FF:11427-118G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004672 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004672 | |||
|accession_numbers=CAGE;DRX008406;DRR009278;DRZ000703;DRZ002088;DRZ012053;DRZ013438 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037114;DRR041480;DRZ007122 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001987,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001987,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002577 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002577 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.92!831.57!HAND1;;chr2:19558373..19558392,-!p1@OSR1!2.13!348.96!OSR1;;chr19:46801639..46801699,+!p1@HIF3A!2.01!101.60!HIF3A;;chr10:8096631..8096660,+!p1@GATA3!1.91!96.16!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.87!72.88!ZBED2;;chr19:46800289..46800327,+!p2@HIF3A!1.87!72.88!HIF3A;;chr8:102504651..102504683,+!p1@GRHL2!1.71!50.80!GRHL2;;chr17:7493405..7493419,-!p1@SOX15!1.70!49.59!SOX15;;chr10:8096772..8096787,+!p2@GATA3!1.61!47.17!GATA3;;chr1:38512457..38512474,-!p1@POU3F1!1.61!42.94!POU3F1;;chr5:3595977..3595999,+!p1@IRX1!1.59!37.80!IRX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.58!60.48!TFAP2A;;chr20:39317868..39317884,-!p1@MAFB!1.57!411.25!MAFB;;chr5:3595934..3595957,+!p2@IRX1!1.57!36.29!IRX1;;chr4:188916918..188916942,+!p1@ZFP42!1.56!35.08!ZFP42;;chr5:153857800..153857812,-!p2@HAND1!1.55!34.47!HAND1;;chr11:46299199..46299233,+!p1@CREB3L1!1.54!168.43!CREB3L1;;chr8:49833948..49833973,-!p2@SNAI2!1.50!185.67!SNAI2;;chr6:10415276..10415341,-!p2@TFAP2A!1.48!35.08!TFAP2A;;chr8:49833978..49833996,-!p1@SNAI2!1.45!533.11!SNAI2;;chr5:2751762..2751784,-!p1@IRX2!1.43!25.70!IRX2;;chr5:3595961..3595975,+!p3@IRX1!1.41!24.80!IRX1;;chr8:102504690..102504704,+!p3@GRHL2!1.41!24.49!GRHL2;;chr20:55204351..55204377,+!p1@TFAP2C!1.40!30.84!TFAP2C;;chr11:46299539..46299620,+!p2@CREB3L1!1.36!36.89!CREB3L1;;chr4:174451370..174451387,-!p1@HAND2!1.36!21.77!HAND2;;chr8:55370487..55370503,+!p1@SOX17!1.32!19.66!SOX17;;chr1:209979467..209979494,-!p1@IRF6!1.30!21.47!IRF6;;chr4:174450089..174450153,-!p2@HAND2!1.30!19.05!HAND2;;chr19:46806868..46806883,+!p3@HIF3A!1.29!18.45!HIF3A;;chr2:46524897..46524911,+!p2@EPAS1!1.28!50.20!EPAS1;;chr16:31076332..31076388,-!p3@ZNF668!1.22!15.42!ZNF668;;chr8:102504979..102505010,+!p2@GRHL2!1.22!15.42!GRHL2;;chr10:8095593..8095625,+!p3@GATA3!1.20!17.24!GATA3;;chr10:48355030..48355090,+!p1@ZNF488!1.19!18.75!ZNF488;;chr1:59249732..59249749,-!p2@JUN!1.17!164.80!JUN;;chr5:153857819..153857824,-!p3@HAND1!1.16!13.31!HAND1;;chr11:113930425..113930471,+!p1@ZBTB16!1.14!18.45!ZBTB16;;chr9:110251836..110251887,-!p4@KLF4!1.14!16.93!KLF4;;chr6:10415484..10415508,-!p3@TFAP2A!1.12!12.10!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!1.09!179.62!KLF4;;chr2:19558327..19558334,-!p2@OSR1!1.09!11.19!OSR1;;chr6:10412392..10412409,-!p4@TFAP2A!1.08!12.70!TFAP2A;;chr5:174151553..174151610,+!p1@MSX2!1.06!17.54!MSX2;;chr17:46132044..46132080,+!p4@NFE2L1!1.06!10.58!NFE2L1;;chr2:5832508..5832524,+!p1@SOX11!1.05!10.28!SOX11;;chr12:66218836..66218888,+!p1@HMGA2!1.04!94.65!HMGA2;;chr15:96869255..96869291,+!p6@NR2F2!1.04!18.14!NR2F2;;chr6:32095523..32095564,-!p2@ATF6B!1.04!13.61!ATF6B;;chr2:16080659..16080685,+!p1@MYCN!1.03!9.68!MYCN;;chr20:42295745..42295765,+!p1@MYBL2!1.02!156.94!MYBL2;;chr20:18038521..18038571,-!p1@OVOL2!1.02!9.37!OVOL2;;chr17:7492684..7492778,-!p2@SOX15!0.99!18.75!SOX15;;chr15:96869511..96869525,+!p16@NR2F2!0.95!8.77!NR2F2;;chr20:42295713..42295738,+!p2@MYBL2!0.94!47.48!MYBL2;;chr6:85473156..85473210,-!p2@TBX18!0.93!9.37!TBX18;;chr4:299227..299272,-!p1@ZNF732!0.93!7.56!ZNF732;;chr8:80679993..80680011,-!p1@HEY1!0.92!10.89!HEY1;;chr1:6479968..6479986,-!p1@HES2!0.92!7.26!HES2;;chr11:46333934..46333963,+!p5@CREB3L1!0.92!7.26!CREB3L1;;chr3:111314230..111314241,-!p2@ZBED2!0.92!7.26!ZBED2;;chr8:28243785..28243799,-!p6@ZNF395!0.91!8.77!ZNF395;;chr14:75988771..75988826,+!p1@BATF!0.90!9.37!BATF;;chr9:110250697..110250738,-!p2@KLF4!0.90!8.16!KLF4;;chr5:2751785..2751808,-!p2@IRX2!0.90!6.95!IRX2;;chr6:10412576..10412599,-!p5@TFAP2A!0.90!6.95!TFAP2A;;chr15:96869292..96869320,+!p15@NR2F2!0.89!9.98!NR2F2;;chr5:176738887..176738934,-!p1@MXD3!0.88!46.57!MXD3;;chr16:67881588..67881612,-!p2@CENPT!0.88!9.07!CENPT;;chr10:8100691..8100732,+!p5@GATA3!0.87!6.35!GATA3;;chr2:60780607..60780624,-!p2@BCL11A!0.85!19.66!BCL11A;;chr2:231084820..231084836,-!p5@SP110!0.83!6.65!SP110;;chr5:3596206..3596210,+!p4@IRX1!0.83!5.75!IRX1;;chr1:59249707..59249727,-!p1@JUN!0.82!252.50!JUN;;chr11:47236584..47236679,+!p1@DDB2!0.82!65.32!DDB2;;chr19:926055..926068,+!p2@ARID3A!0.81!12.70!ARID3A;;chr8:28243813..28243839,-!p4@ZNF395!0.81!10.28!ZNF395;;chr19:17356189..17356221,-!p2@NR2F6!0.81!9.37!NR2F6;;chr17:45928443..45928473,-!p2@SP6!0.81!5.44!SP6;;chr6:10413188..10413249,-!p7@TFAP2A!0.81!5.44!TFAP2A;;chr8:102504932..102504952,+!p4@GRHL2!0.81!5.44!GRHL2;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.44!KDM5D;;chrX:106960285..106960299,-!p1@TSC22D3!0.80!156.34!TSC22D3;;chr16:29817841..29817865,+!p1@MAZ!0.80!123.38!MAZ;;chr3:24536253..24536328,-!p1@THRB!0.80!10.58!THRB;;chr2:46524878..46524891,+!p3@EPAS1!0.80!9.68!EPAS1;;chr19:7580944..7581031,+!p1@ZNF358!0.79!171.15!ZNF358;;chr19:45908292..45908374,-!p1@PPP1R13L!0.79!49.89!PPP1R13L;;chr19:1592714..1592762,-!p1@MBD3!0.79!42.64!MBD3;;chr9:117150254..117150271,-!p1@AKNA!0.79!15.12!AKNA;;chr1:33721900..33721921,+!p2@ZNF362!0.79!13.31!ZNF362;;chr20:2673383..2673441,+!p1@EBF4!0.79!8.47!EBF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.79!5.14!CREB3L1;;chr13:7363313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| |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.92!831.57!HAND1;;chr2:19558373..19558392,-!p1@OSR1!2.13!348.96!OSR1;;chr19:46801639..46801699,+!p1@HIF3A!2.01!101.60!HIF3A;;chr10:8096631..8096660,+!p1@GATA3!1.91!96.16!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.87!72.88!ZBED2;;chr19:46800289..46800327,+!p2@HIF3A!1.87!72.88!HIF3A;;chr8:102504651..102504683,+!p1@GRHL2!1.71!50.80!GRHL2;;chr17:7493405..7493419,-!p1@SOX15!1.70!49.59!SOX15;;chr10:8096772..8096787,+!p2@GATA3!1.61!47.17!GATA3;;chr1:38512457..38512474,-!p1@POU3F1!1.61!42.94!POU3F1;;chr5:3595977..3595999,+!p1@IRX1!1.59!37.80!IRX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.58!60.48!TFAP2A;;chr20:39317868..39317884,-!p1@MAFB!1.57!411.25!MAFB;;chr5:3595934..3595957,+!p2@IRX1!1.57!36.29!IRX1;;chr4:188916918..188916942,+!p1@ZFP42!1.56!35.08!ZFP42;;chr5:153857800..153857812,-!p2@HAND1!1.55!34.47!HAND1;;chr11:46299199..46299233,+!p1@CREB3L1!1.54!168.43!CREB3L1;;chr8:49833948..49833973,-!p2@SNAI2!1.50!185.67!SNAI2;;chr6:10415276..10415341,-!p2@TFAP2A!1.48!35.08!TFAP2A;;chr8:49833978..49833996,-!p1@SNAI2!1.45!533.11!SNAI2;;chr5:2751762..2751784,-!p1@IRX2!1.43!25.70!IRX2;;chr5:3595961..3595975,+!p3@IRX1!1.41!24.80!IRX1;;chr8:102504690..102504704,+!p3@GRHL2!1.41!24.49!GRHL2;;chr20:55204351..55204377,+!p1@TFAP2C!1.40!30.84!TFAP2C;;chr11:46299539..46299620,+!p2@CREB3L1!1.36!36.89!CREB3L1;;chr4:174451370..174451387,-!p1@HAND2!1.36!21.77!HAND2;;chr8:55370487..55370503,+!p1@SOX17!1.32!19.66!SOX17;;chr1:209979467..209979494,-!p1@IRF6!1.30!21.47!IRF6;;chr4:174450089..174450153,-!p2@HAND2!1.30!19.05!HAND2;;chr19:46806868..46806883,+!p3@HIF3A!1.29!18.45!HIF3A;;chr2:46524897..46524911,+!p2@EPAS1!1.28!50.20!EPAS1;;chr16:31076332..31076388,-!p3@ZNF668!1.22!15.42!ZNF668;;chr8:102504979..102505010,+!p2@GRHL2!1.22!15.42!GRHL2;;chr10:8095593..8095625,+!p3@GATA3!1.20!17.24!GATA3;;chr10:48355030..48355090,+!p1@ZNF488!1.19!18.75!ZNF488;;chr1:59249732..59249749,-!p2@JUN!1.17!164.80!JUN;;chr5:153857819..153857824,-!p3@HAND1!1.16!13.31!HAND1;;chr11:113930425..113930471,+!p1@ZBTB16!1.14!18.45!ZBTB16;;chr9:110251836..110251887,-!p4@KLF4!1.14!16.93!KLF4;;chr6:10415484..10415508,-!p3@TFAP2A!1.12!12.10!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!1.09!179.62!KLF4;;chr2:19558327..19558334,-!p2@OSR1!1.09!11.19!OSR1;;chr6:10412392..10412409,-!p4@TFAP2A!1.08!12.70!TFAP2A;;chr5:174151553..174151610,+!p1@MSX2!1.06!17.54!MSX2;;chr17:46132044..46132080,+!p4@NFE2L1!1.06!10.58!NFE2L1;;chr2:5832508..5832524,+!p1@SOX11!1.05!10.28!SOX11;;chr12:66218836..66218888,+!p1@HMGA2!1.04!94.65!HMGA2;;chr15:96869255..96869291,+!p6@NR2F2!1.04!18.14!NR2F2;;chr6:32095523..32095564,-!p2@ATF6B!1.04!13.61!ATF6B;;chr2:16080659..16080685,+!p1@MYCN!1.03!9.68!MYCN;;chr20:42295745..42295765,+!p1@MYBL2!1.02!156.94!MYBL2;;chr20:18038521..18038571,-!p1@OVOL2!1.02!9.37!OVOL2;;chr17:7492684..7492778,-!p2@SOX15!0.99!18.75!SOX15;;chr15:96869511..96869525,+!p16@NR2F2!0.95!8.77!NR2F2;;chr20:42295713..42295738,+!p2@MYBL2!0.94!47.48!MYBL2;;chr6:85473156..85473210,-!p2@TBX18!0.93!9.37!TBX18;;chr4:299227..299272,-!p1@ZNF732!0.93!7.56!ZNF732;;chr8:80679993..80680011,-!p1@HEY1!0.92!10.89!HEY1;;chr1:6479968..6479986,-!p1@HES2!0.92!7.26!HES2;;chr11:46333934..46333963,+!p5@CREB3L1!0.92!7.26!CREB3L1;;chr3:111314230..111314241,-!p2@ZBED2!0.92!7.26!ZBED2;;chr8:28243785..28243799,-!p6@ZNF395!0.91!8.77!ZNF395;;chr14:75988771..75988826,+!p1@BATF!0.90!9.37!BATF;;chr9:110250697..110250738,-!p2@KLF4!0.90!8.16!KLF4;;chr5:2751785..2751808,-!p2@IRX2!0.90!6.95!IRX2;;chr6:10412576..10412599,-!p5@TFAP2A!0.90!6.95!TFAP2A;;chr15:96869292..96869320,+!p15@NR2F2!0.89!9.98!NR2F2;;chr5:176738887..176738934,-!p1@MXD3!0.88!46.57!MXD3;;chr16:67881588..67881612,-!p2@CENPT!0.88!9.07!CENPT;;chr10:8100691..8100732,+!p5@GATA3!0.87!6.35!GATA3;;chr2:60780607..60780624,-!p2@BCL11A!0.85!19.66!BCL11A;;chr2:231084820..231084836,-!p5@SP110!0.83!6.65!SP110;;chr5:3596206..3596210,+!p4@IRX1!0.83!5.75!IRX1;;chr1:59249707..59249727,-!p1@JUN!0.82!252.50!JUN;;chr11:47236584..47236679,+!p1@DDB2!0.82!65.32!DDB2;;chr19:926055..926068,+!p2@ARID3A!0.81!12.70!ARID3A;;chr8:28243813..28243839,-!p4@ZNF395!0.81!10.28!ZNF395;;chr19:17356189..17356221,-!p2@NR2F6!0.81!9.37!NR2F6;;chr17:45928443..45928473,-!p2@SP6!0.81!5.44!SP6;;chr6:10413188..10413249,-!p7@TFAP2A!0.81!5.44!TFAP2A;;chr8:102504932..102504952,+!p4@GRHL2!0.81!5.44!GRHL2;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.44!KDM5D;;chrX:106960285..106960299,-!p1@TSC22D3!0.80!156.34!TSC22D3;;chr16:29817841..29817865,+!p1@MAZ!0.80!123.38!MAZ;;chr3:24536253..24536328,-!p1@THRB!0.80!10.58!THRB;;chr2:46524878..46524891,+!p3@EPAS1!0.80!9.68!EPAS1;;chr19:7580944..7581031,+!p1@ZNF358!0.79!171.15!ZNF358;;chr19:45908292..45908374,-!p1@PPP1R13L!0.79!49.89!PPP1R13L;;chr19:1592714..1592762,-!p1@MBD3!0.79!42.64!MBD3;;chr9:117150254..117150271,-!p1@AKNA!0.79!15.12!AKNA;;chr1:33721900..33721921,+!p2@ZNF362!0.79!13.31!ZNF362;;chr20:2673383..2673441,+!p1@EBF4!0.79!8.47!EBF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.79!5.14!CREB3L1;;chr13:73633131..73633149,+!p1@KLF5!0.78!58.97!KLF5;;chr20:32274179..32274213,-!p1@E2F1!0.78!36.59!E2F1;;chr16:29817789..29817838,+!p2@MAZ!0.77!72.88!MAZ;;chr1:8484314..8484348,-!p7@RERE!0.77!14.21!RERE;;chr16:86600426..86600441,+!p1@FOXC2!0.77!13.00!FOXC2;;chr16:73082004..73082033,-!p5@ZFHX3!0.77!8.16!ZFHX3;;chr5:174151612..174151633,+!p2@MSX2!0.77!4.84!MSX2;;chr7:27153454..27153469,-!p2@HOXA3!0.77!4.84!HOXA3;;chr16:29818160..29818188,+!p6@MAZ!0.75!23.59!MAZ;;chr19:926001..926046,+!p1@ARID3A!0.74!16.93!ARID3A;;chr3:52001426..52001447,-!p3@PCBP4!0.74!13.91!PCBP4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.74!4.54!PEG3;;chr17:41614135..41614151,-!p20@ETV4!0.74!4.54!ETV4;;chr1:59249688..59249703,-!p3@JUN!0.73!29.03!JUN;;chr19:47922750..47922795,-!p1@MEIS3!0.73!7.56!MEIS3;;chr1:151032860..151032918,+!p1@MLLT11!0.72!56.85!MLLT11;;chr7:6655225..6655279,+!p1@ENST00000457543!0.72!6.65!ZNF853;;chr6:31126291..31126399,+!p1@TCF19!0.71!44.75!TCF19;;chr8:28243661..28243709,-!p1@ZNF395!0.71!26.61!ZNF395;;chr1:151032922..151032951,+!p2@MLLT11!0.71!7.26!MLLT11;;chr16:29818199..29818216,+!p11@MAZ!0.71!7.26!MAZ;;chr16:29817617..29817664,+!p4@MAZ!0.70!47.17!MAZ;;chr7:138666053..138666146,-!p1@KIAA1549!0.70!18.45!KIAA1549;;chr12:53625966..53626012,-!p2@RARG!0.70!11.79!RARG;;chr12:2986275..2986363,-!p1@FOXM1!0.69!45.06!FOXM1;;chr19:58220517..58220583,-!p1@ZNF154!0.69!13.91!ZNF154;;chr4:149366111..149366128,-!p7@NR3C2!0.69!3.93!NR3C2;;chr10:8097295..8097320,+!p6@GATA3!0.69!3.93!GATA3;;chr10:8097321..8097348,+!p4@GATA3!0.69!3.93!GATA3;;chr17:41623692..41623715,-!p1@ETV4!0.68!18.45!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!0.68!11.19!HMGA2;;chr12:54772960..54773015,-!p3@ZNF385A!0.67!20.56!ZNF385A;;chr11:113930291..113930339,+!p2@ZBTB16!0.67!6.35!ZBTB16;;chr8:80680024..80680046,-!p2@HEY1!0.67!4.23!HEY1;;chr12:54447637..54447659,+!p4@HOXC4!0.67!3.63!HOXC4;;chr16:30102547..30102556,-!p6@TBX6!0.67!3.63!TBX6;;chr14:75894714..75894733,+!p1@JDP2!0.66!117.03!JDP2;;chr19:49865646..49865718,-!p1@TEAD2!0.66!35.68!TEAD2;;chr20:306177..306211,+!p2@SOX12!0.66!27.82!SOX12;;chr3:71630980..71631110,-!p3@FOXP1!0.66!14.21!FOXP1;;chr6:31869828..31869880,-!p1@ZBTB12!0.66!7.26!ZBTB12;;chr1:8483878..8483907,-!p4@RERE!0.64!14.82!RERE;;chr20:32274150..32274166,-!p2@E2F1!0.64!6.95!E2F1;;chr2:25475120..25475176,-!p2@DNMT3A!0.64!4.84!DNMT3A;;chr12:54447599..54447630,+!p3@HOXC4!0.64!4.23!HOXC4;;chr8:28243649..28243660,-!p7@ZNF395!0.64!4.23!ZNF395;;chr2:96012397..96012417,+!p3@KCNIP3!0.64!3.33!KCNIP3;;chr15:96869165..96869183,+!p20@NR2F2!0.64!3.33!NR2F2;;chr17:45928521..45928539,-!p1@SP6!0.64!3.33!SP6;;chr1:149858461..149858479,+!p1@BOLA1!0.63!1510.14!BOLA1;;chr6:33285505..33285529,-!p1@ZBTB22!0.63!26.31!ZBTB22;;chr8:145669791..145669834,-!p1@TONSL!0.63!10.58!TONSL;;chr12:66218183..66218209,+!p4@HMGA2!0.63!6.95!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.62!270.34!TAX1BP3;;chr1:33721873..33721898,+!p3@ZNF362!0.62!6.65!ZNF362;;chr6:35464817..35464894,-!p1@TEAD3!0.61!57.15!TEAD3;;chr1:164528410..164528428,+!p1@PBX1!0.61!27.22!PBX1;;chr4:2263809..2263854,-!p1@MXD4!0.60!138.49!MXD4;;chr16:29817665..29817719,+!p3@MAZ!0.60!55.04!MAZ;;chr16:67881647..67881663,-!p3@CENPT!0.60!3.02!CENPT;;chr4:149365827..149365870,-!p5@NR3C2!0.60!3.02!NR3C2;;chr11:125034640..125034655,+!p1@PKNOX2!0.60!3.02!PKNOX2;;chr11:46333979..46333991,+!p7@CREB3L1!0.60!3.02!CREB3L1;;chr6:10415263..10415274,-!p8@TFAP2A!0.60!3.02!TFAP2A;;chr2:85360499..85360598,+!p1@TCF7L1!0.59!19.35!TCF7L1;;chr12:66218598..66218645,+!p2@HMGA2!0.59!16.03!HMGA2;;chr1:161015676..161015694,-!p3@USF1!0.59!13.00!USF1;;chr17:41622765..41622821,-!p2@ETV4!0.59!4.84!ETV4;;chr15:96869114..96869160,+!p11@NR2F2!0.59!4.23!NR2F2;;chr16:30538079..30538124,-!p3@ZNF768!0.58!9.37!ZNF768;;chr14:24837368..24837401,+!p1@NFATC4!0.58!7.56!NFATC4;;chr17:38465413..38465438,+!p5@RARA!0.58!4.84!RARA;;chr9:132427972..132428056,+!p1@PRRX2!0.58!3.93!PRRX2;;chrX:107019163..107019179,-!p7@TSC22D3!0.58!3.33!TSC22D3;;chr3:71631382..71631413,-!p20@FOXP1!0.58!3.33!FOXP1;;chr19:8579030..8579061,-!p1@ZNF414!0.57!54.43!ZNF414;;chr3:52001448..52001478,-!p2@PCBP4!0.57!47.17!PCBP4;;chrX:48900782..48900793,-!p3@TFE3!0.57!5.75!TFE3;;chr3:42947600..42947680,+!p1@ZNF662!0.57!4.23!ZNF662;;chr1:209979411..209979433,-!p2@IRF6!0.57!2.72!IRF6;;chr11:113930401..113930422,+!p3@ZBTB16!0.57!2.72!ZBTB16;;chr11:125034605..125034636,+!p2@PKNOX2!0.57!2.72!PKNOX2;;chr14:95236551..95236576,-!p2@GSC!0.57!2.72!GSC;;chr10:77161504..77161530,-!p1@ZNF503!0.56!44.15!ZNF503;;chr17:20492136..20492165,+!p1@MEIS3P2!0.56!4.54!MEIS3P2;;chr2:46602879..46602899,+!p8@EPAS1!0.56!3.33!EPAS1;;chr6:144329500..144329526,-!p4@PLAGL1!0.55!6.95!PLAGL1;;chr6:85474299..85474324,-!p1@TBX18!0.55!5.14!TBX18;;chr6:144329531..144329546,-!p5@PLAGL1!0.55!4.54!PLAGL1;;chr6:126240356..126240379,+!p7@NCOA7!0.55!3.33!NCOA7;;chr16:29818132..29818144,+!p12@MAZ!0.54!5.75!MAZ;;chr17:61919812..61919833,-!p6@SMARCD2!0.54!3.33!SMARCD2;;chr22:30162893..30162907,-!p2@ZMAT5!0.54!3.33!ZMAT5;;chr15:96869222..96869251,+!p18@NR2F2!0.54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CFL5!0.21!0.60!TCFL5;;chr21:30671121..30671126,+!p14@BACH1!0.21!0.60!BACH1;;chr21:38071403..38071428,+!p2@SIM2!0.21!0.60!SIM2;;chr14:99738138..99738163,-!p1@BCL11B!0.21!0.60!BCL11B;;chr15:31618889..31618902,+!p15@KLF13!0.21!0.60!KLF13;;chr15:37391614..37391626,-!p18@MEIS2!0.21!0.60!MEIS2;;chr15:66994523..66994541,+!p5@SMAD6!0.21!0.60!SMAD6;;chr16:30102828..30102840,-!p5@TBX6!0.21!0.60!TBX6;;chr16:30102849..30102865,-!p2@TBX6!0.21!0.60!TBX6;;chr16:3185079..3185081,+!p7@ZNF213!0.21!0.60!ZNF213;;chr17:3571934..3571935,-!p3@TAX1BP3!0.21!0.60!TAX1BP3;;chr17:41623716..41623727,-!p12@ETV4!0.21!0.60!ETV4;;chr17:46622175..46622186,-!p12@HOXB2!0.21!0.60!HOXB2;;chr17:4981535..4981551,+!p2@ZFP3!0.21!0.60!ZFP3;;chr17:56565257..56565283,-!p2@HSF5!0.21!0.60!HSF5;;chr17:59529743..59529798,+!p1@TBX4!0.21!0.60!TBX4;;chr17:7382810..7382822,-!p12@ZBTB4!0.21!0.60!ZBTB4;;chr17:7492504..7492520,-!p3@SOX15!0.21!0.60!SOX15;;chr18:22932004..22932021,-!p2@ZNF521!0.21!0.60!ZNF521;;chr18:47808050..47808060,-!p4@MBD1!0.21!0.60!MBD1;;chr18:74207227..74207238,-!p5@ZNF516!0.21!0.60!ZNF516;;chr19:11998716..11998727,+!p3@ZNF69!0.21!0.60!ZNF69;;chr19:18391642..18391645,-!p10@JUND!0.21!0.60!JUND;;chr19:18391785..18391792,-!p9@JUND!0.21!0.60!JUND;;chr19:1863887..1863918,-!p6@KLF16!0.21!0.60!KLF16;;chr19:22605136..22605154,-!p1@ZNF98!0.21!0.60!ZNF98;;chr19:31840168..31840186,-!p6@TSHZ3!0.21!0.60!TSHZ3;;chr19:31840278..31840300,-!p5@TSHZ3!0.21!0.60!TSHZ3;;chr19:3574400..3574430,+!p6@HMG20B!0.21!0.60!HMG20B;;chr5:174151648..174151659,+!p3@MSX2!0.21!0.60!MSX2;;chr6:10412338..10412345,-!p17@TFAP2A!0.21!0.60!TFAP2A;;chr6:10412640..10412655,-!p14@TFAP2A!0.21!0.60!TFAP2A;;chr6:10415645..10415675,-!p19@TFAP2A!0.21!0.60!TFAP2A;;chr6:15245824..15245846,+!p13@JARID2!0.21!0.60!JARID2;;chr6:1612300..1612324,+!p3@FOXC1!0.21!0.60!FOXC1;;chr6:32158046..32158055,-!p4@PBX2!0.21!0.60!PBX2;;chr6:32158286..32158296,-!p12@PBX2!0.21!0.60!PBX2;;chr6:391743..391759,+!p1@IRF4!0.21!0.60!IRF4;;chr6:41701581..41701613,-!p2@TFEB!0.21!0.60!TFEB;;chr6:42419928..42419963,-!p6@TRERF1!0.21!0.60!TRERF1;;chr6:50786591..50786614,+!p1@TFAP2B!0.21!0.60!TFAP2B;;chr7:138665915..138665946,-!p3@KIAA1549!0.21!0.60!KIAA1549;;chr7:138666354..138666370,-!p6@KIAA1549!0.21!0.60!KIAA1549;;chr7:150102756..150102772,+!p5@ZNF775!0.21!0.60!ZNF775;;chr7:15726243..15726293,-!p2@MEOX2!0.21!0.60!MEOX2;;chr7:27190547..27190591,-!p1@HOXA6!0.21!0.60!HOXA6;;chr7:27205136..27205164,-!p1@HOXA9!0.21!0.60!HOXA9;;chr7:42276771..42276782,-!p4@GLI3!0.21!0.60!GLI3;;chr7:96654133..96654150,-!p1@DLX5!0.21!0.60!DLX5;;chr7:97840743..97840786,+!p1@BHLHA15!0.21!0.60!BHLHA15;;chr8:93074848..93074871,-!p3@RUNX1T1!0.21!0.60!RUNX1T1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.21!0.60!RUNX1T1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.21!0.60!RUNX1T1;;chr9:100615499..100615519,+!p1@FOXE1!0.21!0.60!FOXE1;;chr9:117139023..117139030,-!p5@AKNA!0.21!0.60!AKNA;;chr2:70314601..70314622,+!p1@PCBP1!0.20!336.56!PCBP1;;chr12:8185288..8185339,+!p1@FOXJ2!0.20!14.21!FOXJ2;;chr6:32095968..32096032,-!p1@ATF6B!0.20!11.79!ATF6B;;chr1:6640046..6640101,+!p1@ZBTB48!0.20!10.58!ZBTB48;;chr17:36861393..36861439,+!p2@MLLT6!0.20!7.86!MLLT6;;chr19:21106049..21106072,+!p1@ZNF85!0.20!7.26!ZNF85;;chr1:249132484..249132505,+!p4@ZNF672!0.20!3.63!ZNF672;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.20!3.33!ZNF525;;chr6:41040923..41040952,+!p2@NFYA!0.20!3.02!NFYA;;chr22:46546406..46546440,+!p1@PPARA!0.20!2.72!PPARA;;chr19:33864571..33864596,+!p2@CEBPG!0.20!2.72!CEBPG;;chr6:7108855..7108903,+!p5@RREB1!0.20!2.42!RREB1;;chr19:15560730..15560772,-!p3@WIZ!0.20!2.12!WIZ;;chr7:44143978..44143989,+!p2@AEBP1!0.20!1.81!AEBP1;;chr6:122720837..122720857,+!p2@HSF2!0.20!1.21!HSF2;;chr8:145159846..145159889,+!p6@MAF1!0.20!1.21!MAF1;;chr15:57210692..57210713,-!p5@ZNF280D!0.20!1.21!ZNF280D;;chr14:62213827..62213853,+!p6@HIF1A!0.20!1.21!HIF1A;;chr9:35732514..35732530,+!p5@CREB3!0.20!1.21!CREB3;;chr12:66218003..66218018,+!p9@HMGA2!0.20!0.91!HMGA2;;chr6:28973366..28973394,-!p2@ZNF311!0.20!0.91!ZNF311;;chr7:148844205..148844236,+!p5@ZNF398!0.20!0.91!ZNF398;;chr15:37392576..37392589,-!p12@MEIS2!0.20!0.91!MEIS2;;chr19:23299814..23299844,+!p1@ZNF730!0.20!0.91!ZNF730;;chr1:41204530..41204541,+!p8@NFYC!0.20!0.91!NFYC;;chr14:62162224..62162254,+!p1@HIF1A!0.19!205.63!HIF1A;;chr22:42229100..42229146,+!p1@SREBF2!0.19!139.70!SREBF2;;chr7:100076765..100076861,-!p1@TSC22D4!0.19!48.38!TSC22D4;;chr16:88636795..88636827,+!p1@ZC3H18!0.19!33.26!ZC3H18;;chr16:3930681..3930721,-!p1@CREBBP!0.19!24.19!CREBBP;;chr16:67226019..67226127,+!p1@E2F4!0.19!17.84!E2F4;;chr11:62369108..62369183,-!p3@MTA2!0.19!17.54!MTA2;;chr20:50808290..50808328,-!p1@ZFP64!0.19!15.72!ZFP64;;chr6:33168126..33168180,-!p2@RXRB!0.19!14.21!RXRB;;chr2:217277169..217277266,+!p1@SMARCAL1!0.19!13.91!SMARCAL1;;chr12:125052112..125052172,-!p2@NCOR2!0.19!12.10!NCOR2;;chr1:27022164..27022220,+!p2@ARID1A!0.19!9.68!ARID1A;;chr18:51750888..51750920,-!p3@MBD2!0.19!9.37!MBD2;;chr6:157100031..157100112,+!p2@ARID1B!0.19!6.95!ARID1B;;chr19:35264089..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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002577;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001987;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003124;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11427-118G5 | |id=FF:11427-118G5 | ||
|is_a=EFO:0002091;;FF:0000136 | |is_a=EFO:0002091;;FF:0000136 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12037 | |||
|library_id_phase_based=2:CNhs12037 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11427 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.ACTTGA.11427 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11427 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.ACTTGA.11427 | |||
|name=Placental Epithelial Cells, donor3 | |name=Placental Epithelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12037,LSID837,release011,COMPLETED | |profile_hcage=CNhs12037,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 61: | Line 81: | ||
|rna_tube_id=118G5 | |rna_tube_id=118G5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.ACTTGA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 83: | Line 105: | ||
|top_motifs=PPARG:1.93393490652;XCPE1{core}:1.90928801082;ZNF148:1.73132820066;HOX{A5,B5}:1.67899270537;GLI1..3:1.65084492649;TP53:1.63293391629;GCM1,2:1.57740160343;ZIC1..3:1.5654309092;PAX5:1.55836314945;TFAP2{A,C}:1.52986420773;ZNF423:1.38690428274;TBP:1.36628093946;ESR1:1.27795907984;ZNF384:1.26871866666;TEAD1:1.26431185486;SP1:1.20136426963;RXR{A,B,G}:1.18074171227;RXRA_VDR{dimer}:1.17339010785;MAZ:1.13857973315;AR:1.04267815344;TFAP4:1.00799025091;NKX2-3_NKX2-5:0.937482935643;NKX2-1,4:0.931530425073;SPZ1:0.926256413136;TBX4,5:0.903670764053;EBF1:0.888286032654;SNAI1..3:0.886026935973;HMX1:0.878434135125;TFCP2:0.873672833819;HAND1,2:0.871209462353;FOXM1:0.869398158157;ZNF238:0.828614932393;UFEwm:0.800095004823;RORA:0.761130308023;GTF2A1,2:0.75474283757;GFI1:0.749158246521;IKZF1:0.724827190699;NFY{A,B,C}:0.71164518132;EP300:0.685314308957;NR3C1:0.671880705541;EN1,2:0.666669803522;ONECUT1,2:0.661140969583;MTF1:0.651414362695;KLF4:0.609614076585;HIC1:0.558519768649;PAX1,9:0.554607914719;E2F1..5:0.511874406012;ZEB1:0.510338703093;SOX17:0.497829537701;YY1:0.491686063558;RREB1:0.479616848557;POU2F1..3:0.452487531044;HES1:0.445193457114;PATZ1:0.392847412097;NKX2-2,8:0.390982567883;PBX1:0.389678607711;FOS_FOS{B,L1}_JUN{B,D}:0.337576420134;GTF2I:0.337421263686;TLX1..3_NFIC{dimer}:0.326117754644;ALX4:0.297386764439;BACH2:0.263930329731;SOX{8,9,10}:0.26069142372;FOXL1:0.245341806504;ZNF143:0.236063893684;ZBTB6:0.223926507603;HLF:0.218791959041;TFAP2B:0.207124994374;HIF1A:0.206909795483;XBP1:0.185268282954;TAL1_TCF{3,4,12}:0.165067364223;GZF1:0.155987925024;TOPORS:0.144177651168;TFDP1:0.136972116228;NR6A1:0.124400473388;PAX8:0.0914828643411;STAT5{A,B}:0.0884358453732;LEF1_TCF7_TCF7L1,2:0.0753071409637;POU3F1..4:0.0686806433835;bHLH_family:0.0663022108157;LHX3,4:0.0619911846921;HOX{A4,D4}:0.0576503062281;NR5A1,2:0.0399493817778;SOX5:0.0135599823365;AIRE:-0.0363454936718;NANOG{mouse}:-0.0759407695371;FOSL2:-0.0880678308746;ELK1,4_GABP{A,B1}:-0.0993442427177;REST:-0.101405680659;ATF6:-0.103065280194;NFE2:-0.129468009418;HNF4A_NR2F1,2:-0.136951521505;HNF1A:-0.153237338697;ESRRA:-0.173775349896;ARID5B:-0.194934417765;MED-1{core}:-0.205608298519;MZF1:-0.247579650418;MYB:-0.250372256846;HOXA9_MEIS1:-0.265659636322;NFIL3:-0.26725791305;HOX{A6,A7,B6,B7}:-0.267267930962;JUN:-0.280821969325;POU6F1:-0.282561033552;CDC5L:-0.292788265817;SMAD1..7,9:-0.294803438294;STAT1,3:-0.295049076666;NFE2L2:-0.295401767505;POU1F1:-0.298457355795;CEBPA,B_DDIT3:-0.308813642257;ATF2:-0.318094371195;SRF:-0.32363779077;NHLH1,2:-0.341434371843;RUNX1..3:-0.346870974533;MYBL2:-0.348340382746;PRRX1,2:-0.352166515767;NFKB1_REL_RELA:-0.353924185606;HSF1,2:-0.361897260828;ADNP_IRX_SIX_ZHX:-0.371244661245;GATA6:-0.381088803694;FOXQ1:-0.394805863252;MYOD1:-0.406622948515;GFI1B:-0.420911485923;EGR1..3:-0.423109801855;T:-0.477050020891;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.500415586836;RFX1:-0.515520921825;ATF4:-0.563926461001;NRF1:-0.581420223655;OCT4_SOX2{dimer}:-0.600895291633;MEF2{A,B,C,D}:-0.603124362825;MTE{core}:-0.619001500246;SOX2:-0.622735826173;FOXO1,3,4:-0.62803681864;PAX4:-0.629948768023;DBP:-0.697902832949;NKX3-2:-0.716484348178;PAX3,7:-0.718407556174;BREu{core}:-0.719836692664;PAX2:-0.720833744509;HMGA1,2:-0.738787642681;SPIB:-0.741429618521;RBPJ:-0.742015059177;ETS1,2:-0.745341421828;NFATC1..3:-0.754032274944;MAFB:-0.755341175907;ELF1,2,4:-0.756668138111;PRDM1:-0.757897913152;BPTF:-0.771558688044;LMO2:-0.775397989612;MYFfamily:-0.778815118372;STAT2,4,6:-0.801246655588;SPI1:-0.808196426341;SREBF1,2:-0.825147164107;CREB1:-0.843942598537;NR1H4:-0.863829345112;PITX1..3:-0.904181083115;CUX2:-0.93470817613;NKX3-1:-0.942773821195;FOX{F1,F2,J1}:-0.97240491952;TLX2:-0.993557507158;EVI1:-1.03279807611;FOXA2:-1.04003447293;NANOG:-1.05967110376;ALX1:-1.07611711488;PAX6:-1.07683521695;GATA4:-1.08533267966;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.15713918001;AHR_ARNT_ARNT2:-1.15891735791;DMAP1_NCOR{1,2}_SMARC:-1.16982835708;ZFP161:-1.17316597497;FOXN1:-1.17838078888;IRF7:-1.2061494288;ATF5_CREB3:-1.20796044623;IRF1,2:-1.21323784361;POU5F1:-1.22022971916;FOX{D1,D2}:-1.23644323069;TEF:-1.23716715898;NFE2L1:-1.27279462876;FOXP3:-1.27372316009;FOX{I1,J2}:-1.27758659401;CRX:-1.28267823459;NFIX:-1.30430129509;FOXD3:-1.31561590032;TGIF1:-1.32322135391;VSX1,2:-1.46404649777;RFX2..5_RFXANK_RFXAP:-1.46574137666;CDX1,2,4:-1.53865327074;FOXP1:-1.55026172149;PDX1:-1.76901561735;IKZF2:-1.99365917592;NKX6-1,2:-2.02902150855;ZBTB16:-2.26864875786;HBP1_HMGB_SSRP1_UBTF:-2.72336102483 | |top_motifs=PPARG:1.93393490652;XCPE1{core}:1.90928801082;ZNF148:1.73132820066;HOX{A5,B5}:1.67899270537;GLI1..3:1.65084492649;TP53:1.63293391629;GCM1,2:1.57740160343;ZIC1..3:1.5654309092;PAX5:1.55836314945;TFAP2{A,C}:1.52986420773;ZNF423:1.38690428274;TBP:1.36628093946;ESR1:1.27795907984;ZNF384:1.26871866666;TEAD1:1.26431185486;SP1:1.20136426963;RXR{A,B,G}:1.18074171227;RXRA_VDR{dimer}:1.17339010785;MAZ:1.13857973315;AR:1.04267815344;TFAP4:1.00799025091;NKX2-3_NKX2-5:0.937482935643;NKX2-1,4:0.931530425073;SPZ1:0.926256413136;TBX4,5:0.903670764053;EBF1:0.888286032654;SNAI1..3:0.886026935973;HMX1:0.878434135125;TFCP2:0.873672833819;HAND1,2:0.871209462353;FOXM1:0.869398158157;ZNF238:0.828614932393;UFEwm:0.800095004823;RORA:0.761130308023;GTF2A1,2:0.75474283757;GFI1:0.749158246521;IKZF1:0.724827190699;NFY{A,B,C}:0.71164518132;EP300:0.685314308957;NR3C1:0.671880705541;EN1,2:0.666669803522;ONECUT1,2:0.661140969583;MTF1:0.651414362695;KLF4:0.609614076585;HIC1:0.558519768649;PAX1,9:0.554607914719;E2F1..5:0.511874406012;ZEB1:0.510338703093;SOX17:0.497829537701;YY1:0.491686063558;RREB1:0.479616848557;POU2F1..3:0.452487531044;HES1:0.445193457114;PATZ1:0.392847412097;NKX2-2,8:0.390982567883;PBX1:0.389678607711;FOS_FOS{B,L1}_JUN{B,D}:0.337576420134;GTF2I:0.337421263686;TLX1..3_NFIC{dimer}:0.326117754644;ALX4:0.297386764439;BACH2:0.263930329731;SOX{8,9,10}:0.26069142372;FOXL1:0.245341806504;ZNF143:0.236063893684;ZBTB6:0.223926507603;HLF:0.218791959041;TFAP2B:0.207124994374;HIF1A:0.206909795483;XBP1:0.185268282954;TAL1_TCF{3,4,12}:0.165067364223;GZF1:0.155987925024;TOPORS:0.144177651168;TFDP1:0.136972116228;NR6A1:0.124400473388;PAX8:0.0914828643411;STAT5{A,B}:0.0884358453732;LEF1_TCF7_TCF7L1,2:0.0753071409637;POU3F1..4:0.0686806433835;bHLH_family:0.0663022108157;LHX3,4:0.0619911846921;HOX{A4,D4}:0.0576503062281;NR5A1,2:0.0399493817778;SOX5:0.0135599823365;AIRE:-0.0363454936718;NANOG{mouse}:-0.0759407695371;FOSL2:-0.0880678308746;ELK1,4_GABP{A,B1}:-0.0993442427177;REST:-0.101405680659;ATF6:-0.103065280194;NFE2:-0.129468009418;HNF4A_NR2F1,2:-0.136951521505;HNF1A:-0.153237338697;ESRRA:-0.173775349896;ARID5B:-0.194934417765;MED-1{core}:-0.205608298519;MZF1:-0.247579650418;MYB:-0.250372256846;HOXA9_MEIS1:-0.265659636322;NFIL3:-0.26725791305;HOX{A6,A7,B6,B7}:-0.267267930962;JUN:-0.280821969325;POU6F1:-0.282561033552;CDC5L:-0.292788265817;SMAD1..7,9:-0.294803438294;STAT1,3:-0.295049076666;NFE2L2:-0.295401767505;POU1F1:-0.298457355795;CEBPA,B_DDIT3:-0.308813642257;ATF2:-0.318094371195;SRF:-0.32363779077;NHLH1,2:-0.341434371843;RUNX1..3:-0.346870974533;MYBL2:-0.348340382746;PRRX1,2:-0.352166515767;NFKB1_REL_RELA:-0.353924185606;HSF1,2:-0.361897260828;ADNP_IRX_SIX_ZHX:-0.371244661245;GATA6:-0.381088803694;FOXQ1:-0.394805863252;MYOD1:-0.406622948515;GFI1B:-0.420911485923;EGR1..3:-0.423109801855;T:-0.477050020891;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.500415586836;RFX1:-0.515520921825;ATF4:-0.563926461001;NRF1:-0.581420223655;OCT4_SOX2{dimer}:-0.600895291633;MEF2{A,B,C,D}:-0.603124362825;MTE{core}:-0.619001500246;SOX2:-0.622735826173;FOXO1,3,4:-0.62803681864;PAX4:-0.629948768023;DBP:-0.697902832949;NKX3-2:-0.716484348178;PAX3,7:-0.718407556174;BREu{core}:-0.719836692664;PAX2:-0.720833744509;HMGA1,2:-0.738787642681;SPIB:-0.741429618521;RBPJ:-0.742015059177;ETS1,2:-0.745341421828;NFATC1..3:-0.754032274944;MAFB:-0.755341175907;ELF1,2,4:-0.756668138111;PRDM1:-0.757897913152;BPTF:-0.771558688044;LMO2:-0.775397989612;MYFfamily:-0.778815118372;STAT2,4,6:-0.801246655588;SPI1:-0.808196426341;SREBF1,2:-0.825147164107;CREB1:-0.843942598537;NR1H4:-0.863829345112;PITX1..3:-0.904181083115;CUX2:-0.93470817613;NKX3-1:-0.942773821195;FOX{F1,F2,J1}:-0.97240491952;TLX2:-0.993557507158;EVI1:-1.03279807611;FOXA2:-1.04003447293;NANOG:-1.05967110376;ALX1:-1.07611711488;PAX6:-1.07683521695;GATA4:-1.08533267966;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.15713918001;AHR_ARNT_ARNT2:-1.15891735791;DMAP1_NCOR{1,2}_SMARC:-1.16982835708;ZFP161:-1.17316597497;FOXN1:-1.17838078888;IRF7:-1.2061494288;ATF5_CREB3:-1.20796044623;IRF1,2:-1.21323784361;POU5F1:-1.22022971916;FOX{D1,D2}:-1.23644323069;TEF:-1.23716715898;NFE2L1:-1.27279462876;FOXP3:-1.27372316009;FOX{I1,J2}:-1.27758659401;CRX:-1.28267823459;NFIX:-1.30430129509;FOXD3:-1.31561590032;TGIF1:-1.32322135391;VSX1,2:-1.46404649777;RFX2..5_RFXANK_RFXAP:-1.46574137666;CDX1,2,4:-1.53865327074;FOXP1:-1.55026172149;PDX1:-1.76901561735;IKZF2:-1.99365917592;NKX6-1,2:-2.02902150855;ZBTB16:-2.26864875786;HBP1_HMGB_SSRP1_UBTF:-2.72336102483 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11427-118G5;search_select_hide=table117:FF:11427-118G5 | |||
}} | }} |
Latest revision as of 18:00, 4 June 2020
Name: | Placental Epithelial Cells, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12037 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12037
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12037
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.208 |
10 | 10 | 0.3 |
100 | 100 | 0.238 |
101 | 101 | 0.108 |
102 | 102 | 0.509 |
103 | 103 | 0.908 |
104 | 104 | 0.931 |
105 | 105 | 0.531 |
106 | 106 | 0.181 |
107 | 107 | 0.251 |
108 | 108 | 0.396 |
109 | 109 | 0.0214 |
11 | 11 | 0.605 |
110 | 110 | 0.222 |
111 | 111 | 0.391 |
112 | 112 | 0.689 |
113 | 113 | 0.0836 |
114 | 114 | 0.585 |
115 | 115 | 0.0794 |
116 | 116 | 0.182 |
117 | 117 | 0.536 |
118 | 118 | 0.395 |
119 | 119 | 0.939 |
12 | 12 | 0.794 |
120 | 120 | 0.0871 |
121 | 121 | 0.232 |
122 | 122 | 0.507 |
123 | 123 | 0.00447 |
124 | 124 | 0.0755 |
125 | 125 | 0.247 |
126 | 126 | 0.428 |
127 | 127 | 0.979 |
128 | 128 | 0.988 |
129 | 129 | 0.689 |
13 | 13 | 0.27 |
130 | 130 | 0.0898 |
131 | 131 | 0.0294 |
132 | 132 | 0.437 |
133 | 133 | 0.377 |
134 | 134 | 0.121 |
135 | 135 | 0.93 |
136 | 136 | 0.0478 |
137 | 137 | 0.0185 |
138 | 138 | 0.171 |
139 | 139 | 0.168 |
14 | 14 | 0.808 |
140 | 140 | 0.557 |
141 | 141 | 0.984 |
142 | 142 | 0.259 |
143 | 143 | 0.633 |
144 | 144 | 0.887 |
145 | 145 | 0.836 |
146 | 146 | 0.233 |
147 | 147 | 0.302 |
148 | 148 | 0.0123 |
149 | 149 | 0.274 |
15 | 15 | 0.314 |
150 | 150 | 0.263 |
151 | 151 | 0.429 |
152 | 152 | 0.0463 |
153 | 153 | 0.0442 |
154 | 154 | 0.254 |
155 | 155 | 0.304 |
156 | 156 | 0.285 |
157 | 157 | 0.594 |
158 | 158 | 0.528 |
159 | 159 | 0.723 |
16 | 16 | 0.0973 |
160 | 160 | 0.0751 |
161 | 161 | 0.0936 |
162 | 162 | 0.27 |
163 | 163 | 0.895 |
164 | 164 | 0.368 |
165 | 165 | 0.711 |
166 | 166 | 0.802 |
167 | 167 | 0.12 |
168 | 168 | 0.79 |
169 | 169 | 0.0891 |
17 | 17 | 0.188 |
18 | 18 | 0.787 |
19 | 19 | 0.288 |
2 | 2 | 0.0739 |
20 | 20 | 0.847 |
21 | 21 | 0.925 |
22 | 22 | 0.0736 |
23 | 23 | 0.858 |
24 | 24 | 0.711 |
25 | 25 | 0.559 |
26 | 26 | 0.42 |
27 | 27 | 0.558 |
28 | 28 | 0.474 |
29 | 29 | 0.304 |
3 | 3 | 0.621 |
30 | 30 | 0.063 |
31 | 31 | 0.481 |
32 | 32 | 5.65071e-9 |
33 | 33 | 0.362 |
34 | 34 | 0.359 |
35 | 35 | 0.16 |
36 | 36 | 0.278 |
37 | 37 | 0.589 |
38 | 38 | 0.898 |
39 | 39 | 0.318 |
4 | 4 | 0.747 |
40 | 40 | 0.00839 |
41 | 41 | 0.341 |
42 | 42 | 0.357 |
43 | 43 | 0.951 |
44 | 44 | 0.558 |
45 | 45 | 0.183 |
46 | 46 | 0.902 |
47 | 47 | 0.834 |
48 | 48 | 0.548 |
49 | 49 | 0.342 |
5 | 5 | 0.152 |
50 | 50 | 0.491 |
51 | 51 | 0.461 |
52 | 52 | 0.547 |
53 | 53 | 0.284 |
54 | 54 | 0.575 |
55 | 55 | 0.373 |
56 | 56 | 0.527 |
57 | 57 | 0.764 |
58 | 58 | 0.259 |
59 | 59 | 0.0592 |
6 | 6 | 0.739 |
60 | 60 | 0.994 |
61 | 61 | 0.782 |
62 | 62 | 0.153 |
63 | 63 | 0.991 |
64 | 64 | 0.351 |
65 | 65 | 0.499 |
66 | 66 | 0.531 |
67 | 67 | 0.732 |
68 | 68 | 0.787 |
69 | 69 | 0.0147 |
7 | 7 | 0.989 |
70 | 70 | 0.518 |
71 | 71 | 0.602 |
72 | 72 | 0.728 |
73 | 73 | 0.028 |
74 | 74 | 0.0292 |
75 | 75 | 0.604 |
76 | 76 | 0.159 |
77 | 77 | 0.00495 |
78 | 78 | 0.938 |
79 | 79 | 0.0113 |
8 | 8 | 0.97 |
80 | 80 | 0.78 |
81 | 81 | 0.19 |
82 | 82 | 0.885 |
83 | 83 | 0.843 |
84 | 84 | 0.287 |
85 | 85 | 0.986 |
86 | 86 | 0.622 |
87 | 87 | 0.159 |
88 | 88 | 0.276 |
89 | 89 | 0.0996 |
9 | 9 | 0.338 |
90 | 90 | 0.0166 |
91 | 91 | 0.586 |
92 | 92 | 0.247 |
93 | 93 | 0.764 |
94 | 94 | 0.557 |
95 | 95 | 0.0961 |
96 | 96 | 0.218 |
97 | 97 | 0.484 |
98 | 98 | 0.823 |
99 | 99 | 0.0161 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12037
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002577 (placental epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001987 (placenta)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000136 (human placental epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA