2:-0.0541995912553;POU5F1:-0.063161664269;MED-1{core}:-0.110083322442;bHLH_family:-0.114009756945;HOXA9_MEIS1:-0.125615410958;ARID5B:-0.145850942363;POU2F1..3:-0.148206747925;SPI1:-0.150750359925;IKZF2:-0.160217872196;HNF4A_NR2F1,2:-0.174370797831;FOSL2:-0.181901452576;AHR_ARNT_ARNT2:-0.189689004841;RUNX1..3:-0.209653046332;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.22190142718;YY1:-0.242581251599;ETS1,2:-0.242996517378;ZFP161:-0.266762167079;FOXP3:-0.276149211345;JUN:-0.284592813415;BPTF:-0.287250675414;SP1:-0.301255698582;NRF1:-0.310726443906;PAX2:-0.325145307237;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.334303281105;SPIB:-0.354548689134;NFE2:-0.360861106725;SOX17:-0.38326200169;FOXP1:-0.387845365444;POU1F1:-0.400685100916;LEF1_TCF7_TCF7L1,2:-0.408769461592;ZNF143:-0.438251946015;DBP:-0.444029944128;EGR1..3:-0.452800030419;PAX8:-0.509271354006;CREB1:-0.528050509341;TBX4,5:-0.529554960677;TGIF1:-0.530241133085;VSX1,2:-0.532048826206;MYB:-0.544189136516;RFX1:-0.593332823259;ATF5_CREB3:-0.598461554053;FOX{D1,D2}:-0.599853595417;PITX1..3:-0.633760039051;SREBF1,2:-0.642945694425;SOX{8,9,10}:-0.684596438128;MEF2{A,B,C,D}:-0.727427157468;PBX1:-0.728077436955;RBPJ:-0.730132334037;NR5A1,2:-0.733855663687;STAT1,3:-0.754159123207;SNAI1..3:-0.785187972342;E2F1..5:-0.787865117775;GFI1:-0.803997636667;ZEB1:-0.838806710611;SOX2:-0.85008176415;EP300:-0.852687973562;T:-0.882680501444;PAX4:-0.898595411485;FOXN1:-0.899202377885;ATF4:-0.908552190034;SOX5:-0.911629179759;BREu{core}:-0.969576615603;CUX2:-0.972551207789;ATF2:-0.984311556037;GATA6:-1.0074512504;MYOD1:-1.03451439012;TFDP1:-1.04165929379;NKX2-3_NKX2-5:-1.06808103109;RFX2..5_RFXANK_RFXAP:-1.11705441527;NKX2-1,4:-1.15265116926;PAX6:-1.25725571884;FOX{F1,F2,J1}:-1.25906897161;STAT5{A,B}:-1.2791540287;NKX6-1,2:-1.31993051875;NFY{A,B,C}:-1.38276942224;PDX1:-1.38771500039;OCT4_SOX2{dimer}:-1.43012253879;RORA:-1.45767015342;NANOG:-1.56673351808;FOXA2:-1.78444782583 | |top_motifs=GZF1:2.35306595016;EN1,2:2.34312839726;IRF7:2.30373277136;IRF1,2:2.10821354661;NKX2-2,8:1.80786794496;ALX4:1.67991179311;HMGA1,2:1.43033277086;EVI1:1.39940124069;HSF1,2:1.38768911952;UFEwm:1.29768336902;MYBL2:1.27407670583;NKX3-1:1.27068716846;KLF4:1.24646560341;HIF1A:1.23098289347;RXR{A,B,G}:1.19916504431;ONECUT1,2:1.17792611497;TAL1_TCF{3,4,12}:1.14934349306;IKZF1:1.14110789513;XBP1:1.08852892805;TLX1..3_NFIC{dimer}:1.08287710797;POU6F1:1.05918545183;GLI1..3:1.02603276086;EBF1:0.955736708039;PPARG:0.932272879157;CDC5L:0.904700282738;FOXL1:0.872550395257;STAT2,4,6:0.851602714396;GTF2A1,2:0.845028602562;NR1H4:0.842674187001;FOXD3:0.840255615553;ATF6:0.795757469703;ZBTB6:0.79066611446;GCM1,2:0.779316598528;TFAP4:0.766646715672;ZIC1..3:0.748181207826;ZNF238:0.727815909763;NKX3-2:0.723033162897;HOX{A5,B5}:0.711094152575;NFE2L1:0.708150025509;HES1:0.670455192985;NFATC1..3:0.669199993302;XCPE1{core}:0.665043908785;TFCP2:0.661195441193;HOX{A6,A7,B6,B7}:0.651545943089;TP53:0.651503420785;GFI1B:0.639762993704;PRDM1:0.639297843007;TBP:0.599710792907;NFIX:0.58635110148;SPZ1:0.573735100892;TEF:0.571710951533;MZF1:0.57079625113;TEAD1:0.544340234312;HOX{A4,D4}:0.516395622033;TOPORS:0.515241645557;ALX1:0.472852538682;HBP1_HMGB_SSRP1_UBTF:0.466077246026;HMX1:0.450565374375;PAX3,7:0.421316781692;PATZ1:0.418785166435;AIRE:0.410676890855;GATA4:0.400902476023;ADNP_IRX_SIX_ZHX:0.400614230476;SRF:0.377228127002;PAX1,9:0.372788768808;TFAP2B:0.367223314398;MTE{core}:0.35231617862;FOX{I1,J2}:0.346148137573;ZNF384:0.341559179864;HAND1,2:0.341339973526;ESR1:0.338827147979;MAFB:0.337121299071;FOXO1,3,4:0.324773880878;GTF2I:0.320867220792;HLF:0.313724989474;MYFfamily:0.312686923845;MTF1:0.309884207331;NR6A1:0.294188319162;NFKB1_REL_RELA:0.292301952497;CRX:0.289594413789;ESRRA:0.28398801496;POU3F1..4:0.256115602537;HIC1:0.244746478961;NR3C1:0.218162031729;ELK1,4_GABP{A,B1}:0.179913859416;SMAD1..7,9:0.156337797528;CDX1,2,4:0.155406366342;REST:0.15372785716;TLX2:0.152584031237;MAZ:0.150015994571;NFE2L2:0.142263049914;LHX3,4:0.117792508337;FOXQ1:0.110550041033;BACH2:0.101387370682;NHLH1,2:0.0952787089869;FOS_FOS{B,L1}_JUN{B,D}:0.0943398502096;FOXM1:0.0774331365115;ZNF423:0.0767094178033;PAX5:0.0713983194083;TFAP2{A,C}:0.060636087541;CEBPA,B_DDIT3:0.0377479030289;ZNF148:0.0369368002201;RXRA_VDR{dimer}:0.0189939925048;AR:0.0188996283835;HNF1A:0.0174165389182;PRRX1,2:0.0102655506425;NANOG{mouse}:0.0056534699832;ZBTB16:-0.0120556904683;DMAP1_NCOR{1,2}_SMARC:-0.031159737125;RREB1:-0.0353693845785;NFIL3:-0.046959333058;ELF1,2,4:-0.0527089466565;LMO2:-0.0541995912553;POU5F1:-0.063161664269;MED-1{core}:-0.110083322442;bHLH_family:-0.114009756945;HOXA9_MEIS1:-0.125615410958;ARID5B:-0.145850942363;POU2F1..3:-0.148206747925;SPI1:-0.150750359925;IKZF2:-0.160217872196;HNF4A_NR2F1,2:-0.174370797831;FOSL2:-0.181901452576;AHR_ARNT_ARNT2:-0.189689004841;RUNX1..3:-0.209653046332;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.22190142718;YY1:-0.242581251599;ETS1,2:-0.242996517378;ZFP161:-0.266762167079;FOXP3:-0.276149211345;JUN:-0.284592813415;BPTF:-0.287250675414;SP1:-0.301255698582;NRF1:-0.310726443906;PAX2:-0.325145307237;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.334303281105;SPIB:-0.354548689134;NFE2:-0.360861106725;SOX17:-0.38326200169;FOXP1:-0.387845365444;POU1F1:-0.400685100916;LEF1_TCF7_TCF7L1,2:-0.408769461592;ZNF143:-0.438251946015;DBP:-0.444029944128;EGR1..3:-0.452800030419;PAX8:-0.509271354006;CREB1:-0.528050509341;TBX4,5:-0.529554960677;TGIF1:-0.530241133085;VSX1,2:-0.532048826206;MYB:-0.544189136516;RFX1:-0.593332823259;ATF5_CREB3:-0.598461554053;FOX{D1,D2}:-0.599853595417;PITX1..3:-0.633760039051;SREBF1,2:-0.642945694425;SOX{8,9,10}:-0.684596438128;MEF2{A,B,C,D}:-0.727427157468;PBX1:-0.728077436955;RBPJ:-0.730132334037;NR5A1,2:-0.733855663687;STAT1,3:-0.754159123207;SNAI1..3:-0.785187972342;E2F1..5:-0.787865117775;GFI1:-0.803997636667;ZEB1:-0.838806710611;SOX2:-0.85008176415;EP300:-0.852687973562;T:-0.882680501444;PAX4:-0.898595411485;FOXN1:-0.899202377885;ATF4:-0.908552190034;SOX5:-0.911629179759;BREu{core}:-0.969576615603;CUX2:-0.972551207789;ATF2:-0.984311556037;GATA6:-1.0074512504;MYOD1:-1.03451439012;TFDP1:-1.04165929379;NKX2-3_NKX2-5:-1.06808103109;RFX2..5_RFXANK_RFXAP:-1.11705441527;NKX2-1,4:-1.15265116926;PAX6:-1.25725571884;FOX{F1,F2,J1}:-1.25906897161;STAT5{A,B}:-1.2791540287;NKX6-1,2:-1.31993051875;NFY{A,B,C}:-1.38276942224;PDX1:-1.38771500039;OCT4_SOX2{dimer}:-1.43012253879;RORA:-1.45767015342;NANOG:-1.56673351808;FOXA2:-1.78444782583 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11364-117I5;search_select_hide=table117:FF:11364-117I5 | |||
}} | }} | ||
Latest revision as of 17:55, 4 June 2020
| Name: | Smooth Muscle Cells - Internal Thoracic Artery, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11988 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11988
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11988
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.867 |
| 10 | 10 | 0.427 |
| 100 | 100 | 0.926 |
| 101 | 101 | 0.504 |
| 102 | 102 | 0.881 |
| 103 | 103 | 0.244 |
| 104 | 104 | 0.668 |
| 105 | 105 | 0.0522 |
| 106 | 106 | 0.0388 |
| 107 | 107 | 0.103 |
| 108 | 108 | 0.617 |
| 109 | 109 | 0.467 |
| 11 | 11 | 0.473 |
| 110 | 110 | 0.323 |
| 111 | 111 | 0.856 |
| 112 | 112 | 0.3 |
| 113 | 113 | 0.0511 |
| 114 | 114 | 0.594 |
| 115 | 115 | 0.137 |
| 116 | 116 | 0.0595 |
| 117 | 117 | 0.261 |
| 118 | 118 | 0.621 |
| 119 | 119 | 0.901 |
| 12 | 12 | 0.363 |
| 120 | 120 | 0.119 |
| 121 | 121 | 0.999 |
| 122 | 122 | 0.143 |
| 123 | 123 | 0.362 |
| 124 | 124 | 0.332 |
| 125 | 125 | 0.183 |
| 126 | 126 | 0.885 |
| 127 | 127 | 0.941 |
| 128 | 128 | 0.112 |
| 129 | 129 | 0.75 |
| 13 | 13 | 0.825 |
| 130 | 130 | 0.628 |
| 131 | 131 | 0.529 |
| 132 | 132 | 0.435 |
| 133 | 133 | 0.684 |
| 134 | 134 | 0.846 |
| 135 | 135 | 0.568 |
| 136 | 136 | 0.728 |
| 137 | 137 | 0.988 |
| 138 | 138 | 0.759 |
| 139 | 139 | 0.349 |
| 14 | 14 | 0.319 |
| 140 | 140 | 0.933 |
| 141 | 141 | 0.441 |
| 142 | 142 | 0.806 |
| 143 | 143 | 0.631 |
| 144 | 144 | 0.621 |
| 145 | 145 | 0.902 |
| 146 | 146 | 0.576 |
| 147 | 147 | 0.00642 |
| 148 | 148 | 0.408 |
| 149 | 149 | 0.247 |
| 15 | 15 | 0.684 |
| 150 | 150 | 0.0604 |
| 151 | 151 | 0.446 |
| 152 | 152 | 0.0234 |
| 153 | 153 | 0.222 |
| 154 | 154 | 0.905 |
| 155 | 155 | 0.0403 |
| 156 | 156 | 0.793 |
| 157 | 157 | 0.444 |
| 158 | 158 | 0.0119 |
| 159 | 159 | 0.262 |
| 16 | 16 | 0.0311 |
| 160 | 160 | 0.644 |
| 161 | 161 | 0.985 |
| 162 | 162 | 0.703 |
| 163 | 163 | 0.692 |
| 164 | 164 | 0.00681 |
| 165 | 165 | 0.515 |
| 166 | 166 | 0.106 |
| 167 | 167 | 0.36 |
| 168 | 168 | 0.817 |
| 169 | 169 | 0.118 |
| 17 | 17 | 0.291 |
| 18 | 18 | 0.128 |
| 19 | 19 | 0.145 |
| 2 | 2 | 0.168 |
| 20 | 20 | 0.763 |
| 21 | 21 | 0.301 |
| 22 | 22 | 0.409 |
| 23 | 23 | 0.157 |
| 24 | 24 | 0.546 |
| 25 | 25 | 0.0947 |
| 26 | 26 | 0.767 |
| 27 | 27 | 0.65 |
| 28 | 28 | 0.277 |
| 29 | 29 | 0.097 |
| 3 | 3 | 0.17 |
| 30 | 30 | 0.702 |
| 31 | 31 | 0.738 |
| 32 | 32 | 9.69612e-7 |
| 33 | 33 | 0.533 |
| 34 | 34 | 0.965 |
| 35 | 35 | 0.774 |
| 36 | 36 | 0.276 |
| 37 | 37 | 0.0207 |
| 38 | 38 | 0.998 |
| 39 | 39 | 0.104 |
| 4 | 4 | 0.0348 |
| 40 | 40 | 0.163 |
| 41 | 41 | 0.718 |
| 42 | 42 | 0.92 |
| 43 | 43 | 0.318 |
| 44 | 44 | 0.213 |
| 45 | 45 | 0.779 |
| 46 | 46 | 0.664 |
| 47 | 47 | 0.989 |
| 48 | 48 | 0.86 |
| 49 | 49 | 0.255 |
| 5 | 5 | 0.957 |
| 50 | 50 | 0.472 |
| 51 | 51 | 0.805 |
| 52 | 52 | 0.993 |
| 53 | 53 | 0.271 |
| 54 | 54 | 0.751 |
| 55 | 55 | 0.0982 |
| 56 | 56 | 0.543 |
| 57 | 57 | 0.776 |
| 58 | 58 | 0.469 |
| 59 | 59 | 0.176 |
| 6 | 6 | 0.983 |
| 60 | 60 | 0.344 |
| 61 | 61 | 0.632 |
| 62 | 62 | 0.754 |
| 63 | 63 | 0.339 |
| 64 | 64 | 0.728 |
| 65 | 65 | 0.24 |
| 66 | 66 | 0.139 |
| 67 | 67 | 0.166 |
| 68 | 68 | 0.885 |
| 69 | 69 | 0.64 |
| 7 | 7 | 0.174 |
| 70 | 70 | 0.543 |
| 71 | 71 | 0.596 |
| 72 | 72 | 0.656 |
| 73 | 73 | 0.0118 |
| 74 | 74 | 0.287 |
| 75 | 75 | 0.221 |
| 76 | 76 | 0.315 |
| 77 | 77 | 0.00998 |
| 78 | 78 | 0.744 |
| 79 | 79 | 0.032 |
| 8 | 8 | 0.409 |
| 80 | 80 | 0.405 |
| 81 | 81 | 0.806 |
| 82 | 82 | 0.55 |
| 83 | 83 | 0.975 |
| 84 | 84 | 0.617 |
| 85 | 85 | 0.0958 |
| 86 | 86 | 0.346 |
| 87 | 87 | 0.00675 |
| 88 | 88 | 0.475 |
| 89 | 89 | 0.0112 |
| 9 | 9 | 0.382 |
| 90 | 90 | 0.713 |
| 91 | 91 | 0.76 |
| 92 | 92 | 0.259 |
| 93 | 93 | 0.836 |
| 94 | 94 | 0.803 |
| 95 | 95 | 0.155 |
| 96 | 96 | 0.476 |
| 97 | 97 | 0.428 |
| 98 | 98 | 0.859 |
| 99 | 99 | 0.00835 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11988
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000173 human smooth muscle cell of the internal thoracic artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)
0002593 (smooth muscle cell of the internal thoracic artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002456 (internal thoracic artery)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000173 (human smooth muscle cell of the internal thoracic artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
