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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005662
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005662
|accession_numbers=CAGE;DRX008314;DRR009186;DRZ000611;DRZ001996;DRZ011961;DRZ013346
|accession_numbers_RNASeq=sRNA-Seq;DRX037066;DRR041432;DRZ007074
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.47!291.23!SOX15;;chr3:111314186..111314204,-!p1@ZBED2!2.08!118.93!ZBED2;;chr15:83953397..83953425,-!p1@BNC1!1.90!90.28!BNC1;;chr3:189507432..189507459,+!p1@TP63!1.88!74.99!TP63;;chr11:34642612..34642646,+!p1@EHF!1.83!67.25!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.77!57.90!IRF6;;chr1:209979467..209979494,-!p1@IRF6!1.74!60.02!IRF6;;chr12:54785074..54785122,-!p2@ZNF385A!1.57!54.89!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.53!37.30!ZNF385A;;chr6:10415276..10415341,-!p2@TFAP2A!1.48!35.79!TFAP2A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.45!27.44!ZBED1;;chr17:7492684..7492778,-!p2@SOX15!1.43!53.58!SOX15;;chr7:27205106..27205134,-!p2@HOXA9!1.35!21.41!HOXA9;;chr6:10412600..10412637,-!p1@TFAP2A!1.32!33.07!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.31!19.40!IRX2;;chr12:66218255..66218304,+!p3@HMGA2!1.28!48.25!HMGA2;;chr6:10415484..10415508,-!p3@TFAP2A!1.26!17.29!TFAP2A;;chr15:101069113..101069169,-!p1@CERS3!1.26!17.09!CERS3;;chr7:27205136..27205164,-!p1@HOXA9!1.25!16.79!HOXA9;;chr13:73633131..73633149,+!p1@KLF5!1.23!169.19!KLF5;;chr3:111314230..111314241,-!p2@ZBED2!1.23!16.08!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.20!14.98!HES2;;chr6:10419768..10419819,-!p6@TFAP2A!1.20!14.78!TFAP2A;;chr11:65667884..65667895,-!p2@FOSL1!1.18!54.29!FOSL1;;chr11:65686802..65686818,+!p6@DRAP1!1.18!24.43!DRAP1;;chr5:72744594..72744609,-!p1@FOXD1!1.17!62.83!FOXD1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.10!102.54!PPP1R13L;;chr20:55204351..55204377,+!p1@TFAP2C!1.10!14.78!TFAP2C;;chr8:102504651..102504683,+!p1@GRHL2!1.10!11.66!GRHL2;;chr15:83953373..83953386,-!p2@BNC1!1.09!11.36!BNC1;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.75!ETV4;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.39!FOXQ1;;chr8:10588010..10588030,-!p1@SOX7!1.05!10.25!SOX7;;chr2:46524897..46524911,+!p2@EPAS1!1.03!27.75!EPAS1;;chr12:27485762..27485776,+!p3@ARNTL2!1.00!24.83!ARNTL2;;chr8:49833978..49833996,-!p1@SNAI2!0.98!178.94!SNAI2;;chr11:65686732..65686756,+!p2@DRAP1!0.98!37.50!DRAP1;;chr5:1887070..1887114,-!p1@IRX4!0.98!8.44!IRX4;;chr2:122042770..122042785,-!p1@TFCP2L1!0.96!8.14!TFCP2L1;;chr11:34642656..34642667,+!p2@EHF!0.96!8.04!EHF;;chr8:49833948..49833973,-!p2@SNAI2!0.95!52.07!SNAI2;;chr12:66218598..66218645,+!p2@HMGA2!0.95!37.50!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.94!11.46!HMGA2;;chr11:65667846..65667868,-!p1@FOSL1!0.92!199.85!FOSL1;;chr12:66218183..66218209,+!p4@HMGA2!0.92!14.48!HMGA2;;chr1:209979449..209979460,-!p3@IRF6!0.92!7.24!IRF6;;chr20:18038521..18038571,-!p1@OVOL2!0.89!6.84!OVOL2;;chr4:299227..299272,-!p1@ZNF732!0.89!6.74!ZNF732;;chr17:41623009..41623053,-!p4@ETV4!0.87!10.66!ETV4;;chr20:50721803..50721857,-!p2@ZFP64!0.86!10.05!ZFP64;;chr17:70117153..70117174,+!p1@SOX9!0.85!67.25!SOX9;;chr3:32023232..32023273,+!p1@ZNF860!0.85!8.95!ZNF860;;chr4:57547454..57547469,-!p1@HOPX!0.85!6.13!HOPX;;chr7:27135591..27135658,-!p1@HOXA1!0.84!11.96!HOXA1;;chr2:63277948..63277974,+!p1@OTX1!0.84!5.93!OTX1;;chr14:21566731..21566836,-!p1@ZNF219!0.81!63.63!ZNF219;;chr5:72744445..72744466,-!p2@FOXD1!0.81!9.35!FOXD1;;chr5:2751785..2751808,-!p2@IRX2!0.81!5.43!IRX2;;chr8:128748308..128748324,+!p2@MYC!0.79!157.73!MYC;;chr17:45928443..45928473,-!p2@SP6!0.77!4.93!SP6;;chr12:27485823..27485868,+!p2@ARNTL2!0.76!21.21!ARNTL2;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.72!HOXC10;;chr17:80797886..80797906,-!p1@ZNF750!0.76!4.72!ZNF750;;chr1:158979792..158979814,+!p2@IFI16!0.73!46.24!IFI16;;chr12:48298765..48298783,-!p2@VDR!0.73!9.85!VDR;;chr3:189507460..189507471,+!p3@TP63!0.73!4.42!TP63;;chr11:65554528..65554546,+!p1@OVOL1!0.72!4.22!OVOL1;;chr12:54332608..54332636,+!p1@HOXC13!0.71!4.12!HOXC13;;chr5:1887052..1887065,-!p2@IRX4!0.71!4.12!IRX4;;chr12:48298785..48298828,-!p1@VDR!0.70!23.72!VDR;;chr1:209979375..209979386,-!p4@IRF6!0.70!4.02!IRF6;;chr20:55205825..55205847,+!p2@TFAP2C!0.70!4.02!TFAP2C;;chr2:208030647..208030689,-!p1@KLF7!0.69!37.40!KLF7;;chr12:54380036..54380091,+!p4@HOXC10!0.69!3.92!HOXC10;;chr3:5021026..5021035,+!p5@BHLHE40!0.68!4.83!BHLHE40;;chr2:60778035..60778060,-!p4@BCL11A!0.68!4.72!BCL11A;;chr10:8095593..8095625,+!p3@GATA3!0.68!4.62!GATA3;;chr17:41623075..41623101,-!p9@ETV4!0.68!4.52!ETV4;;chr11:65668011..65668020,-!p3@FOSL1!0.68!3.82!FOSL1;;chr6:34204672..34204692,+!p1@HMGA1!0.67!486.26!HMGA1;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.13!HMGA2;;chr17:41623667..41623682,-!p8@ETV4!0.67!4.02!ETV4;;chr15:83953474..83953483,-!p3@BNC1!0.67!3.72!BNC1;;chr10:8100691..8100732,+!p5@GATA3!0.67!3.72!GATA3;;chr12:27485785..27485816,+!p1@ARNTL2!0.66!28.75!ARNTL2;;chr17:46132044..46132080,+!p4@NFE2L1!0.66!3.62!NFE2L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.66!3.62!TFAP2A;;chr17:7492504..7492520,-!p3@SOX15!0.65!3.42!SOX15;;chr11:120107344..120107351,+!p1@POU2F3!0.64!4.22!POU2F3;;chr6:10419824..10419840,-!p9@TFAP2A!0.64!3.32!TFAP2A;;chr3:189507523..189507535,+!p5@TP63!0.62!3.22!TP63;;chr19:22817119..22817145,+!p1@ZNF492!0.60!5.53!ZNF492;;chr17:41623259..41623278,-!p7@ETV4!0.60!3.62!ETV4;;chr5:50679228..5067928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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000312;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000362;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000357,CL:0000114,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor3.CNhs12031.11421-118F8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor3.CNhs12031.11421-118F8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor3.CNhs12031.11421-118F8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor3.CNhs12031.11421-118F8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor3.CNhs12031.11421-118F8.hg38.nobarcode.ctss.bed.gz
|id=FF:11421-118F8
|id=FF:11421-118F8
|is_a=EFO:0002091;;FF:0000082
|is_a=EFO:0002091;;FF:0000082
|is_obsolete=
|is_obsolete=
|library_id=CNhs12031
|library_id_phase_based=2:CNhs12031
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11421
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTTTCG.11421
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11421
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTTTCG.11421
|name=Keratinocyte - epidermal, donor3
|name=Keratinocyte - epidermal, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12031,LSID837,release011,COMPLETED
|profile_hcage=CNhs12031,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
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|rna_box=118
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|rna_catalog_number=CA102-R10a
Line 59: Line 82:
|rna_tube_id=118F8
|rna_tube_id=118F8
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10005.GTTTCG
|sample_age=46
|sample_age=46
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 81: Line 106:
|top_motifs=TP53:2.0144359463;TBX4,5:1.73929790175;TEF:1.71726481429;ZEB1:1.48135433829;PDX1:1.45941574383;POU1F1:1.41108301706;FOXM1:1.34739519423;SNAI1..3:1.34659129967;PPARG:1.18222989996;NKX3-2:1.16310341797;FOXQ1:1.14522565028;ONECUT1,2:1.13430249004;VSX1,2:0.904538446004;PAX1,9:0.869567069913;NKX2-3_NKX2-5:0.857648202922;ARID5B:0.853394302896;NKX2-1,4:0.851801143735;CDC5L:0.692628885972;NR5A1,2:0.674463398042;TEAD1:0.672509796268;ZNF148:0.628894559562;HOX{A4,D4}:0.621125170868;ADNP_IRX_SIX_ZHX:0.616505451319;UFEwm:0.600856049289;KLF4:0.600658288091;FOS_FOS{B,L1}_JUN{B,D}:0.573300074888;NFIL3:0.567308165634;NKX2-2,8:0.547234102558;PAX6:0.540301059758;XCPE1{core}:0.516177998413;bHLH_family:0.513643374175;E2F1..5:0.502895674238;MYOD1:0.496556262937;PAX4:0.494779121396;STAT5{A,B}:0.465413044483;T:0.465190999179;TBP:0.440620860629;LHX3,4:0.42313817387;POU6F1:0.398752982232;GFI1B:0.397160465342;ZBTB16:0.380660524492;EVI1:0.376171082982;BACH2:0.296287288895;CEBPA,B_DDIT3:0.282329420213;PAX8:0.276708071042;ZNF423:0.275514122445;LMO2:0.264453917376;POU2F1..3:0.258321667387;SP1:0.251601580168;TOPORS:0.243085077746;RBPJ:0.239670885863;ELK1,4_GABP{A,B1}:0.236976873946;GLI1..3:0.233133333118;GATA4:0.20713196138;IKZF1:0.19713553503;NR6A1:0.16002036745;FOSL2:0.156473228472;NFY{A,B,C}:0.132318634678;GFI1:0.125739567639;PITX1..3:0.125231253586;MYB:0.124122628594;HAND1,2:0.122439036842;OCT4_SOX2{dimer}:0.121382156241;TFAP2{A,C}:0.12071373998;AIRE:0.115479849295;ZNF238:0.111833122704;GCM1,2:0.110265176606;HLF:0.108001441439;NANOG:0.104714768348;ZBTB6:0.0966737626255;TFDP1:0.0846501821987;HMGA1,2:0.0835502733532;NR1H4:0.0790616742116;ZIC1..3:0.0679972009204;RXR{A,B,G}:0.0521823677961;HOX{A5,B5}:0.0339614773381;NRF1:0.0253319070695;ZNF143:0.00981917111548;HSF1,2:-0.00663108159571;POU5F1:-0.00886786065239;AR:-0.00959169100943;SMAD1..7,9:-0.0150990855103;REST:-0.0177925241518;ZNF384:-0.0234506702449;IRF7:-0.0413033793786;TLX1..3_NFIC{dimer}:-0.0426850416142;FOXL1:-0.0528719501091;SOX17:-0.056075257152;LEF1_TCF7_TCF7L1,2:-0.0928373682025;MTF1:-0.10275274904;TFCP2:-0.103018878181;CDX1,2,4:-0.106082244271;NR3C1:-0.131160519124;SPZ1:-0.146364653504;NKX3-1:-0.148391105725;HNF4A_NR2F1,2:-0.158179392482;YY1:-0.183061490656;NKX6-1,2:-0.191595739934;CRX:-0.199116549684;POU3F1..4:-0.205668585159;NFE2:-0.22309705786;ALX4:-0.224038406464;EP300:-0.26657190101;HNF1A:-0.274192584675;FOX{I1,J2}:-0.281895940429;NFKB1_REL_RELA:-0.291458448201;GATA6:-0.298764401158;FOXO1,3,4:-0.305991072246;HOX{A6,A7,B6,B7}:-0.317988200099;ELF1,2,4:-0.320028803583;HES1:-0.340768330006;RXRA_VDR{dimer}:-0.342270069694;SOX{8,9,10}:-0.34405932963;SPI1:-0.367478857146;RFX2..5_RFXANK_RFXAP:-0.374515918215;EN1,2:-0.375553919308;GTF2A1,2:-0.377273215924;FOX{F1,F2,J1}:-0.378575110387;ATF5_CREB3:-0.395836180611;RREB1:-0.401191684256;PAX2:-0.412836117161;PBX1:-0.416426090442;MYBL2:-0.419090330985;SPIB:-0.428781782473;TFAP4:-0.431553603152;IKZF2:-0.4333400091;BREu{core}:-0.435211385991;NFE2L2:-0.447109899761;MAZ:-0.452688282344;CREB1:-0.459546768593;FOXA2:-0.461932601233;GZF1:-0.471680203091;HIC1:-0.478791066513;PAX3,7:-0.48225687379;HIF1A:-0.484422871336;ALX1:-0.505791740514;EBF1:-0.534103948695;ATF2:-0.536997675581;MED-1{core}:-0.542818573474;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.54540243851;ZFP161:-0.548478409032;ETS1,2:-0.551048506989;GTF2I:-0.551533522821;RFX1:-0.554193758695;FOXN1:-0.557626921704;ATF4:-0.602517125649;PRDM1:-0.605080267117;MTE{core}:-0.623007191386;FOXD3:-0.636648106226;IRF1,2:-0.643155596687;STAT2,4,6:-0.643984895948;SOX2:-0.652957887011;MYFfamily:-0.657472799328;NFIX:-0.669804870404;CUX2:-0.685731514511;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.688967659967;RUNX1..3:-0.690780156073;PAX5:-0.693890369042;FOXP1:-0.703612555024;TFAP2B:-0.713169768312;ESR1:-0.724315844624;HOXA9_MEIS1:-0.733062853853;DMAP1_NCOR{1,2}_SMARC:-0.775173499199;SOX5:-0.775323148365;JUN:-0.776032650669;NHLH1,2:-0.781923168579;EGR1..3:-0.786730391352;NFE2L1:-0.822588100881;AHR_ARNT_ARNT2:-0.828877727112;MEF2{A,B,C,D}:-0.836417838901;MAFB:-0.864991671561;NFATC1..3:-0.870145620298;SRF:-0.909512514308;FOXP3:-0.91006483167;PRRX1,2:-0.911437567515;BPTF:-0.919251907377;ESRRA:-0.986609857487;TGIF1:-1.04773544273;HMX1:-1.11823015541;DBP:-1.1274325226;SREBF1,2:-1.18811131617;RORA:-1.19478959689;TLX2:-1.22260702435;STAT1,3:-1.22578470449;HBP1_HMGB_SSRP1_UBTF:-1.25507856461;FOX{D1,D2}:-1.28647862472;MZF1:-1.31201689951;PATZ1:-1.32968688563;TAL1_TCF{3,4,12}:-1.34378222979;ATF6:-1.37391515236;XBP1:-1.38969809244;NANOG{mouse}:-1.52870695142
|top_motifs=TP53:2.0144359463;TBX4,5:1.73929790175;TEF:1.71726481429;ZEB1:1.48135433829;PDX1:1.45941574383;POU1F1:1.41108301706;FOXM1:1.34739519423;SNAI1..3:1.34659129967;PPARG:1.18222989996;NKX3-2:1.16310341797;FOXQ1:1.14522565028;ONECUT1,2:1.13430249004;VSX1,2:0.904538446004;PAX1,9:0.869567069913;NKX2-3_NKX2-5:0.857648202922;ARID5B:0.853394302896;NKX2-1,4:0.851801143735;CDC5L:0.692628885972;NR5A1,2:0.674463398042;TEAD1:0.672509796268;ZNF148:0.628894559562;HOX{A4,D4}:0.621125170868;ADNP_IRX_SIX_ZHX:0.616505451319;UFEwm:0.600856049289;KLF4:0.600658288091;FOS_FOS{B,L1}_JUN{B,D}:0.573300074888;NFIL3:0.567308165634;NKX2-2,8:0.547234102558;PAX6:0.540301059758;XCPE1{core}:0.516177998413;bHLH_family:0.513643374175;E2F1..5:0.502895674238;MYOD1:0.496556262937;PAX4:0.494779121396;STAT5{A,B}:0.465413044483;T:0.465190999179;TBP:0.440620860629;LHX3,4:0.42313817387;POU6F1:0.398752982232;GFI1B:0.397160465342;ZBTB16:0.380660524492;EVI1:0.376171082982;BACH2:0.296287288895;CEBPA,B_DDIT3:0.282329420213;PAX8:0.276708071042;ZNF423:0.275514122445;LMO2:0.264453917376;POU2F1..3:0.258321667387;SP1:0.251601580168;TOPORS:0.243085077746;RBPJ:0.239670885863;ELK1,4_GABP{A,B1}:0.236976873946;GLI1..3:0.233133333118;GATA4:0.20713196138;IKZF1:0.19713553503;NR6A1:0.16002036745;FOSL2:0.156473228472;NFY{A,B,C}:0.132318634678;GFI1:0.125739567639;PITX1..3:0.125231253586;MYB:0.124122628594;HAND1,2:0.122439036842;OCT4_SOX2{dimer}:0.121382156241;TFAP2{A,C}:0.12071373998;AIRE:0.115479849295;ZNF238:0.111833122704;GCM1,2:0.110265176606;HLF:0.108001441439;NANOG:0.104714768348;ZBTB6:0.0966737626255;TFDP1:0.0846501821987;HMGA1,2:0.0835502733532;NR1H4:0.0790616742116;ZIC1..3:0.0679972009204;RXR{A,B,G}:0.0521823677961;HOX{A5,B5}:0.0339614773381;NRF1:0.0253319070695;ZNF143:0.00981917111548;HSF1,2:-0.00663108159571;POU5F1:-0.00886786065239;AR:-0.00959169100943;SMAD1..7,9:-0.0150990855103;REST:-0.0177925241518;ZNF384:-0.0234506702449;IRF7:-0.0413033793786;TLX1..3_NFIC{dimer}:-0.0426850416142;FOXL1:-0.0528719501091;SOX17:-0.056075257152;LEF1_TCF7_TCF7L1,2:-0.0928373682025;MTF1:-0.10275274904;TFCP2:-0.103018878181;CDX1,2,4:-0.106082244271;NR3C1:-0.131160519124;SPZ1:-0.146364653504;NKX3-1:-0.148391105725;HNF4A_NR2F1,2:-0.158179392482;YY1:-0.183061490656;NKX6-1,2:-0.191595739934;CRX:-0.199116549684;POU3F1..4:-0.205668585159;NFE2:-0.22309705786;ALX4:-0.224038406464;EP300:-0.26657190101;HNF1A:-0.274192584675;FOX{I1,J2}:-0.281895940429;NFKB1_REL_RELA:-0.291458448201;GATA6:-0.298764401158;FOXO1,3,4:-0.305991072246;HOX{A6,A7,B6,B7}:-0.317988200099;ELF1,2,4:-0.320028803583;HES1:-0.340768330006;RXRA_VDR{dimer}:-0.342270069694;SOX{8,9,10}:-0.34405932963;SPI1:-0.367478857146;RFX2..5_RFXANK_RFXAP:-0.374515918215;EN1,2:-0.375553919308;GTF2A1,2:-0.377273215924;FOX{F1,F2,J1}:-0.378575110387;ATF5_CREB3:-0.395836180611;RREB1:-0.401191684256;PAX2:-0.412836117161;PBX1:-0.416426090442;MYBL2:-0.419090330985;SPIB:-0.428781782473;TFAP4:-0.431553603152;IKZF2:-0.4333400091;BREu{core}:-0.435211385991;NFE2L2:-0.447109899761;MAZ:-0.452688282344;CREB1:-0.459546768593;FOXA2:-0.461932601233;GZF1:-0.471680203091;HIC1:-0.478791066513;PAX3,7:-0.48225687379;HIF1A:-0.484422871336;ALX1:-0.505791740514;EBF1:-0.534103948695;ATF2:-0.536997675581;MED-1{core}:-0.542818573474;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.54540243851;ZFP161:-0.548478409032;ETS1,2:-0.551048506989;GTF2I:-0.551533522821;RFX1:-0.554193758695;FOXN1:-0.557626921704;ATF4:-0.602517125649;PRDM1:-0.605080267117;MTE{core}:-0.623007191386;FOXD3:-0.636648106226;IRF1,2:-0.643155596687;STAT2,4,6:-0.643984895948;SOX2:-0.652957887011;MYFfamily:-0.657472799328;NFIX:-0.669804870404;CUX2:-0.685731514511;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.688967659967;RUNX1..3:-0.690780156073;PAX5:-0.693890369042;FOXP1:-0.703612555024;TFAP2B:-0.713169768312;ESR1:-0.724315844624;HOXA9_MEIS1:-0.733062853853;DMAP1_NCOR{1,2}_SMARC:-0.775173499199;SOX5:-0.775323148365;JUN:-0.776032650669;NHLH1,2:-0.781923168579;EGR1..3:-0.786730391352;NFE2L1:-0.822588100881;AHR_ARNT_ARNT2:-0.828877727112;MEF2{A,B,C,D}:-0.836417838901;MAFB:-0.864991671561;NFATC1..3:-0.870145620298;SRF:-0.909512514308;FOXP3:-0.91006483167;PRRX1,2:-0.911437567515;BPTF:-0.919251907377;ESRRA:-0.986609857487;TGIF1:-1.04773544273;HMX1:-1.11823015541;DBP:-1.1274325226;SREBF1,2:-1.18811131617;RORA:-1.19478959689;TLX2:-1.22260702435;STAT1,3:-1.22578470449;HBP1_HMGB_SSRP1_UBTF:-1.25507856461;FOX{D1,D2}:-1.28647862472;MZF1:-1.31201689951;PATZ1:-1.32968688563;TAL1_TCF{3,4,12}:-1.34378222979;ATF6:-1.37391515236;XBP1:-1.38969809244;NANOG{mouse}:-1.52870695142
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11421-118F8;search_select_hide=table117:FF:11421-118F8
}}
}}

Latest revision as of 18:00, 4 June 2020

Name:Keratinocyte - epidermal, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12031
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage46 years old adult
sexfemale
age46
cell typekeratinocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2568
catalog numberCA102-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005662
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12031 CAGE DRX008314 DRR009186
Accession ID Hg19

Library idBAMCTSS
CNhs12031 DRZ000611 DRZ001996
Accession ID Hg38

Library idBAMCTSS
CNhs12031 DRZ011961 DRZ013346
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005662
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.GTTTCG sRNA-Seq DRX037066 DRR041432
Accession ID Hg19

Library idBAMCTSS
SRhi10005.GTTTCG DRZ007074


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.195
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.339
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.28
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0389
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.154
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0299
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.127
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte1.036
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0774
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.092
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0416
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.386
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0047
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0416
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.625
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.37
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.114
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12031

Jaspar motifP-value
MA0002.20.244
MA0003.10.663
MA0004.10.634
MA0006.10.187
MA0007.10.639
MA0009.10.224
MA0014.10.385
MA0017.10.485
MA0018.22.76225e-4
MA0019.10.352
MA0024.10.206
MA0025.10.408
MA0027.10.524
MA0028.10.195
MA0029.10.843
MA0030.10.00841
MA0031.10.00747
MA0035.20.952
MA0038.10.355
MA0039.28.19011e-4
MA0040.10.00847
MA0041.10.964
MA0042.10.0736
MA0043.10.00172
MA0046.10.37
MA0047.20.233
MA0048.10.265
MA0050.12.64583e-4
MA0051.10.00619
MA0052.19.06142e-4
MA0055.10.00467
MA0057.10.0415
MA0058.10.406
MA0059.10.168
MA0060.10.288
MA0061.10.838
MA0062.20.761
MA0065.20.0207
MA0066.10.0311
MA0067.10.0706
MA0068.12.92177e-6
MA0069.10.497
MA0070.10.92
MA0071.10.888
MA0072.10.221
MA0073.10.941
MA0074.10.996
MA0076.10.937
MA0077.10.947
MA0078.10.847
MA0079.20.964
MA0080.21.86587e-7
MA0081.10.0879
MA0083.10.0061
MA0084.10.118
MA0087.10.0981
MA0088.10.253
MA0090.10.00151
MA0091.10.227
MA0092.10.78
MA0093.10.522
MA0099.20.00913
MA0100.10.615
MA0101.10.316
MA0102.20.00556
MA0103.13.07058e-7
MA0104.20.184
MA0105.10.405
MA0106.16.6113e-12
MA0107.10.213
MA0108.20.0183
MA0111.10.2
MA0112.20.157
MA0113.10.843
MA0114.10.202
MA0115.10.689
MA0116.10.0105
MA0117.10.741
MA0119.10.173
MA0122.10.26
MA0124.10.506
MA0125.10.21
MA0131.10.881
MA0135.10.573
MA0136.15.42921e-4
MA0137.20.00103
MA0138.20.161
MA0139.10.35
MA0140.10.607
MA0141.10.553
MA0142.10.0139
MA0143.10.518
MA0144.10.222
MA0145.10.249
MA0146.10.123
MA0147.10.0973
MA0148.10.992
MA0149.10.00781
MA0150.10.782
MA0152.10.713
MA0153.10.512
MA0154.10.384
MA0155.10.307
MA0156.10.0284
MA0157.10.0505
MA0159.10.951
MA0160.10.962
MA0162.10.135
MA0163.10.0892
MA0164.10.934
MA0258.10.694
MA0259.10.413



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12031

Novel motifP-value
10.141
100.49
1000.284
1010.348
1020.154
1030.182
1040.858
1050.437
1060.306
1070.108
1080.393
1092.64713e-4
110.115
1100.0589
1110.11
1120.259
1130.165
1140.173
1150.624
1160.683
1170.0665
1180.398
1190.268
120.646
1200.0122
1210.857
1220.366
1230.611
1240.163
1250.196
1260.248
1270.176
1280.661
1290.117
130.00619
1300.985
1310.463
1320.112
1330.0191
1340.109
1350.437
1360.0652
1370.448
1380.297
1390.868
140.883
1400.45
1410.0091
1420.278
1430.911
1440.207
1450.235
1460.176
1470.302
1480.411
1490.302
150.847
1500.122
1510.365
1520.0446
1530.83
1540.777
1550.795
1560.524
1570.606
1580.128
1590.734
160.0236
1600.0805
1610.0887
1620.337
1630.855
1640.209
1650.581
1660.622
1670.725
1680.369
1690.034
170.118
180.186
190.788
20.171
200.596
210.378
220.611
230.719
240.0178
250.909
260.0647
270.594
280.341
290.205
30.204
300.295
310.901
320.271
330.275
340.608
350.466
360.685
370.308
380.178
390.235
40.587
400.00732
410.67
420.349
430.541
440.0105
450.529
460.5
470.112
480.0193
490.85
50.692
500.442
510.647
520.805
530.632
540.853
550.901
560.29
570.198
580.79
590.227
60.446
600.409
610.387
620.97
630.122
640.271
650.372
660.223
670.731
680.531
690.19
70.411
700.149
710.0561
720.956
730.0234
740.168
750.0368
760.964
770.0629
780.0159
790.876
80.128
800.0595
810.517
820.769
830.835
840.302
850.716
860.698
870.05
880.987
890.0268
90.61
900.316
910.967
920.996
930.547
940.434
958.82679e-4
960.761
970.37
980.39
990.00366



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12031


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000082 (human epidermal keratinocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)

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