FFCP PHASE1:Hg19::chr1:6845582..6845591,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:6845582..6845591,+
|short_description=p2@CAMTA1
|description=CAGE_peak_2_at_CAMTA1_5end
|association_with_transcript=0bp_to_ENST00000439411_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23261 | |EntrezGene=23261 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18806 | |HGNC=18806 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000439411_5end | |||
|cluster_id=chr1:6845582..6845591,+ | |||
|description=CAGE_peak_2_at_CAMTA1_5end | |||
|id=chr1:6845582..6845591,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.25e-07;18!CL:0000789;5.25e-07;18!CL:0002419;5.25e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,8.33e-08,136;CL:0000791,3.44e-07,18;CL:0000789,3.44e-07,18;CL:0002420,3.44e-07,18;CL:0002419,3.44e-07,18;CL:0000790,3.44e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;5.25e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.88e-20!57;UBERON:0005068!2.88e-20!57;UBERON:0006241!2.88e-20!57;UBERON:0007135!2.88e-20!57;UBERON:0001017!6.25e-18!82;UBERON:0005743!7.75e-18!86;UBERON:0002616!1.44e-17!59;UBERON:0002780!1.46e-17!41;UBERON:0001890!1.46e-17!41;UBERON:0006240!1.46e-17!41;UBERON:0003080!5.28e-17!42;UBERON:0007023!5.62e-17!115;UBERON:0000955!7.33e-17!69;UBERON:0006238!7.33e-17!69;UBERON:0000073!1.55e-16!94;UBERON:0001016!1.55e-16!94;UBERON:0003075!1.95e-16!86;UBERON:0007284!1.95e-16!86;UBERON:0002346!2.39e-15!90;UBERON:0001893!2.41e-15!34;UBERON:0002020!2.81e-15!34;UBERON:0003528!2.81e-15!34;UBERON:0001869!5.13e-15!32;UBERON:0002791!9.45e-15!33;UBERON:0003056!1.98e-13!61;UBERON:0002619!3.42e-12!22;UBERON:0000956!1.84e-11!25;UBERON:0000203!1.84e-11!25;UBERON:0001950!4.07e-11!20;UBERON:0000153!8.90e-11!129;UBERON:0007811!8.90e-11!129;UBERON:0000033!2.80e-10!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;4.19e-16;32!UBERON:0001893;9.28e-16;34!UBERON:0003528;1.07e-15;34!UBERON:0002020;1.07e-15;34!UBERON:0002791;1.60e-15;32!UBERON:0002780;6.25e-15;41!UBERON:0001890;6.25e-15;41!UBERON:0002619;1.30e-14;22!UBERON:0000956;5.73e-14;25!UBERON:0000203;5.73e-14;25!UBERON:0001950;2.64e-13;20!UBERON:0000073;3.76e-13;53!UBERON:0002616;3.76e-13;53!UBERON:0000955;1.60e-09;68!UBERON:0001017;5.33e-08;75!UBERON:0001016;1.42e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.58e-23,56;UBERON:0005068,1.58e-23,56;UBERON:0006241,1.58e-23,56;UBERON:0007135,1.58e-23,56;UBERON:0000073,3.97e-23,53;UBERON:0002616,3.97e-23,53;UBERON:0003075,8.55e-21,82;UBERON:0007284,8.55e-21,82;UBERON:0002780,2.33e-20,41;UBERON:0001890,2.33e-20,41;UBERON:0003080,2.33e-20,41;UBERON:0006240,2.33e-20,41;UBERON:0001017,4.34e-20,81;UBERON:0000955,2.04e-19,68;UBERON:0006238,2.04e-19,68;UBERON:0002346,3.63e-19,86;UBERON:0001016,1.23e-18,89;UBERON:0001893,9.58e-18,34;UBERON:0003528,1.15e-17,34;UBERON:0002020,1.15e-17,34;UBERON:0001869,2.34e-17,32;UBERON:0002791,1.04e-16,32;UBERON:0007023,1.59e-16,114;UBERON:0003056,2.89e-16,61;UBERON:0010314,2.33e-15,132;UBERON:0002619,4.41e-14,22;UBERON:0010371,1.65e-13,104;UBERON:0000956,3.61e-13,25;UBERON:0000203,3.61e-13,25;UBERON:0001950,8.14e-13,20;UBERON:0004121,1.52e-07,171;UBERON:0000924,1.52e-07,171;UBERON:0006601,1.52e-07,171 | |||
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| ||
|short_description=p2@CAMTA1 | |||
}} | }} |
Latest revision as of 02:44, 19 September 2015
Short description: | p2@CAMTA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CAMTA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000439411_5end |
EntrezGene: | CAMTA1 |
HGNC: | 18806 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 8.33e-08 | 136 |
mature alpha-beta T cell | 3.44e-07 | 18 |
alpha-beta T cell | 3.44e-07 | 18 |
immature T cell | 3.44e-07 | 18 |
mature T cell | 3.44e-07 | 18 |
immature alpha-beta T cell | 3.44e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.58e-23 | 56 |
neural rod | 1.58e-23 | 56 |
future spinal cord | 1.58e-23 | 56 |
neural keel | 1.58e-23 | 56 |
regional part of nervous system | 3.97e-23 | 53 |
regional part of brain | 3.97e-23 | 53 |
neural plate | 8.55e-21 | 82 |
presumptive neural plate | 8.55e-21 | 82 |
regional part of forebrain | 2.33e-20 | 41 |
forebrain | 2.33e-20 | 41 |
anterior neural tube | 2.33e-20 | 41 |
future forebrain | 2.33e-20 | 41 |
central nervous system | 4.34e-20 | 81 |
brain | 2.04e-19 | 68 |
future brain | 2.04e-19 | 68 |
neurectoderm | 3.63e-19 | 86 |
nervous system | 1.23e-18 | 89 |
telencephalon | 9.58e-18 | 34 |
brain grey matter | 1.15e-17 | 34 |
gray matter | 1.15e-17 | 34 |
cerebral hemisphere | 2.34e-17 | 32 |
regional part of telencephalon | 1.04e-16 | 32 |
adult organism | 1.59e-16 | 114 |
pre-chordal neural plate | 2.89e-16 | 61 |
structure with developmental contribution from neural crest | 2.33e-15 | 132 |
regional part of cerebral cortex | 4.41e-14 | 22 |
ecto-epithelium | 1.65e-13 | 104 |
cerebral cortex | 3.61e-13 | 25 |
pallium | 3.61e-13 | 25 |
neocortex | 8.14e-13 | 20 |
ectoderm-derived structure | 1.52e-07 | 171 |
ectoderm | 1.52e-07 | 171 |
presumptive ectoderm | 1.52e-07 | 171 |