FFCP PHASE1:Mm9::chr10:40603625..40603668,+: Difference between revisions
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{{FFCP|EntrezGene=83767|HGNC=|MCL_coexpression_id=1|UniProt=Q8R5H6|association_with_transcript=0bp_to_ENSMUST00000105509_5end|description=CAGE_peak_1_at_Wasf1_5end|id=chr10:40603625..40603668,+|ontology_enrichment_celltype=CL:0000540!5.64e-14!33;CL:0000047!5.64e-14!33;CL:0000031!5.64e-14!33;CL:0000404!5.64e-14!33;CL:0000117!4.48e-13!23;CL:0000337!4.48e-13!23;CL:0000221!1.54e-12!44;CL:0000133!1.54e-12!44;CL:0002319!3.66e-12!43;CL:0000393!3.24e-11!39;CL:0000211!3.24e-11!39;CL:0000055!1.30e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,5.13e-14,33;CL:0000047,5.13e-14,33;CL:0000031,5.13e-14,33;CL:0000404,5.13e-14,33;CL:0000117,4.10e-13,23;CL:0000337,4.10e-13,23;CL:0000221,1.42e-12,44;CL:0000133,1.42e-12,44;CL:0002319,3.38e-12,43;CL:0000393,3.01e-11,39;CL:0000211,3.01e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.02e-29!73;UBERON:0005743!1.02e-29!73;UBERON:0000073!3.81e-29!75;UBERON:0001016!3.81e-29!75;UBERON:0004121!6.94e-27!102;UBERON:0000924!6.94e-27!102;UBERON:0006601!6.94e-27!102;UBERON:0002346!3.97e-24!71;UBERON:0003075!3.97e-24!71;UBERON:0007284!3.97e-24!71;UBERON:0000033!7.58e-24!63;UBERON:0001049!1.28e-23!52;UBERON:0005068!1.28e-23!52;UBERON:0006241!1.28e-23!52;UBERON:0007135!1.28e-23!52;UBERON:0000955!1.74e-22!50;UBERON:0006238!1.74e-22!50;UBERON:0002616!8.09e-22!49;UBERON:0003056!2.82e-21!49;UBERON:0003080!6.21e-19!40;UBERON:0002020!6.29e-19!34;UBERON:0002780!1.97e-18!39;UBERON:0001890!1.97e-18!39;UBERON:0006240!1.97e-18!39;UBERON:0002791!3.22e-16!29;UBERON:0003528!3.22e-16!29;UBERON:0001893!3.22e-16!29;UBERON:0000956!6.67e-12!21;UBERON:0001869!6.67e-12!21;UBERON:0000203!6.67e-12!21;UBERON:0000153!7.39e-12!94;UBERON:0007811!7.55e-11!86;UBERON:0002619!9.89e-10!17;UBERON:0002021!4.27e-08!10;UBERON:0000411!4.27e-08!10;UBERON:0001950!4.27e-08!10;UBERON:0000468!5.08e-08!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.20e-30,73;UBERON:0001016,3.08e-29,75;UBERON:0004121,9.23e-29,95;UBERON:0000924,9.23e-29,95;UBERON:0006601,9.23e-29,95;UBERON:0002346,1.08e-26,64;UBERON:0003075,1.08e-26,64;UBERON:0007284,1.08e-26,64;UBERON:0010371,3.65e-25,73;UBERON:0000073,8.33e-25,54;UBERON:0001049,1.09e-23,52;UBERON:0005068,1.09e-23,52;UBERON:0006241,1.09e-23,52;UBERON:0007135,1.09e-23,52;UBERON:0003056,2.43e-21,49;UBERON:0000955,5.95e-21,47;UBERON:0006238,5.95e-21,47;UBERON:0002616,2.71e-20,46;UBERON:0010314,1.46e-19,92;UBERON:0003080,5.44e-19,40;UBERON:0002020,5.51e-19,34;UBERON:0002780,1.73e-18,39;UBERON:0001890,1.73e-18,39;UBERON:0006240,1.73e-18,39;UBERON:0003528,2.87e-16,29;UBERON:0002791,2.87e-16,29;UBERON:0001893,2.87e-16,29;UBERON:0000956,6.16e-12,21;UBERON:0001869,6.16e-12,21;UBERON:0000203,6.16e-12,21;UBERON:0002619,9.29e-10,17;UBERON:0002021,4.06e-08,10;UBERON:0000411,4.06e-08,10;UBERON:0001950,4.06e-08,10|phase1_expression=29.9478344085965,2.09385244583617,1.81999695755814,0,0.500895729946347,1.51091344720701,2.33612640595526,0,1.68946466582,0.70219357896598,0,0,0,0.0874204024189974,0.333109761815663,0,0,0,0,0,36.3134848945068,0.198581902401771,0,1.11994695955385,1.37645568640302,1.14846392823004,2.15380998079537,1.29282739611533,0,0.252030129759931,0,12.065582795733,15.3766196896143,0,0,0.166234645358492,0.408338712524738,0,0,0,0,0,0,4.90997590104751,5.47435428585379,8.44315059943735,3.9119567217402,13.0815093828268,7.24964403023757,5.63846707315422,5.03951117851305,10.062679505548,0,0,0.336093799142464,2.82985379639542,2.57880095944881,5.15672092277442,132.112648941317,141.769582444905,141.978234385384,4.06613438482959,2.66788438833342,0.899899717281399,2.96659908770092,0,25.7656095045828,34.1954291736184,74.449141637487,88.0238717922623,95.277207492176,80.2679266174688,84.592651184468,92.8480258049352,90.0947427571422,116.740785899473,56.1590993096882,86.6997025598425,66.3580223666972,126.610836220986,127.167824607349,128.66560252752,41.039900853203,45.0210088025344,66.9256325262428,94.870404522521,87.4162120106492,112.958064170132,6.73963120665338,9.44644501334819,1.44932244350839,1.72084775396277,3.39985666853875,2.15881276655127,2.59910566979068,1.34408066129201,6.74133216632409,5.79463096765396,5.71529210126311,4.59341446863442,35.0700115243934,5.13305909657271,2.54805239706646,7.11066703153331,3.030874574157,1.77351905832569,1.51657333504435,5.59501010623394,8.02707439306232,2.82040064223167,15.0932234286538,10.3518262626128,8.30215790121811,4.52167921657868,8.23120949949934,3.76999773989026,6.67426412882809,2.31358971071859,0,5.50007289821191,1.98757366614354,2.90925151881133,1.86391761218122,104.522744533122,101.372206097712,0.510914110417183,0,0,0,63.8108123864545,210.450277296568,179.685723521396,239.182264584572,259.806904647616,86.0242504476579,145.205930445643,13.2391173005411,2.36373244159177,2.0217820674694,10.3116509384372,30.1879427673473,24.8294272788151,32.0510591053522,27.4282768461001,36.0593445502038,31.0035203089336,32.139691523987,22.2484898835553,40.0956466855087,34.9846248310466,27.9762287420679,16.22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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=83767 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q8R5H6 | |||
|association_with_transcript=0bp_to_ENSMUST00000105509_5end | |||
|cluster_id=chr10:40603625..40603668,+ | |||
|description=CAGE_peak_1_at_Wasf1_5end | |||
|id=chr10:40603625..40603668,+ | |||
|ontology_enrichment_celltype=CL:0000540!5.64e-14!33;CL:0000047!5.64e-14!33;CL:0000031!5.64e-14!33;CL:0000404!5.64e-14!33;CL:0000117!4.48e-13!23;CL:0000337!4.48e-13!23;CL:0000221!1.54e-12!44;CL:0000133!1.54e-12!44;CL:0002319!3.66e-12!43;CL:0000393!3.24e-11!39;CL:0000211!3.24e-11!39;CL:0000055!1.30e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.13e-14,33;CL:0000047,5.13e-14,33;CL:0000031,5.13e-14,33;CL:0000404,5.13e-14,33;CL:0000117,4.10e-13,23;CL:0000337,4.10e-13,23;CL:0000221,1.42e-12,44;CL:0000133,1.42e-12,44;CL:0002319,3.38e-12,43;CL:0000393,3.01e-11,39;CL:0000211,3.01e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.02e-29!73;UBERON:0005743!1.02e-29!73;UBERON:0000073!3.81e-29!75;UBERON:0001016!3.81e-29!75;UBERON:0004121!6.94e-27!102;UBERON:0000924!6.94e-27!102;UBERON:0006601!6.94e-27!102;UBERON:0002346!3.97e-24!71;UBERON:0003075!3.97e-24!71;UBERON:0007284!3.97e-24!71;UBERON:0000033!7.58e-24!63;UBERON:0001049!1.28e-23!52;UBERON:0005068!1.28e-23!52;UBERON:0006241!1.28e-23!52;UBERON:0007135!1.28e-23!52;UBERON:0000955!1.74e-22!50;UBERON:0006238!1.74e-22!50;UBERON:0002616!8.09e-22!49;UBERON:0003056!2.82e-21!49;UBERON:0003080!6.21e-19!40;UBERON:0002020!6.29e-19!34;UBERON:0002780!1.97e-18!39;UBERON:0001890!1.97e-18!39;UBERON:0006240!1.97e-18!39;UBERON:0002791!3.22e-16!29;UBERON:0003528!3.22e-16!29;UBERON:0001893!3.22e-16!29;UBERON:0000956!6.67e-12!21;UBERON:0001869!6.67e-12!21;UBERON:0000203!6.67e-12!21;UBERON:0000153!7.39e-12!94;UBERON:0007811!7.55e-11!86;UBERON:0002619!9.89e-10!17;UBERON:0002021!4.27e-08!10;UBERON:0000411!4.27e-08!10;UBERON:0001950!4.27e-08!10;UBERON:0000468!5.08e-08!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.20e-30,73;UBERON:0001016,3.08e-29,75;UBERON:0004121,9.23e-29,95;UBERON:0000924,9.23e-29,95;UBERON:0006601,9.23e-29,95;UBERON:0002346,1.08e-26,64;UBERON:0003075,1.08e-26,64;UBERON:0007284,1.08e-26,64;UBERON:0010371,3.65e-25,73;UBERON:0000073,8.33e-25,54;UBERON:0001049,1.09e-23,52;UBERON:0005068,1.09e-23,52;UBERON:0006241,1.09e-23,52;UBERON:0007135,1.09e-23,52;UBERON:0003056,2.43e-21,49;UBERON:0000955,5.95e-21,47;UBERON:0006238,5.95e-21,47;UBERON:0002616,2.71e-20,46;UBERON:0010314,1.46e-19,92;UBERON:0003080,5.44e-19,40;UBERON:0002020,5.51e-19,34;UBERON:0002780,1.73e-18,39;UBERON:0001890,1.73e-18,39;UBERON:0006240,1.73e-18,39;UBERON:0003528,2.87e-16,29;UBERON:0002791,2.87e-16,29;UBERON:0001893,2.87e-16,29;UBERON:0000956,6.16e-12,21;UBERON:0001869,6.16e-12,21;UBERON:0000203,6.16e-12,21;UBERON:0002619,9.29e-10,17;UBERON:0002021,4.06e-08,10;UBERON:0000411,4.06e-08,10;UBERON:0001950,4.06e-08,10 | |||
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| |||
|short_description=p1@Wasf1 | |||
}} |
Latest revision as of 00:09, 26 September 2015
Short description: | p1@Wasf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Wasf1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000105509_5end |
EntrezGene: | Wasf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.13e-14 | 33 |
neuronal stem cell | 5.13e-14 | 33 |
neuroblast | 5.13e-14 | 33 |
electrically signaling cell | 5.13e-14 | 33 |
CNS neuron (sensu Vertebrata) | 4.10e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.10e-13 | 23 |
ectodermal cell | 1.42e-12 | 44 |
neurectodermal cell | 1.42e-12 | 44 |
neural cell | 3.38e-12 | 43 |
electrically responsive cell | 3.01e-11 | 39 |
electrically active cell | 3.01e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.20e-30 | 73 |
nervous system | 3.08e-29 | 75 |
ectoderm-derived structure | 9.23e-29 | 95 |
ectoderm | 9.23e-29 | 95 |
presumptive ectoderm | 9.23e-29 | 95 |
neurectoderm | 1.08e-26 | 64 |
neural plate | 1.08e-26 | 64 |
presumptive neural plate | 1.08e-26 | 64 |
ecto-epithelium | 3.65e-25 | 73 |
regional part of nervous system | 8.33e-25 | 54 |
neural tube | 1.09e-23 | 52 |
neural rod | 1.09e-23 | 52 |
future spinal cord | 1.09e-23 | 52 |
neural keel | 1.09e-23 | 52 |
pre-chordal neural plate | 2.43e-21 | 49 |
brain | 5.95e-21 | 47 |
future brain | 5.95e-21 | 47 |
regional part of brain | 2.71e-20 | 46 |
structure with developmental contribution from neural crest | 1.46e-19 | 92 |
anterior neural tube | 5.44e-19 | 40 |
gray matter | 5.51e-19 | 34 |
regional part of forebrain | 1.73e-18 | 39 |
forebrain | 1.73e-18 | 39 |
future forebrain | 1.73e-18 | 39 |
brain grey matter | 2.87e-16 | 29 |
regional part of telencephalon | 2.87e-16 | 29 |
telencephalon | 2.87e-16 | 29 |
cerebral cortex | 6.16e-12 | 21 |
cerebral hemisphere | 6.16e-12 | 21 |
pallium | 6.16e-12 | 21 |
regional part of cerebral cortex | 9.29e-10 | 17 |
occipital lobe | 4.06e-08 | 10 |
visual cortex | 4.06e-08 | 10 |
neocortex | 4.06e-08 | 10 |