FFCP PHASE1:Mm9::chr13:13876545..13876632,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=14706|HGNC=|MCL_coexpression_id=93|UniProt=P50153|association_with_transcript=0bp_to_ENSMUST00000021734_5end|description=CAGE_peak_1_at_Gng4_5end|id=chr13:13876545..13876632,+|ontology_enrichment_celltype=CL:0000117!2.36e-10!23;CL:0000337!2.36e-10!23;CL:0000540!3.46e-09!33;CL:0000047!3.46e-09!33;CL:0000031!3.46e-09!33;CL:0000404!3.46e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.59e-10,23;CL:0000337,1.59e-10,23;CL:0000540,2.47e-09,33;CL:0000047,2.47e-09,33;CL:0000031,2.47e-09,33;CL:0000404,2.47e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!8.53e-23!102;UBERON:0000924!8.53e-23!102;UBERON:0006601!8.53e-23!102;UBERON:0001017!5.12e-20!73;UBERON:0005743!5.12e-20!73;UBERON:0002346!8.44e-20!71;UBERON:0003075!8.44e-20!71;UBERON:0007284!8.44e-20!71;UBERON:0000073!1.14e-19!75;UBERON:0001016!1.14e-19!75;UBERON:0001049!2.95e-18!52;UBERON:0005068!2.95e-18!52;UBERON:0006241!2.95e-18!52;UBERON:0007135!2.95e-18!52;UBERON:0000955!1.29e-16!50;UBERON:0006238!1.29e-16!50;UBERON:0002616!6.41e-16!49;UBERON:0000033!1.35e-15!63;UBERON:0003080!3.44e-15!40;UBERON:0003056!4.62e-15!49;UBERON:0002780!1.44e-14!39;UBERON:0001890!1.44e-14!39;UBERON:0006240!1.44e-14!39;UBERON:0002020!9.88e-14!34;UBERON:0002791!1.56e-10!29;UBERON:0003528!1.56e-10!29;UBERON:0001893!1.56e-10!29;UBERON:0002021!1.87e-07!10;UBERON:0000411!1.87e-07!10;UBERON:0001950!1.87e-07!10;UBERON:0000153!6.85e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.95e-23,95;UBERON:0000924,1.95e-23,95;UBERON:0006601,1.95e-23,95;UBERON:0001017,1.71e-22,73;UBERON:0001016,8.03e-22,75;UBERON:0000073,3.27e-21,54;UBERON:0001049,4.50e-20,52;UBERON:0005068,4.50e-20,52;UBERON:0006241,4.50e-20,52;UBERON:0007135,4.50e-20,52;UBERON:0002346,1.60e-19,64;UBERON:0003075,1.60e-19,64;UBERON:0007284,1.60e-19,64;UBERON:0010371,4.22e-19,73;UBERON:0000955,1.62e-16,47;UBERON:0006238,1.62e-16,47;UBERON:0003080,4.48e-16,40;UBERON:0002616,9.36e-16,46;UBERON:0002780,2.21e-15,39;UBERON:0001890,2.21e-15,39;UBERON:0006240,2.21e-15,39;UBERON:0003056,3.54e-15,49;UBERON:0002020,6.89e-15,34;UBERON:0003528,2.59e-11,29;UBERON:0002791,2.59e-11,29;UBERON:0001893,2.59e-11,29;UBERON:0010314,9.24e-11,92;UBERON:0002021,3.29e-08,10;UBERON:0000411,3.29e-08,10;UBERON:0001950,3.29e-08,10;UBERON:0002619,1.06e-07,17;UBERON:0000956,7.67e-07,21;UBERON:0001869,7.67e-07,21;UBERON:0000203,7.67e-07,21|phase1_expression=0,0,0.909998478779072,0,0,2.35030980676646,1.86890112476421,0,0.281577444303333,0.468129052643987,0.856089841127525,0.159544317990673,0,0,0,0,0,0,0,1.27316895539409,4.08207792725135,0,0,0.319984845586813,0.45881856213434,0,0.430761996159075,0.215471232685889,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0.7813353445238,0,0,0,0,0.629484089877886,0.506884656097573,0.183546752161682,0,0,0,0,0,0,0.671130424230945,0,0,0,0,0,12.3413041124355,17.4567023159771,17.747279298173,0,0.889294796111139,0,0,0,2.99600110518405,2.68952813725088,0.622137673850866,2.29510095163874,0.841299845405528,36.2776750192831,36.6641777979678,4.04219637409348,2.58782771749238,13.7882817991503,12.1127469099328,9.83192503255945,18.279177457493,11.6059933202571,14.2720724019759,12.5019208933622,20.3803589271008,25.3243174514256,16.1966142643419,34.4715445004191,38.725097177356,24.791126294765,1.8931548333296,0.377857800533928,0,0,0,0,0,0,2.52799956237153,0.170430322578058,0.259786004602869,0,0,0,0,0,0,0,1.01104889002957,1.25602267690966,0,7.42210695324124,1.56136794089522,3.04465478312141,2.7673859670727,3.76806601381556,3.99801604261396,2.89033160058254,12.8541383221874,1.01219549843938,0.884610551949874,0.808834249737046,0,0,1.86391761218122,2.04946557908083,1.8850203613211,1.53274233125155,0.359445373517761,0,0.254140454146129,24.2660835835813,10.5225138648284,35.4345272958278,28.1595398711488,15.8543583544805,18.4931359658008,18.9822277789276,0.712875546952214,1.8661045591514,3.28539585963777,1.47309299120532,0.520481771850815,0.919608417733892,1.0803727788321,2.56198190320716,4.150226448231,2.69038812598185,4.96619140166563,4.9153640440413,0.215567992932842,1.13463648100692,1.93546236580344,3.06874025398605,2.50242524303038,12.1888258282758,6.99659263787008,0.796137067273973,0,0,0,0.207125772535502,0,0.36012412292203,0,0,0.154267112887378,0,0.268273401399619,0.467061369468678,0.658239399653922,0.32833492815819,0.243206428637567,0.292399974850665,0.219550115291051,0.939444931322602,11.3556572224629,11.936935035997,1.65209391491899,0.793351699990633,0.213288250535234,1.16118335930219,1.15980715189884,0.605050573870028,1.77902435075896,2.09248188723815,2.84717436926707,1.4822905925161,1.50801125280162,2.18852119245266,2.53453313254856,0,2.59365659849633,1.59313018603494,0.189667900953082,0.571242563048644,0,0.203651327845314,0.581857461502877,0.701358198903186,0.885311519739602,1.03327103585722,0.627994911365499,0.616985819609003,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0.739012760666419,0.189491411770485,0,0.169745085775188,0.234690248288502,1.00503754465089,0.238043640886014,1.56106918286239,0.315270288212382,0.221464689648775,0.318909537314974,0.655453258862952,0.345369963731791,0.144649058581512,0,0,0,0,19.1055202085472,18.8710815413447,0,0.757412781613119,1.57754109708128,1.56175497718655,4.95473814785438,0.477937595905104,1.55959071857676,1.41538265394416,2.02405350837447,3.50707029493574,6.32460444714438,196.327324333724,1.56134093729095,3.02711526234334,1.62886959353576,1.31976098378028,1.32745138339963,3.15614827001476,4.23252979750651,3.20628635585027,5.31543407185391,5.53383266299069,5.42699415653264,7.63420831902762,6.06045543254026,2.84433082142234,1.05418608574999,2.06271086496374,51.7468200745758,0.720244376125241,4.2688365648309,4.50107773566344,12.5911565886014,12.8425548673491,15.9612549984057,32.8822145043767,1.87737366450968,0,2.20528398054962,8.57408515295696,7.10443477461984,6.93598636673792,6.08798954415996,6.40149509005739,2.04036585640896,16.3174265769249,0,0.206386867963223,0.185194527369712,0,0,0,1.35982743995084,1.95932033253121,0.967399816630967,0.954670618015114,0.474503990371703,2.03319467126849,1.18805874903981,1.04544148007234,1.31017538247707,1.88810084938749,4.3806331534428,1.30877970992015,1.42576470620972,8.69875038321696,0,0.149516546043979,0.330916980914195,0.388902376688095,0.516639293910924,0.168956125490778,0.234714477291508,0.651021924219751,0,0,0,0,0.202725215290164,0.513554785824136,0.25984164595559,0.179026695667481,0.39736270956253,0.360586348559907,0.147689527174577,0,0.0762068066549998,0,0,0.0962118416403295,0.116876902181569,2.26730383615211,0,0,0,1.35232715822533,2.064507229963,2.93042598827624,0.857473516316263,0,41.7916363536629,32.2227665555024,38.956894913879,44.5099742270151,17.1270629942661,16.6186657425734,22.9507650078814,16.2115633160719,15.8599843144472,18.1216109113137,0.415149390336707,1.99512436700516,1.36586884603307,4.132814190161,6.49800804146745,7.90527086335061,3.11145418922261,5.97501665992793,5.45562656306086,4.29585259998456,8.36481689637791,5.47016390019621,6.64854703036165,6.59459069770154,6.20303064720623,6.66811167796303,6.37363792696705,6.17309505483856,7.41754621445952,5.88795680537589,4.4573002810104,4.96932257246145,4.76872379894642,5.66851024866081,6.86998477031913,5.24610568928394,5.67076715905595,2.10455769150274,4.6173398707593,3.92799590160417,5.81311588808453,8.0773675547962,4.09231043169689,6.8172210121825,6.36591816237767,12.2407183189594,7.25187986180766,6.44613162144895,3.25190164517034,2.64709702943419,1.15933917810211|short_description=p1@Gng4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14706 | |||
|HGNC= | |||
|MCL_coexpression_id=93 | |||
|TSSclassifier=NA | |||
|UniProt=P50153 | |||
|association_with_transcript=0bp_to_ENSMUST00000021734_5end | |||
|cluster_id=chr13:13876545..13876632,+ | |||
|description=CAGE_peak_1_at_Gng4_5end | |||
|id=chr13:13876545..13876632,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.36e-10!23;CL:0000337!2.36e-10!23;CL:0000540!3.46e-09!33;CL:0000047!3.46e-09!33;CL:0000031!3.46e-09!33;CL:0000404!3.46e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.59e-10,23;CL:0000337,1.59e-10,23;CL:0000540,2.47e-09,33;CL:0000047,2.47e-09,33;CL:0000031,2.47e-09,33;CL:0000404,2.47e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.53e-23!102;UBERON:0000924!8.53e-23!102;UBERON:0006601!8.53e-23!102;UBERON:0001017!5.12e-20!73;UBERON:0005743!5.12e-20!73;UBERON:0002346!8.44e-20!71;UBERON:0003075!8.44e-20!71;UBERON:0007284!8.44e-20!71;UBERON:0000073!1.14e-19!75;UBERON:0001016!1.14e-19!75;UBERON:0001049!2.95e-18!52;UBERON:0005068!2.95e-18!52;UBERON:0006241!2.95e-18!52;UBERON:0007135!2.95e-18!52;UBERON:0000955!1.29e-16!50;UBERON:0006238!1.29e-16!50;UBERON:0002616!6.41e-16!49;UBERON:0000033!1.35e-15!63;UBERON:0003080!3.44e-15!40;UBERON:0003056!4.62e-15!49;UBERON:0002780!1.44e-14!39;UBERON:0001890!1.44e-14!39;UBERON:0006240!1.44e-14!39;UBERON:0002020!9.88e-14!34;UBERON:0002791!1.56e-10!29;UBERON:0003528!1.56e-10!29;UBERON:0001893!1.56e-10!29;UBERON:0002021!1.87e-07!10;UBERON:0000411!1.87e-07!10;UBERON:0001950!1.87e-07!10;UBERON:0000153!6.85e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.95e-23,95;UBERON:0000924,1.95e-23,95;UBERON:0006601,1.95e-23,95;UBERON:0001017,1.71e-22,73;UBERON:0001016,8.03e-22,75;UBERON:0000073,3.27e-21,54;UBERON:0001049,4.50e-20,52;UBERON:0005068,4.50e-20,52;UBERON:0006241,4.50e-20,52;UBERON:0007135,4.50e-20,52;UBERON:0002346,1.60e-19,64;UBERON:0003075,1.60e-19,64;UBERON:0007284,1.60e-19,64;UBERON:0010371,4.22e-19,73;UBERON:0000955,1.62e-16,47;UBERON:0006238,1.62e-16,47;UBERON:0003080,4.48e-16,40;UBERON:0002616,9.36e-16,46;UBERON:0002780,2.21e-15,39;UBERON:0001890,2.21e-15,39;UBERON:0006240,2.21e-15,39;UBERON:0003056,3.54e-15,49;UBERON:0002020,6.89e-15,34;UBERON:0003528,2.59e-11,29;UBERON:0002791,2.59e-11,29;UBERON:0001893,2.59e-11,29;UBERON:0010314,9.24e-11,92;UBERON:0002021,3.29e-08,10;UBERON:0000411,3.29e-08,10;UBERON:0001950,3.29e-08,10;UBERON:0002619,1.06e-07,17;UBERON:0000956,7.67e-07,21;UBERON:0001869,7.67e-07,21;UBERON:0000203,7.67e-07,21 | |||
|phase1_expression=0,0,0.909998478779072,0,0,2.35030980676646,1.86890112476421,0,0.281577444303333,0.468129052643987,0.856089841127525,0.159544317990673,0,0,0,0,0,0,0,1.27316895539409,4.08207792725135,0,0,0.319984845586813,0.45881856213434,0,0.430761996159075,0.215471232685889,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0.7813353445238,0,0,0,0,0.629484089877886,0.506884656097573,0.183546752161682,0,0,0,0,0,0,0.671130424230945,0,0,0,0,0,12.3413041124355,17.4567023159771,17.747279298173,0,0.889294796111139,0,0,0,2.99600110518405,2.68952813725088,0.622137673850866,2.29510095163874,0.841299845405528,36.2776750192831,36.6641777979678,4.04219637409348,2.58782771749238,13.7882817991503,12.1127469099328,9.83192503255945,18.279177457493,11.6059933202571,14.2720724019759,12.5019208933622,20.3803589271008,25.3243174514256,16.1966142643419,34.4715445004191,38.725097177356,24.791126294765,1.8931548333296,0.377857800533928,0,0,0,0,0,0,2.52799956237153,0.170430322578058,0.259786004602869,0,0,0,0,0,0,0,1.01104889002957,1.25602267690966,0,7.42210695324124,1.56136794089522,3.04465478312141,2.7673859670727,3.76806601381556,3.99801604261396,2.89033160058254,12.8541383221874,1.01219549843938,0.884610551949874,0.808834249737046,0,0,1.86391761218122,2.04946557908083,1.8850203613211,1.53274233125155,0.359445373517761,0,0.254140454146129,24.2660835835813,10.5225138648284,35.4345272958278,28.1595398711488,15.8543583544805,18.4931359658008,18.9822277789276,0.712875546952214,1.8661045591514,3.28539585963777,1.47309299120532,0.520481771850815,0.919608417733892,1.0803727788321,2.56198190320716,4.150226448231,2.69038812598185,4.96619140166563,4.9153640440413,0.215567992932842,1.13463648100692,1.93546236580344,3.06874025398605,2.50242524303038,12.1888258282758,6.99659263787008,0.796137067273973,0,0,0,0.207125772535502,0,0.36012412292203,0,0,0.154267112887378,0,0.268273401399619,0.467061369468678,0.658239399653922,0.32833492815819,0.243206428637567,0.292399974850665,0.219550115291051,0.939444931322602,11.3556572224629,11.936935035997,1.65209391491899,0.793351699990633,0.213288250535234,1.16118335930219,1.15980715189884,0.605050573870028,1.77902435075896,2.09248188723815,2.84717436926707,1.4822905925161,1.50801125280162,2.18852119245266,2.53453313254856,0,2.59365659849633,1.59313018603494,0.189667900953082,0.571242563048644,0,0.203651327845314,0.581857461502877,0.701358198903186,0.885311519739602,1.03327103585722,0.627994911365499,0.616985819609003,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0.739012760666419,0.189491411770485,0,0.169745085775188,0.234690248288502,1.00503754465089,0.238043640886014,1.56106918286239,0.315270288212382,0.221464689648775,0.318909537314974,0.655453258862952,0.345369963731791,0.144649058581512,0,0,0,0,19.1055202085472,18.8710815413447,0,0.757412781613119,1.57754109708128,1.56175497718655,4.95473814785438,0.477937595905104,1.55959071857676,1.41538265394416,2.02405350837447,3.50707029493574,6.32460444714438,196.327324333724,1.56134093729095,3.02711526234334,1.62886959353576,1.31976098378028,1.32745138339963,3.15614827001476,4.23252979750651,3.20628635585027,5.31543407185391,5.53383266299069,5.42699415653264,7.63420831902762,6.06045543254026,2.84433082142234,1.05418608574999,2.06271086496374,51.7468200745758,0.720244376125241,4.2688365648309,4.50107773566344,12.5911565886014,12.8425548673491,15.9612549984057,32.8822145043767,1.87737366450968,0,2.20528398054962,8.57408515295696,7.10443477461984,6.93598636673792,6.08798954415996,6.40149509005739,2.04036585640896,16.3174265769249,0,0.206386867963223,0.185194527369712,0,0,0,1.35982743995084,1.95932033253121,0.967399816630967,0.954670618015114,0.474503990371703,2.03319467126849,1.18805874903981,1.04544148007234,1.31017538247707,1.88810084938749,4.3806331534428,1.30877970992015,1.42576470620972,8.69875038321696,0,0.149516546043979,0.330916980914195,0.388902376688095,0.516639293910924,0.168956125490778,0.234714477291508,0.651021924219751,0,0,0,0,0.202725215290164,0.513554785824136,0.25984164595559,0.179026695667481,0.39736270956253,0.360586348559907,0.147689527174577,0,0.0762068066549998,0,0,0.0962118416403295,0.116876902181569,2.26730383615211,0,0,0,1.35232715822533,2.064507229963,2.93042598827624,0.857473516316263,0,41.7916363536629,32.2227665555024,38.956894913879,44.5099742270151,17.1270629942661,16.6186657425734,22.9507650078814,16.2115633160719,15.8599843144472,18.1216109113137,0.415149390336707,1.99512436700516,1.36586884603307,4.132814190161,6.49800804146745,7.90527086335061,3.11145418922261,5.97501665992793,5.45562656306086,4.29585259998456,8.36481689637791,5.47016390019621,6.64854703036165,6.59459069770154,6.20303064720623,6.66811167796303,6.37363792696705,6.17309505483856,7.41754621445952,5.88795680537589,4.4573002810104,4.96932257246145,4.76872379894642,5.66851024866081,6.86998477031913,5.24610568928394,5.67076715905595,2.10455769150274,4.6173398707593,3.92799590160417,5.81311588808453,8.0773675547962,4.09231043169689,6.8172210121825,6.36591816237767,12.2407183189594,7.25187986180766,6.44613162144895,3.25190164517034,2.64709702943419,1.15933917810211 | |||
|short_description=p1@Gng4 | |||
}} |
Latest revision as of 04:38, 27 September 2015
Short description: | p1@Gng4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gng4_5end |
Coexpression cluster: | MCL_coexpression_mm9:93 |
Association with transcript: | 0bp_to_ENSMUST00000021734_5end |
EntrezGene: | Gng4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.59e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.59e-10 | 23 |
neuron | 2.47e-09 | 33 |
neuronal stem cell | 2.47e-09 | 33 |
neuroblast | 2.47e-09 | 33 |
electrically signaling cell | 2.47e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.95e-23 | 95 |
ectoderm | 1.95e-23 | 95 |
presumptive ectoderm | 1.95e-23 | 95 |
central nervous system | 1.71e-22 | 73 |
nervous system | 8.03e-22 | 75 |
regional part of nervous system | 3.27e-21 | 54 |
neural tube | 4.50e-20 | 52 |
neural rod | 4.50e-20 | 52 |
future spinal cord | 4.50e-20 | 52 |
neural keel | 4.50e-20 | 52 |
neurectoderm | 1.60e-19 | 64 |
neural plate | 1.60e-19 | 64 |
presumptive neural plate | 1.60e-19 | 64 |
ecto-epithelium | 4.22e-19 | 73 |
brain | 1.62e-16 | 47 |
future brain | 1.62e-16 | 47 |
anterior neural tube | 4.48e-16 | 40 |
regional part of brain | 9.36e-16 | 46 |
regional part of forebrain | 2.21e-15 | 39 |
forebrain | 2.21e-15 | 39 |
future forebrain | 2.21e-15 | 39 |
pre-chordal neural plate | 3.54e-15 | 49 |
gray matter | 6.89e-15 | 34 |
brain grey matter | 2.59e-11 | 29 |
regional part of telencephalon | 2.59e-11 | 29 |
telencephalon | 2.59e-11 | 29 |
structure with developmental contribution from neural crest | 9.24e-11 | 92 |
occipital lobe | 3.29e-08 | 10 |
visual cortex | 3.29e-08 | 10 |
neocortex | 3.29e-08 | 10 |
regional part of cerebral cortex | 1.06e-07 | 17 |
cerebral cortex | 7.67e-07 | 21 |
cerebral hemisphere | 7.67e-07 | 21 |
pallium | 7.67e-07 | 21 |