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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004792
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004792
|accession_numbers=CAGE;DRX008115;DRR008987;DRZ000412;DRZ001797;DRZ011762;DRZ013147
|accession_numbers_RNASeq=sRNA-Seq;DRX037070;DRR041436;DRZ007078
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002605
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002605
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.34!215.82!SOX2;;chr4:57547454..57547469,-!p1@HOPX!2.09!120.79!HOPX;;chr14:29234581..29234601,+!p2@FOXG1!2.08!118.22!FOXG1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.01!100.47!POU3F3;;chr14:33403881..33403924,+!p1@NPAS3!2.00!99.61!NPAS3;;chr3:181429741..181429767,+!p2@SOX2!1.94!86.16!SOX2;;chr14:29235961..29236008,+!p1@FOXG1!1.90!78.14!FOXG1;;chrX:25034067..25034088,-!p1@ARX!1.87!72.99!ARX;;chr9:126774018..126774055,+!p1@LHX2!1.73!52.09!LHX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.65!43.79!POU3F3;;chr14:29236269..29236285,+!p3@FOXG1!1.60!38.64!FOXG1;;chr6:19837592..19837621,+!p1@ID4!1.58!216.39!ID4;;chr7:100065686..100065701,-!p2@TSC22D4!1.58!36.92!TSC22D4;;chr1:2985760..2985774,+!p1@PRDM16!1.53!32.63!PRDM16;;chr11:31839488..31839515,-!p3@PAX6!1.50!30.34!PAX6;;chr13:72441315..72441454,-!p1@DACH1!1.49!58.11!DACH1;;chr11:31832658..31832681,-!p1@PAX6!1.48!28.91!PAX6;;chr19:13134772..13134822,+!p2@NFIX!1.46!40.07!NFIX;;chr11:31832862..31832884,-!p2@PAX6!1.46!28.05!PAX6;;chr6:108487289..108487302,+!p1@NR2E1!1.44!26.62!NR2E1;;chrX:139587228..139587234,-!p1@SOX3!1.44!26.33!SOX3;;chr16:51185172..51185197,-!p1@SALL1!1.43!26.05!SALL1;;chr6:45296048..45296082,+!p1@RUNX2!1.41!28.34!RUNX2;;chr6:99282475..99282501,+!p1@POU3F2!1.38!23.19!POU3F2;;chr2:63277948..63277974,+!p1@OTX1!1.37!22.33!OTX1;;chr10:119302232..119302265,+!p1@EMX2!1.35!21.18!EMX2;;chr20:20348740..20348757,+!p1@INSM1!1.34!20.90!INSM1;;chrX:82763292..82763317,+!p1@POU3F4!1.34!20.90!POU3F4;;chr2:5832508..5832524,+!p1@SOX11!1.33!20.61!SOX11;;chr14:33403648..33403710,+!p3@NPAS3!1.31!19.46!NPAS3;;chr9:126773880..126773895,+!p2@LHX2!1.31!19.46!LHX2;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.77!TCF12;;chr6:99282592..99282616,+!p3@POU3F2!1.30!19.18!POU3F2;;chr6:99282438..99282457,+!p2@POU3F2!1.29!18.32!POU3F2;;chr13:72441074..72441172,-!p2@DACH1!1.28!18.03!DACH1;;chr15:37392724..37392757,-!p1@MEIS2!1.24!73.28!MEIS2;;chr14:73360799..73360817,-!p1@DPF3!1.24!56.67!DPF3;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.61!TFAP2C;;chr4:57547751..57547764,-!p6@HOPX!1.24!16.32!HOPX;;chr9:126774058..126774081,+!p3@LHX2!1.24!16.32!LHX2;;chr18:53068911..53068935,-!p4@TCF4!1.23!18.03!TCF4;;chr17:70117153..70117174,+!p1@SOX9!1.21!152.85!SOX9;;chr12:24102576..24102623,-!p2@SOX5!1.21!15.17!SOX5;;chr13:95364784..95364806,-!p1@SOX21!1.21!15.17!SOX21;;chr4:57522598..57522664,-!p3@HOPX!1.19!14.60!HOPX;;chr1:23696348..23696363,-!p4@ZNF436!1.18!16.03!ZNF436;;chr12:103351444..103351461,+!p1@ASCL1!1.18!14.03!ASCL1;;chr7:42276787..42276815,-!p1@GLI3!1.15!35.21!GLI3;;chr5:92918919..92918942,+!p1@NR2F1!1.14!56.96!NR2F1;;chr15:37392094..37392116,-!p6@MEIS2!1.13!15.46!MEIS2;;chr3:114173654..114173696,-!p12@ZBTB20!1.13!12.59!ZBTB20;;chr14:33403779..33403793,+!p6@NPAS3!1.13!12.59!NPAS3;;chr15:80696703..80696754,+!p1@ARNT2!1.12!16.32!ARNT2;;chr16:51185318..51185348,-!p2@SALL1!1.12!12.31!SALL1;;chr8:80679993..80680011,-!p1@HEY1!1.09!16.60!HEY1;;chr1:50889103..50889145,-!p1@DMRTA2!1.07!10.88!DMRTA2;;chr11:31832807..31832823,-!p4@PAX6!1.07!10.88!PAX6;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.07!10.88!POU3F3;;chr9:4300050..4300118,-!p1@GLIS3!1.06!68.41!GLIS3;;chr6:108487220..108487236,+!p2@NR2E1!1.06!10.59!NR2E1;;chr4:57547820..57547829,-!p8@HOPX!1.05!10.30!HOPX;;chr1:151032922..151032951,+!p2@MLLT11!1.04!16.89!MLLT11;;chr8:60031682..60031710,-!p2@TOX!1.04!16.32!TOX;;chr12:106976678..106976708,+!p2@RFX4!1.04!10.02!RFX4;;chr21:34442439..34442455,+!p1@OLIG1!1.03!9.73!OLIG1;;chr4:57522166..57522260,-!p2@HOPX!1.02!10.88!HOPX;;chr18:42260920..42260951,+!p4@SETBP1!1.02!9.45!SETBP1;;chr10:119302268..119302282,+!p4@EMX2!1.02!9.45!EMX2;;chr14:29236301..29236317,+!p5@FOXG1!1.01!9.16!FOXG1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.01!9.16!POU3F3;;chr2:5832493..5832507,+!p2@SOX11!1.01!9.16!SOX11;;chr12:24715376..24715432,-!p1@SOX5!0.99!11.16!SOX5;;chr11:31827535..31827565,-!p11@PAX6!0.99!8.87!PAX6;;chr2:16080659..16080685,+!p1@MYCN!0.99!8.87!MYCN;;chr8:77593474..77593612,+!p1@ZFHX4!0.98!36.92!ZFHX4;;chr2:239148671..239148686,-!p1@HES6!0.98!32.34!HES6;;chr8:86089417..86089440,+!p2@E2F5!0.98!17.17!E2F5;;chr3:114173720..114173794,-!p6@ZBTB20!0.98!8.59!ZBTB20;;chr3:25469815..25469866,+!p3@RARB!0.98!8.59!RARB;;chr5:176738887..176738934,-!p1@MXD3!0.97!56.96!MXD3;;chr9:14314131..14314147,-!p2@NFIB!0.97!48.09!NFIB;;chr7:42276822..42276895,-!p2@GLI3!0.97!25.76!GLI3;;chr8:60031762..60031803,-!p3@TOX!0.97!12.31!TOX;;chr7:42192092..42192108,-!p13@GLI3!0.95!8.01!GLI3;;chr21:34398234..34398250,+!p1@OLIG2!0.95!8.01!OLIG2;;chr3:21792682..21792720,-!p1@ZNF385D!0.95!8.01!ZNF385D;;chr1:23696308..23696339,-!p2@ZNF436!0.94!16.89!ZNF436;;chrX:84498989..84499003,+!p1@ZNF711!0.94!10.59!ZNF711;;chr7:42192043..42192057,-!p10@GLI3!0.94!7.73!GLI3;;chr13:100623375..100623425,-!p1@ZIC5!0.94!7.73!ZIC5;;chr8:60031809..60031835,-!p4@TOX!0.93!9.73!TOX;;chr11:31832687..31832704,-!p6@PAX6!0.93!7.44!PAX6;;chr3:27764190..27764208,-!p2@EOMES!0.93!7.44!EOMES;;chr4:57522513..57522548,-!p4@HOPX!0.93!7.44!HOPX;;chr3:25469724..25469773,+!p1@RARB!0.92!10.88!RARB;;chrX:84499081..84499115,+!p2@ZNF711!0.91!10.59!ZNF711;;chr1:42384532..42384603,-!p2@HIVEP3!0.91!7.16!HIVEP3;;chr6:99282570..99282591,+!p4@POU3F2!0.91!7.16!POU3F2;;chr12:106976774..106976788,+!p1@RFX4!0.91!7.16!RFX4;;chr7:20826504..20826526,-!p1@SP8!0.90!6.87!SP8;;chr16:52581025..52581072,-!p1@TOX3!0.90!6.87!TOX3;;chr18:42260840..42260860,+!p2@SETBP1!0.90!6.87!SETBP1;;chr3:114343768..114343822,-!p1@ZBTB20!0.89!30.63!ZBTB20;;chr14:33408072..33408114,+!p2@NPAS3!0.89!8.01!NPAS3;;chr9:77112244..77112262,+!p1@RORB!0.89!7.73!RORB;;chr8:60031619..60031676,-!p1@TOX!0.88!14.88!TOX;;chr1:170633348..170633399,+!p2@PRRX1!0.88!9.16!PRRX1;;chr1:164528687..164528711,+!p6@PBX1!0.88!7.73!PBX1;;chr10:118897911..118897974,-!p1@VAX1!0.88!6.58!VAX1;;chr9:14314566..14314618,-!p1@NFIB!0.87!81.29!NFIB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.86!6.30!PEG3;;chr18:42260861..42260882,+!p5@SETBP1!0.86!6.30!SETBP1;;chr10:119303078..119303169,+!p2@EMX2!0.86!6.30!EMX2;;chr13:100634031..100634045,+!p1@ZIC2!0.86!6.30!ZIC2;;chr14:33403860..33403874,+!p5@NPAS3!0.86!6.30!NPAS3;;chr3:181429641..181429650,+!p3@SOX2!0.86!6.30!SOX2;;chr2:25475120..25475176,-!p2@DNMT3A!0.85!8.30!DNMT3A;;chr4:57522674..57522699,-!p5@HOPX!0.85!6.01!HOPX;;chr16:51185573..51185593,-!p3@SALL1!0.85!6.01!SALL1;;chr19:38720294..38720348,-!p1@DPF1!0.84!7.44!DPF1;;chr5:92919100..92919135,+!p3@NR2F1!0.83!7.16!NR2F1;;chr6:108487245..108487256,+!p3@NR2E1!0.83!5.72!NR2E1;;chr6:99283040..99283063,+!p5@POU3F2!0.83!5.72!POU3F2;;chr20:30433396..30433414,-!p1@FOXS1!0.83!5.72!FOXS1;;chr11:16629261..16629284,-!p1@SOX6!0.83!5.72!SOX6;;chr11:31839453..31839462,-!p9@PAX6!0.83!5.72!PAX6;;chr14:57277178..57277203,-!p1@OTX2!0.83!5.72!OTX2;;chr1:151032860..151032918,+!p1@MLLT11!0.81!70.41!MLLT11;;chr13:95364761..95364780,-!p2@SOX21!0.81!5.44!SOX21;;chr3:147127177..147127194,+!p2@ZIC1!0.81!5.44!ZIC1;;chr2:172967621..172967637,-!p1@DLX2!0.80!15.17!DLX2;;chr8:86089369..86089408,+!p1@E2F5!0.80!15.17!E2F5;;chr5:178368186..178368238,+!p1@ZNF454!0.80!10.02!ZNF454;;chr15:37392576..37392589,-!p12@MEIS2!0.80!6.58!MEIS2;;chr9:3525867..3525902,-!p3@RFX3!0.79!19.18!RFX3;;chr2:121493425..121493474,+!p1@GLI2!0.79!12.02!GLI2;;chr1:91487013..91487070,-!p6@ZNF644!0.79!7.44!ZNF644;;chr4:146403912..146403972,+!p5@SMAD1!0.79!6.87!SMAD1;;chr8:60031934..60031986,-!p6@TOX!0.79!5.15!TOX;;chr1:170632477..170632506,+!p6@PRRX1!0.79!5.15!PRRX1;;chr14:33403930..33403943,+!p7@NPAS3!0.79!5.15!NPAS3;;chr9:14082760..14082775,-!p6@NFIB!0.78!8.59!NFIB;;chr11:31832610..31832639,-!p5@PAX6!0.77!4.87!PAX6;;chr15:80696666..80696700,+!p4@ARNT2!0.77!4.87!ARNT2;;chr3:147127142..147127168,+!p1@ZIC1!0.77!4.87!ZIC1;;chr20:55205791..55205817,+!p3@TFAP2C!0.77!4.87!TFAP2C;;chr5:124081979..124082021,-!p7@ZNF608!0.77!4.87!ZNF608;;chr6:99282461..99282472,+!p7@POU3F2!0.77!4.87!POU3F2;;chr9:14083467..14083483,-!p4@NFIB!0.76!12.59!NFIB;;chr1:164528616..164528660,+!p5@PBX1!0.76!10.30!PBX1;;chr8:80680024..80680046,-!p2@HEY1!0.76!5.44!HEY1;;chr5:92918894..92918912,+!p2@NR2F1!0.75!16.60!NR2F1;;chr14:21994337..21994442,-!p1@SALL2!0.75!13.74!SALL2;;chr2:121493492..121493537,+!p2@GLI2!0.75!8.01!GLI2;;chr3:114173558..114173571,-!p19@ZBTB20!0.75!4.58!ZBTB20;;chr16:1031762..1031781,+!p1@SOX8!0.75!4.58!SOX8;;chr19:58545454..58545498,+!p1@ZSCAN1!0.75!4.58!ZSCAN1;;chr20:55205825..55205847,+!p2@TFAP2C!0.75!4.58!TFAP2C;;chr12:24103844..24103880,-!p3@SOX5!0.75!4.58!SOX5;;chr1:164528410..164528428,+!p1@PBX1!0.74!37.21!PBX1;;chr20:45142154..45142227,-!p1@ZNF334!0.74!9.45!ZNF334;;chr15:37392703..37392717,-!p8@MEIS2!0.74!6.58!MEIS2;;chr1:61547781..61547809,+!p5@NFIA!0.73!9.45!NFIA;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.30!NFIX;;chr19:22034809..22034878,-!p2@ZNF43!0.72!16.32!ZNF43;;chrX:101186981..101187030,-!p1@ZMAT1!0.72!15.17!ZMAT1;;chr6:28411241..28411284,-!p1@ZSCAN23!0.72!14.60!ZSCAN23;;chr19:22817119..22817145,+!p1@ZNF492!0.72!7.44!ZNF492;;chr1:164528911..164528940,+!p7@PBX1!0.72!6.58!PBX1;;chr1:151032957..151032968,+!p7@MLLT11!0.72!4.29!MLLT11;;chr19:13135582..13135600,+!p3@NFIX!0.72!4.29!NFIX;;chr9:126774091..126774098,+!p4@LHX2!0.72!4.29!LHX2;;chr4:113437332..113437337,-!p1@NEUROG2!0.72!4.29!NEUROG2;;chr5:134871645..134871660,-!p1@NEUROG1!0.72!4.29!NEUROG1;;chr10:119302645..119302712,+!p3@EMX2!0.72!4.29!EMX2;;chr1:23857325..23857416,-!p2@E2F2!0.71!4.87!E2F2;;chr15:37392534..37392562,-!p10@MEIS2!0.71!4.58!MEIS2;;chr15:37392616..37392638,-!p2@MEIS2!0.70!13.74!MEIS2;;chr18:56532100..56532130,+!p1@ZNF532!0.70!8.01!ZNF532;;chr1:170632285..170632309,+!p1@PRRX1!0.70!4.58!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.70!4.01!KDM5D;;chr13:112721457..112721482,+!p1@SOX1!0.70!4.01!SOX1;;chr2:166326200..166326216,+!p1@CSRNP3!0.69!6.01!CSRNP3;;chr7:148581327..148581347,-!p2@EZH2!0.68!14.60!EZH2;;chr1:164528445..164528459,+!p2@PBX1!0.68!13.17!PBX1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.68!6.01!ZNF853;;chr12:29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|expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.34!215.82!SOX2;;chr4:57547454..57547469,-!p1@HOPX!2.09!120.79!HOPX;;chr14:29234581..29234601,+!p2@FOXG1!2.08!118.22!FOXG1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.01!100.47!POU3F3;;chr14:33403881..33403924,+!p1@NPAS3!2.00!99.61!NPAS3;;chr3:181429741..181429767,+!p2@SOX2!1.94!86.16!SOX2;;chr14:29235961..29236008,+!p1@FOXG1!1.90!78.14!FOXG1;;chrX:25034067..25034088,-!p1@ARX!1.87!72.99!ARX;;chr9:126774018..126774055,+!p1@LHX2!1.73!52.09!LHX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.65!43.79!POU3F3;;chr14:29236269..29236285,+!p3@FOXG1!1.60!38.64!FOXG1;;chr6:19837592..19837621,+!p1@ID4!1.58!216.39!ID4;;chr7:100065686..100065701,-!p2@TSC22D4!1.58!36.92!TSC22D4;;chr1:2985760..2985774,+!p1@PRDM16!1.53!32.63!PRDM16;;chr11:31839488..31839515,-!p3@PAX6!1.50!30.34!PAX6;;chr13:72441315..72441454,-!p1@DACH1!1.49!58.11!DACH1;;chr11:31832658..31832681,-!p1@PAX6!1.48!28.91!PAX6;;chr19:13134772..13134822,+!p2@NFIX!1.46!40.07!NFIX;;chr11:31832862..31832884,-!p2@PAX6!1.46!28.05!PAX6;;chr6:108487289..108487302,+!p1@NR2E1!1.44!26.62!NR2E1;;chrX:139587228..139587234,-!p1@SOX3!1.44!26.33!SOX3;;chr16:51185172..51185197,-!p1@SALL1!1.43!26.05!SALL1;;chr6:45296048..45296082,+!p1@RUNX2!1.41!28.34!RUNX2;;chr6:99282475..99282501,+!p1@POU3F2!1.38!23.19!POU3F2;;chr2:63277948..63277974,+!p1@OTX1!1.37!22.33!OTX1;;chr10:119302232..119302265,+!p1@EMX2!1.35!21.18!EMX2;;chr20:20348740..20348757,+!p1@INSM1!1.34!20.90!INSM1;;chrX:82763292..82763317,+!p1@POU3F4!1.34!20.90!POU3F4;;chr2:5832508..5832524,+!p1@SOX11!1.33!20.61!SOX11;;chr14:33403648..33403710,+!p3@NPAS3!1.31!19.46!NPAS3;;chr9:126773880..126773895,+!p2@LHX2!1.31!19.46!LHX2;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.77!TCF12;;chr6:99282592..99282616,+!p3@POU3F2!1.30!19.18!POU3F2;;chr6:99282438..99282457,+!p2@POU3F2!1.29!18.32!POU3F2;;chr13:72441074..72441172,-!p2@DACH1!1.28!18.03!DACH1;;chr15:37392724..37392757,-!p1@MEIS2!1.24!73.28!MEIS2;;chr14:73360799..73360817,-!p1@DPF3!1.24!56.67!DPF3;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.61!TFAP2C;;chr4:57547751..57547764,-!p6@HOPX!1.24!16.32!HOPX;;chr9:126774058..126774081,+!p3@LHX2!1.24!16.32!LHX2;;chr18:53068911..53068935,-!p4@TCF4!1.23!18.03!TCF4;;chr17:70117153..70117174,+!p1@SOX9!1.21!152.85!SOX9;;chr12:24102576..24102623,-!p2@SOX5!1.21!15.17!SOX5;;chr13:95364784..95364806,-!p1@SOX21!1.21!15.17!SOX21;;chr4:57522598..57522664,-!p3@HOPX!1.19!14.60!HOPX;;chr1:23696348..23696363,-!p4@ZNF436!1.18!16.03!ZNF436;;chr12:103351444..103351461,+!p1@ASCL1!1.18!14.03!ASCL1;;chr7:42276787..42276815,-!p1@GLI3!1.15!35.21!GLI3;;chr5:92918919..92918942,+!p1@NR2F1!1.14!56.96!NR2F1;;chr15:37392094..37392116,-!p6@MEIS2!1.13!15.46!MEIS2;;chr3:114173654..114173696,-!p12@ZBTB20!1.13!12.59!ZBTB20;;chr14:33403779..33403793,+!p6@NPAS3!1.13!12.59!NPAS3;;chr15:80696703..80696754,+!p1@ARNT2!1.12!16.32!ARNT2;;chr16:51185318..51185348,-!p2@SALL1!1.12!12.31!SALL1;;chr8:80679993..80680011,-!p1@HEY1!1.09!16.60!HEY1;;chr1:50889103..50889145,-!p1@DMRTA2!1.07!10.88!DMRTA2;;chr11:31832807..31832823,-!p4@PAX6!1.07!10.88!PAX6;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.07!10.88!POU3F3;;chr9:4300050..4300118,-!p1@GLIS3!1.06!68.41!GLIS3;;chr6:108487220..108487236,+!p2@NR2E1!1.06!10.59!NR2E1;;chr4:57547820..57547829,-!p8@HOPX!1.05!10.30!HOPX;;chr1:151032922..151032951,+!p2@MLLT11!1.04!16.89!MLLT11;;chr8:60031682..60031710,-!p2@TOX!1.04!16.32!TOX;;chr12:106976678..106976708,+!p2@RFX4!1.04!10.02!RFX4;;chr21:34442439..34442455,+!p1@OLIG1!1.03!9.73!OLIG1;;chr4:57522166..57522260,-!p2@HOPX!1.02!10.88!HOPX;;chr18:42260920..42260951,+!p4@SETBP1!1.02!9.45!SETBP1;;chr10:119302268..119302282,+!p4@EMX2!1.02!9.45!EMX2;;chr14:29236301..29236317,+!p5@FOXG1!1.01!9.16!FOXG1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.01!9.16!POU3F3;;chr2:5832493..5832507,+!p2@SOX11!1.01!9.16!SOX11;;chr12:24715376..24715432,-!p1@SOX5!0.99!11.16!SOX5;;chr11:31827535..31827565,-!p11@PAX6!0.99!8.87!PAX6;;chr2:16080659..16080685,+!p1@MYCN!0.99!8.87!MYCN;;chr8:77593474..77593612,+!p1@ZFHX4!0.98!36.92!ZFHX4;;chr2:239148671..239148686,-!p1@HES6!0.98!32.34!HES6;;chr8:86089417..86089440,+!p2@E2F5!0.98!17.17!E2F5;;chr3:114173720..114173794,-!p6@ZBTB20!0.98!8.59!ZBTB20;;chr3:25469815..25469866,+!p3@RARB!0.98!8.59!RARB;;chr5:176738887..176738934,-!p1@MXD3!0.97!56.96!MXD3;;chr9:14314131..14314147,-!p2@NFIB!0.97!48.09!NFIB;;chr7:42276822..42276895,-!p2@GLI3!0.97!25.76!GLI3;;chr8:60031762..60031803,-!p3@TOX!0.97!12.31!TOX;;chr7:42192092..42192108,-!p13@GLI3!0.95!8.01!GLI3;;chr21:34398234..34398250,+!p1@OLIG2!0.95!8.01!OLIG2;;chr3:21792682..21792720,-!p1@ZNF385D!0.95!8.01!ZNF385D;;chr1:23696308..23696339,-!p2@ZNF436!0.94!16.89!ZNF436;;chrX:84498989..84499003,+!p1@ZNF711!0.94!10.59!ZNF711;;chr7:42192043..42192057,-!p10@GLI3!0.94!7.73!GLI3;;chr13:100623375..100623425,-!p1@ZIC5!0.94!7.73!ZIC5;;chr8:60031809..60031835,-!p4@TOX!0.93!9.73!TOX;;chr11:31832687..31832704,-!p6@PAX6!0.93!7.44!PAX6;;chr3:27764190..27764208,-!p2@EOMES!0.93!7.44!EOMES;;chr4:57522513..57522548,-!p4@HOPX!0.93!7.44!HOPX;;chr3:25469724..25469773,+!p1@RARB!0.92!10.88!RARB;;chrX:84499081..84499115,+!p2@ZNF711!0.91!10.59!ZNF711;;chr1:42384532..42384603,-!p2@HIVEP3!0.91!7.16!HIVEP3;;chr6:99282570..99282591,+!p4@POU3F2!0.91!7.16!POU3F2;;chr12:106976774..106976788,+!p1@RFX4!0.91!7.16!RFX4;;chr7:20826504..20826526,-!p1@SP8!0.90!6.87!SP8;;chr16:52581025..52581072,-!p1@TOX3!0.90!6.87!TOX3;;chr18:42260840..42260860,+!p2@SETBP1!0.90!6.87!SETBP1;;chr3:114343768..114343822,-!p1@ZBTB20!0.89!30.63!ZBTB20;;chr14:33408072..33408114,+!p2@NPAS3!0.89!8.01!NPAS3;;chr9:77112244..77112262,+!p1@RORB!0.89!7.73!RORB;;chr8:60031619..60031676,-!p1@TOX!0.88!14.88!TOX;;chr1:170633348..170633399,+!p2@PRRX1!0.88!9.16!PRRX1;;chr1:164528687..164528711,+!p6@PBX1!0.88!7.73!PBX1;;chr10:118897911..118897974,-!p1@VAX1!0.88!6.58!VAX1;;chr9:14314566..14314618,-!p1@NFIB!0.87!81.29!NFIB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.86!6.30!PEG3;;chr18:42260861..42260882,+!p5@SETBP1!0.86!6.30!SETBP1;;chr10:119303078..119303169,+!p2@EMX2!0.86!6.30!EMX2;;chr13:100634031..100634045,+!p1@ZIC2!0.86!6.30!ZIC2;;chr14:33403860..33403874,+!p5@NPAS3!0.86!6.30!NPAS3;;chr3:181429641..181429650,+!p3@SOX2!0.86!6.30!SOX2;;chr2:25475120..25475176,-!p2@DNMT3A!0.85!8.30!DNMT3A;;chr4:57522674..57522699,-!p5@HOPX!0.85!6.01!HOPX;;chr16:51185573..51185593,-!p3@SALL1!0.85!6.01!SALL1;;chr19:38720294..38720348,-!p1@DPF1!0.84!7.44!DPF1;;chr5:92919100..92919135,+!p3@NR2F1!0.83!7.16!NR2F1;;chr6:108487245..108487256,+!p3@NR2E1!0.83!5.72!NR2E1;;chr6:99283040..99283063,+!p5@POU3F2!0.83!5.72!POU3F2;;chr20:30433396..30433414,-!p1@FOXS1!0.83!5.72!FOXS1;;chr11:16629261..16629284,-!p1@SOX6!0.83!5.72!SOX6;;chr11:31839453..31839462,-!p9@PAX6!0.83!5.72!PAX6;;chr14:57277178..57277203,-!p1@OTX2!0.83!5.72!OTX2;;chr1:151032860..151032918,+!p1@MLLT11!0.81!70.41!MLLT11;;chr13:95364761..95364780,-!p2@SOX21!0.81!5.44!SOX21;;chr3:147127177..147127194,+!p2@ZIC1!0.81!5.44!ZIC1;;chr2:172967621..172967637,-!p1@DLX2!0.80!15.17!DLX2;;chr8:86089369..86089408,+!p1@E2F5!0.80!15.17!E2F5;;chr5:178368186..178368238,+!p1@ZNF454!0.80!10.02!ZNF454;;chr15:37392576..37392589,-!p12@MEIS2!0.80!6.58!MEIS2;;chr9:3525867..3525902,-!p3@RFX3!0.79!19.18!RFX3;;chr2:121493425..121493474,+!p1@GLI2!0.79!12.02!GLI2;;chr1:91487013..91487070,-!p6@ZNF644!0.79!7.44!ZNF644;;chr4:146403912..146403972,+!p5@SMAD1!0.79!6.87!SMAD1;;chr8:60031934..60031986,-!p6@TOX!0.79!5.15!TOX;;chr1:170632477..170632506,+!p6@PRRX1!0.79!5.15!PRRX1;;chr14:33403930..33403943,+!p7@NPAS3!0.79!5.15!NPAS3;;chr9:14082760..14082775,-!p6@NFIB!0.78!8.59!NFIB;;chr11:31832610..31832639,-!p5@PAX6!0.77!4.87!PAX6;;chr15:80696666..80696700,+!p4@ARNT2!0.77!4.87!ARNT2;;chr3:147127142..147127168,+!p1@ZIC1!0.77!4.87!ZIC1;;chr20:55205791..55205817,+!p3@TFAP2C!0.77!4.87!TFAP2C;;chr5:124081979..124082021,-!p7@ZNF608!0.77!4.87!ZNF608;;chr6:99282461..99282472,+!p7@POU3F2!0.77!4.87!POU3F2;;chr9:14083467..14083483,-!p4@NFIB!0.76!12.59!NFIB;;chr1:164528616..164528660,+!p5@PBX1!0.76!10.30!PBX1;;chr8:80680024..80680046,-!p2@HEY1!0.76!5.44!HEY1;;chr5:92918894..92918912,+!p2@NR2F1!0.75!16.60!NR2F1;;chr14:21994337..21994442,-!p1@SALL2!0.75!13.74!SALL2;;chr2:121493492..121493537,+!p2@GLI2!0.75!8.01!GLI2;;chr3:114173558..114173571,-!p19@ZBTB20!0.75!4.58!ZBTB20;;chr16:1031762..1031781,+!p1@SOX8!0.75!4.58!SOX8;;chr19:58545454..58545498,+!p1@ZSCAN1!0.75!4.58!ZSCAN1;;chr20:55205825..55205847,+!p2@TFAP2C!0.75!4.58!TFAP2C;;chr12:24103844..24103880,-!p3@SOX5!0.75!4.58!SOX5;;chr1:164528410..164528428,+!p1@PBX1!0.74!37.21!PBX1;;chr20:45142154..45142227,-!p1@ZNF334!0.74!9.45!ZNF334;;chr15:37392703..37392717,-!p8@MEIS2!0.74!6.58!MEIS2;;chr1:61547781..61547809,+!p5@NFIA!0.73!9.45!NFIA;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.30!NFIX;;chr19:22034809..22034878,-!p2@ZNF43!0.72!16.32!ZNF43;;chrX:101186981..101187030,-!p1@ZMAT1!0.72!15.17!ZMAT1;;chr6:28411241..28411284,-!p1@ZSCAN23!0.72!14.60!ZSCAN23;;chr19:22817119..22817145,+!p1@ZNF492!0.72!7.44!ZNF492;;chr1:164528911..164528940,+!p7@PBX1!0.72!6.58!PBX1;;chr1:151032957..151032968,+!p7@MLLT11!0.72!4.29!MLLT11;;chr19:13135582..13135600,+!p3@NFIX!0.72!4.29!NFIX;;chr9:126774091..126774098,+!p4@LHX2!0.72!4.29!LHX2;;chr4:113437332..113437337,-!p1@NEUROG2!0.72!4.29!NEUROG2;;chr5:134871645..134871660,-!p1@NEUROG1!0.72!4.29!NEUROG1;;chr10:119302645..119302712,+!p3@EMX2!0.72!4.29!EMX2;;chr1:23857325..23857416,-!p2@E2F2!0.71!4.87!E2F2;;chr15:37392534..37392562,-!p10@MEIS2!0.71!4.58!MEIS2;;chr15:37392616..37392638,-!p2@MEIS2!0.70!13.74!MEIS2;;chr18:56532100..56532130,+!p1@ZNF532!0.70!8.01!ZNF532;;chr1:170632285..170632309,+!p1@PRRX1!0.70!4.58!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.70!4.01!KDM5D;;chr13:112721457..112721482,+!p1@SOX1!0.70!4.01!SOX1;;chr2:166326200..166326216,+!p1@CSRNP3!0.69!6.01!CSRNP3;;chr7:148581327..148581347,-!p2@EZH2!0.68!14.60!EZH2;;chr1:164528445..164528459,+!p2@PBX1!0.68!13.17!PBX1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.68!6.01!ZNF853;;chr12:29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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000127;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002605;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
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|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor1.CNhs10864.11235-116D2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor1.CNhs10864.11235-116D2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor1.CNhs10864.11235-116D2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor1.CNhs10864.11235-116D2.hg38.nobarcode.ctss.bed.gz
|id=FF:11235-116D2
|id=FF:11235-116D2
|is_a=EFO:0002091;;FF:0000194
|is_a=EFO:0002091;;FF:0000194
|is_obsolete=
|is_obsolete=
|library_id=CNhs10864
|library_id_phase_based=2:CNhs10864
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11235
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.TTAGGC.11235
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11235
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.TTAGGC.11235
|name=Astrocyte - cerebral cortex, donor1
|name=Astrocyte - cerebral cortex, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
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|profile_hcage=CNhs10864,LSID702,release008,COMPLETED
|profile_hcage=CNhs10864,LSID702,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|rna_catalog_number=SC1805
Line 60: Line 82:
|rna_tube_id=116D2
|rna_tube_id=116D2
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10006.TTAGGC
|sample_age=fetal
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 82: Line 106:
|top_motifs=OCT4_SOX2{dimer}:3.00728391494;GFI1:2.98000383468;NKX2-3_NKX2-5:2.49009723753;SOX2:2.48516668579;PAX6:2.41493266206;CDC5L:2.17636747453;NANOG:2.10718091179;RBPJ:2.08893897741;TFDP1:1.81224890359;NFY{A,B,C}:1.78631669692;NKX6-1,2:1.74588830811;LHX3,4:1.71876735487;PAX1,9:1.67546395039;SOX{8,9,10}:1.66698048183;POU3F1..4:1.59102743353;ZIC1..3:1.58918029555;POU1F1:1.57497444196;POU5F1:1.57405120592;SOX17:1.5601681264;E2F1..5:1.55392783764;NKX2-1,4:1.53405931559;PBX1:1.52802221386;MZF1:1.45039742258;STAT1,3:1.390220453;LEF1_TCF7_TCF7L1,2:1.37363309567;PRRX1,2:1.3665200003;FOXP1:1.36232733558;CDX1,2,4:1.30674503217;ZNF384:1.30278067999;GCM1,2:1.23540418923;PAX5:1.21794012184;T:1.19559011127;MTE{core}:1.16983532769;ALX1:1.09277264813;GFI1B:1.07025831826;DBP:1.03100359677;HOX{A4,D4}:0.94882649694;CUX2:0.932686245361;NRF1:0.916935681789;HIC1:0.883126215387;ZNF143:0.880624054728;RFX1:0.865686005748;XCPE1{core}:0.859540287974;ELK1,4_GABP{A,B1}:0.847744659469;EVI1:0.841392065602;NR6A1:0.840079127519;NKX3-2:0.834856280096;BREu{core}:0.834667544754;ZFP161:0.820583795883;VSX1,2:0.809003696877;SOX5:0.798999338086;GTF2A1,2:0.796049301457;MYB:0.750513898623;GTF2I:0.725998150935;MAZ:0.717459539186;JUN:0.709676273575;HBP1_HMGB_SSRP1_UBTF:0.688017710929;NFIX:0.675637817161;EGR1..3:0.671655162736;PATZ1:0.651683023462;TLX1..3_NFIC{dimer}:0.649179021247;CRX:0.63178754778;ONECUT1,2:0.625831876565;ADNP_IRX_SIX_ZHX:0.602902836226;NR1H4:0.601555155299;SP1:0.583520030196;HMGA1,2:0.575729370506;TFAP2B:0.549781963653;PITX1..3:0.525881229736;POU2F1..3:0.511505947173;PAX4:0.509882160082;PRDM1:0.505050876925;TOPORS:0.491886955236;MYBL2:0.488992020429;NHLH1,2:0.488224031839;RREB1:0.447543590142;KLF4:0.446241932001;GATA4:0.439409428124;TEF:0.405152443977;FOXM1:0.399368118512;ZBTB6:0.395866820974;LMO2:0.366374637738;HSF1,2:0.361881065195;NKX2-2,8:0.336406726999;FOXD3:0.332123593598;EBF1:0.330351646472;NR3C1:0.276827647292;TEAD1:0.249041085191;FOXN1:0.241350106645;YY1:0.224064645591;PDX1:0.189012746955;EP300:0.180846633147;TGIF1:0.171638392856;FOXP3:0.171104459257;SMAD1..7,9:0.161960119956;IKZF2:0.141218844485;MED-1{core}:0.125046057874;PAX8:0.114067260984;SRF:0.110638655343;AR:0.0913798392863;TFAP2{A,C}:0.0833101468116;STAT2,4,6:0.0774218569438;TBX4,5:0.0754853694545;UFEwm:0.063389017567;ESRRA:0.0595163758284;ZBTB16:0.049276397382;STAT5{A,B}:0.0399055550346;ATF2:0.00882814218442;GZF1:0.00317490231416;TBP:-0.0146016673661;DMAP1_NCOR{1,2}_SMARC:-0.0308969611206;HNF4A_NR2F1,2:-0.0394530367507;HNF1A:-0.0452350394908;RFX2..5_RFXANK_RFXAP:-0.0507587062591;AIRE:-0.0557786694998;ATF4:-0.0557908401021;NFE2L2:-0.0632470342795;MYFfamily:-0.0711640574051;HOXA9_MEIS1:-0.0742618169104;CREB1:-0.0827090687734;POU6F1:-0.0934338294259;TFAP4:-0.103082512196;NFATC1..3:-0.131713346415;HMX1:-0.15658481641;MEF2{A,B,C,D}:-0.160099132491;HAND1,2:-0.16113933754;PAX3,7:-0.161209738495;FOXL1:-0.177270108613;FOXA2:-0.194423189518;NANOG{mouse}:-0.222899080286;FOS_FOS{B,L1}_JUN{B,D}:-0.26355070331;RXR{A,B,G}:-0.282407299522;REST:-0.286507163685;EN1,2:-0.299357940093;TP53:-0.310165514093;MTF1:-0.317472990868;IRF1,2:-0.322963799065;BACH2:-0.324043118266;TFCP2:-0.351375344582;HOX{A5,B5}:-0.390807649811;NFIL3:-0.396735971446;AHR_ARNT_ARNT2:-0.4221689882;NKX3-1:-0.430987143029;IKZF1:-0.431887072363;BPTF:-0.432939591588;FOSL2:-0.44318905814;HOX{A6,A7,B6,B7}:-0.45291752991;SPIB:-0.453395744233;NFE2:-0.458757617808;GATA6:-0.467630978288;ALX4:-0.468566272519;RUNX1..3:-0.470547485146;NFKB1_REL_RELA:-0.501615888904;IRF7:-0.502380226448;FOX{D1,D2}:-0.50681223769;MAFB:-0.513431075022;RORA:-0.530618456216;ZNF148:-0.535010372562;FOXO1,3,4:-0.543751599884;MYOD1:-0.547737321554;NFE2L1:-0.579894230157;ELF1,2,4:-0.583464426304;FOX{F1,F2,J1}:-0.592988327577;SNAI1..3:-0.613801760064;SREBF1,2:-0.641338182782;XBP1:-0.671322811142;SPI1:-0.703618864399;HLF:-0.748067111629;ESR1:-0.759624705119;SPZ1:-0.762341820515;ZEB1:-0.794258268979;PAX2:-0.796985341802;ARID5B:-0.807839444475;ZNF423:-0.818092576617;FOXQ1:-0.824092859062;ATF5_CREB3:-0.832160624752;NR5A1,2:-0.891213377022;CEBPA,B_DDIT3:-0.919565882237;TLX2:-0.927912094818;ETS1,2:-0.93084463918;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.0402825744;FOX{I1,J2}:-1.09286804406;ZNF238:-1.11898926456;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.12117018956;TAL1_TCF{3,4,12}:-1.12755324838;HES1:-1.28880405325;RXRA_VDR{dimer}:-1.32891760336;bHLH_family:-1.33852629312;ATF6:-1.34340946961;PPARG:-1.37770426432;GLI1..3:-1.42143333861;HIF1A:-1.43933966992
|top_motifs=OCT4_SOX2{dimer}:3.00728391494;GFI1:2.98000383468;NKX2-3_NKX2-5:2.49009723753;SOX2:2.48516668579;PAX6:2.41493266206;CDC5L:2.17636747453;NANOG:2.10718091179;RBPJ:2.08893897741;TFDP1:1.81224890359;NFY{A,B,C}:1.78631669692;NKX6-1,2:1.74588830811;LHX3,4:1.71876735487;PAX1,9:1.67546395039;SOX{8,9,10}:1.66698048183;POU3F1..4:1.59102743353;ZIC1..3:1.58918029555;POU1F1:1.57497444196;POU5F1:1.57405120592;SOX17:1.5601681264;E2F1..5:1.55392783764;NKX2-1,4:1.53405931559;PBX1:1.52802221386;MZF1:1.45039742258;STAT1,3:1.390220453;LEF1_TCF7_TCF7L1,2:1.37363309567;PRRX1,2:1.3665200003;FOXP1:1.36232733558;CDX1,2,4:1.30674503217;ZNF384:1.30278067999;GCM1,2:1.23540418923;PAX5:1.21794012184;T:1.19559011127;MTE{core}:1.16983532769;ALX1:1.09277264813;GFI1B:1.07025831826;DBP:1.03100359677;HOX{A4,D4}:0.94882649694;CUX2:0.932686245361;NRF1:0.916935681789;HIC1:0.883126215387;ZNF143:0.880624054728;RFX1:0.865686005748;XCPE1{core}:0.859540287974;ELK1,4_GABP{A,B1}:0.847744659469;EVI1:0.841392065602;NR6A1:0.840079127519;NKX3-2:0.834856280096;BREu{core}:0.834667544754;ZFP161:0.820583795883;VSX1,2:0.809003696877;SOX5:0.798999338086;GTF2A1,2:0.796049301457;MYB:0.750513898623;GTF2I:0.725998150935;MAZ:0.717459539186;JUN:0.709676273575;HBP1_HMGB_SSRP1_UBTF:0.688017710929;NFIX:0.675637817161;EGR1..3:0.671655162736;PATZ1:0.651683023462;TLX1..3_NFIC{dimer}:0.649179021247;CRX:0.63178754778;ONECUT1,2:0.625831876565;ADNP_IRX_SIX_ZHX:0.602902836226;NR1H4:0.601555155299;SP1:0.583520030196;HMGA1,2:0.575729370506;TFAP2B:0.549781963653;PITX1..3:0.525881229736;POU2F1..3:0.511505947173;PAX4:0.509882160082;PRDM1:0.505050876925;TOPORS:0.491886955236;MYBL2:0.488992020429;NHLH1,2:0.488224031839;RREB1:0.447543590142;KLF4:0.446241932001;GATA4:0.439409428124;TEF:0.405152443977;FOXM1:0.399368118512;ZBTB6:0.395866820974;LMO2:0.366374637738;HSF1,2:0.361881065195;NKX2-2,8:0.336406726999;FOXD3:0.332123593598;EBF1:0.330351646472;NR3C1:0.276827647292;TEAD1:0.249041085191;FOXN1:0.241350106645;YY1:0.224064645591;PDX1:0.189012746955;EP300:0.180846633147;TGIF1:0.171638392856;FOXP3:0.171104459257;SMAD1..7,9:0.161960119956;IKZF2:0.141218844485;MED-1{core}:0.125046057874;PAX8:0.114067260984;SRF:0.110638655343;AR:0.0913798392863;TFAP2{A,C}:0.0833101468116;STAT2,4,6:0.0774218569438;TBX4,5:0.0754853694545;UFEwm:0.063389017567;ESRRA:0.0595163758284;ZBTB16:0.049276397382;STAT5{A,B}:0.0399055550346;ATF2:0.00882814218442;GZF1:0.00317490231416;TBP:-0.0146016673661;DMAP1_NCOR{1,2}_SMARC:-0.0308969611206;HNF4A_NR2F1,2:-0.0394530367507;HNF1A:-0.0452350394908;RFX2..5_RFXANK_RFXAP:-0.0507587062591;AIRE:-0.0557786694998;ATF4:-0.0557908401021;NFE2L2:-0.0632470342795;MYFfamily:-0.0711640574051;HOXA9_MEIS1:-0.0742618169104;CREB1:-0.0827090687734;POU6F1:-0.0934338294259;TFAP4:-0.103082512196;NFATC1..3:-0.131713346415;HMX1:-0.15658481641;MEF2{A,B,C,D}:-0.160099132491;HAND1,2:-0.16113933754;PAX3,7:-0.161209738495;FOXL1:-0.177270108613;FOXA2:-0.194423189518;NANOG{mouse}:-0.222899080286;FOS_FOS{B,L1}_JUN{B,D}:-0.26355070331;RXR{A,B,G}:-0.282407299522;REST:-0.286507163685;EN1,2:-0.299357940093;TP53:-0.310165514093;MTF1:-0.317472990868;IRF1,2:-0.322963799065;BACH2:-0.324043118266;TFCP2:-0.351375344582;HOX{A5,B5}:-0.390807649811;NFIL3:-0.396735971446;AHR_ARNT_ARNT2:-0.4221689882;NKX3-1:-0.430987143029;IKZF1:-0.431887072363;BPTF:-0.432939591588;FOSL2:-0.44318905814;HOX{A6,A7,B6,B7}:-0.45291752991;SPIB:-0.453395744233;NFE2:-0.458757617808;GATA6:-0.467630978288;ALX4:-0.468566272519;RUNX1..3:-0.470547485146;NFKB1_REL_RELA:-0.501615888904;IRF7:-0.502380226448;FOX{D1,D2}:-0.50681223769;MAFB:-0.513431075022;RORA:-0.530618456216;ZNF148:-0.535010372562;FOXO1,3,4:-0.543751599884;MYOD1:-0.547737321554;NFE2L1:-0.579894230157;ELF1,2,4:-0.583464426304;FOX{F1,F2,J1}:-0.592988327577;SNAI1..3:-0.613801760064;SREBF1,2:-0.641338182782;XBP1:-0.671322811142;SPI1:-0.703618864399;HLF:-0.748067111629;ESR1:-0.759624705119;SPZ1:-0.762341820515;ZEB1:-0.794258268979;PAX2:-0.796985341802;ARID5B:-0.807839444475;ZNF423:-0.818092576617;FOXQ1:-0.824092859062;ATF5_CREB3:-0.832160624752;NR5A1,2:-0.891213377022;CEBPA,B_DDIT3:-0.919565882237;TLX2:-0.927912094818;ETS1,2:-0.93084463918;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.0402825744;FOX{I1,J2}:-1.09286804406;ZNF238:-1.11898926456;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.12117018956;TAL1_TCF{3,4,12}:-1.12755324838;HES1:-1.28880405325;RXRA_VDR{dimer}:-1.32891760336;bHLH_family:-1.33852629312;ATF6:-1.34340946961;PPARG:-1.37770426432;GLI1..3:-1.42143333861;HIF1A:-1.43933966992
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11235-116D2;search_select_hide=table117:FF:11235-116D2
}}
}}

Latest revision as of 16:26, 3 June 2020

Name:Astrocyte - cerebral cortex, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10864
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecerebral cortex
dev stagefetus
sexunknown
agefetal
cell typeastrocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1086
catalog numberSC1805
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004792
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10864 CAGE DRX008115 DRR008987
Accession ID Hg19

Library idBAMCTSS
CNhs10864 DRZ000412 DRZ001797
Accession ID Hg38

Library idBAMCTSS
CNhs10864 DRZ011762 DRZ013147
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004792
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.TTAGGC sRNA-Seq DRX037070 DRR041436
Accession ID Hg19

Library idBAMCTSS
SRhi10006.TTAGGC DRZ007078


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0867
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.606
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0071
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.225
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.177
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.109
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.158
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.636
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0145
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.013
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.488
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.386
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.109
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.109
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.109
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10864

Jaspar motifP-value
MA0002.25.34034e-4
MA0003.10.0724
MA0004.10.135
MA0006.10.84
MA0007.10.283
MA0009.10.323
MA0014.10.692
MA0017.10.00203
MA0018.20.668
MA0019.10.717
MA0024.19.29176e-6
MA0025.10.189
MA0027.10.546
MA0028.10.354
MA0029.10.262
MA0030.10.288
MA0031.10.0468
MA0035.20.0295
MA0038.13.96053e-7
MA0039.20.524
MA0040.10.0563
MA0041.10.339
MA0042.10.367
MA0043.10.673
MA0046.10.468
MA0047.22.47978e-4
MA0048.10.53
MA0050.10.0449
MA0051.10.172
MA0052.10.029
MA0055.10.511
MA0057.10.26
MA0058.10.0936
MA0059.10.0625
MA0060.13.15009e-13
MA0061.10.00779
MA0062.20.671
MA0065.27.38446e-4
MA0066.10.0707
MA0067.10.493
MA0068.15.98816e-6
MA0069.10.866
MA0070.10.234
MA0071.10.107
MA0072.10.331
MA0073.10.776
MA0074.10.254
MA0076.10.161
MA0077.10.065
MA0078.10.663
MA0079.20.572
MA0080.27.46339e-14
MA0081.10.072
MA0083.10.882
MA0084.10.741
MA0087.10.819
MA0088.10.416
MA0090.10.4
MA0091.10.0133
MA0092.10.427
MA0093.10.159
MA0099.21.32257e-8
MA0100.10.271
MA0101.10.0448
MA0102.20.0216
MA0103.10.0236
MA0104.20.253
MA0105.13.25758e-4
MA0106.10.105
MA0107.10.0224
MA0108.20.375
MA0111.10.704
MA0112.28.13373e-5
MA0113.10.19
MA0114.10.0374
MA0115.10.614
MA0116.10.00202
MA0117.10.891
MA0119.10.287
MA0122.10.852
MA0124.10.106
MA0125.10.0036
MA0131.10.475
MA0135.10.675
MA0136.19.97685e-13
MA0137.20.652
MA0138.20.2
MA0139.10.278
MA0140.10.0278
MA0141.10.0256
MA0142.10.00439
MA0143.10.0158
MA0144.10.0961
MA0145.10.229
MA0146.10.0403
MA0147.10.218
MA0148.10.00575
MA0149.10.021
MA0150.13.29073e-4
MA0152.10.0605
MA0153.10.646
MA0154.10.00411
MA0155.10.623
MA0156.11.32052e-4
MA0157.10.0257
MA0159.10.0157
MA0160.10.0221
MA0162.10.4
MA0163.12.09135e-6
MA0164.10.443
MA0258.10.00377
MA0259.10.485



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10864

Novel motifP-value
10.0532
100.108
1000.868
1010.982
1020.491
1030.0847
1040.526
1050.907
1060.0174
1070.683
1080.34
1090.0157
110.045
1100.204
1110.0138
1120.0245
1130.44
1140.00329
1150.447
1160.863
1170.0541
1180.229
1190.107
120.33
1200.193
1210.904
1220.412
1230.54
1240.463
1250.834
1260.162
1270.144
1280.293
1290.292
130.27
1300.115
1310.858
1320.98
1330.332
1340.668
1350.37
1360.418
1370.24
1380.0747
1390.00305
140.949
1400.0872
1410.235
1420.674
1436.41796e-4
1440.98
1450.916
1460.937
1470.534
1480.0622
1490.11
150.0999
1500.415
1510.324
1520.035
1530.488
1540.816
1550.0573
1560.566
1570.373
1580.195
1590.917
160.177
1600.164
1610.505
1620.903
1630.395
1640.0159
1650.296
1660.157
1670.77
1680.505
1690.00952
170.0799
180.0496
190.345
20.457
200.982
210.361
220.206
230.0647
240.545
250.518
260.18
270.182
280.943
290.0899
30.0823
300.954
310.697
320.023
330.486
340.624
350.291
360.193
370.0437
380.235
390.949
40.66
400.143
410.225
420.253
430.111
440.116
450.578
460.0637
470.132
480.197
490.12
50.198
500.631
510.277
520.486
530.803
540.296
550.238
560.43
570.485
580.181
590.0572
60.991
600.066
610.168
620.1
630.207
640.361
650.0893
660.503
670.418
680.551
690.557
70.311
700.0069
710.0593
720.176
730.0269
740.531
750.0411
760.25
770.107
780.134
790.0783
80.26
800.875
810.499
820.0432
830.94
840.338
850.00713
860.184
870.453
880.947
890.127
90.323
900.72
910.645
920.0363
930.0756
940.0643
950.0354
960.192
970.66
980.274
990.99



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10864


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002605 (astrocyte of the cerebral cortex)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000194 (human astrocyte of the cerebral cortex sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)

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