FFCP PHASE1:Hg19::chr4:16900410..16900427,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9079 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6533 | |||
|TSSclassifier=strong | |||
|UniProt=O43679 | |||
|association_with_transcript=0bp_to_NM_001130834,NM_001290,uc003goz.2,uc003gpa.2,uc003gpb.2,uc010iee.2,uc011bxh.1_5end | |||
|cluster_id=chr4:16900410..16900427,- | |||
|coexpression_cluster_id=C1083 | |||
|description=CAGE_peak_4_at_LDB2_5end | |||
|id=chr4:16900410..16900427,- | |||
|ontology_enrichment_celltype=CL:0000055!6.23e-10!180;CL:0002139!2.92e-08!24;CL:0000057!2.71e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.08e-09;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.31e-09,24;CL:0000115,5.95e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.42e-24!115;UBERON:0005743!4.72e-21!86;UBERON:0001017!1.05e-20!82;UBERON:0000073!1.36e-20!94;UBERON:0001016!1.36e-20!94;UBERON:0001049!1.32e-17!57;UBERON:0005068!1.32e-17!57;UBERON:0006241!1.32e-17!57;UBERON:0007135!1.32e-17!57;UBERON:0002346!1.69e-17!90;UBERON:0002616!1.49e-16!59;UBERON:0000955!2.96e-16!69;UBERON:0006238!2.96e-16!69;UBERON:0003080!6.79e-16!42;UBERON:0002780!2.05e-15!41;UBERON:0001890!2.05e-15!41;UBERON:0006240!2.05e-15!41;UBERON:0003075!2.86e-15!86;UBERON:0007284!2.86e-15!86;UBERON:0001869!3.58e-15!32;UBERON:0001893!4.63e-15!34;UBERON:0002020!7.29e-15!34;UBERON:0003528!7.29e-15!34;UBERON:0002791!1.75e-14!33;UBERON:0000956!2.26e-13!25;UBERON:0000203!2.26e-13!25;UBERON:0001950!2.68e-13!20;UBERON:0000477!3.89e-13!286;UBERON:0000153!7.13e-13!129;UBERON:0007811!7.13e-13!129;UBERON:0002619!1.34e-12!22;UBERON:0004111!2.71e-12!241;UBERON:0003056!3.18e-12!61;UBERON:0000033!3.52e-12!123;UBERON:0000924!9.15e-12!173;UBERON:0006601!9.15e-12!173;UBERON:0000025!2.05e-11!194;UBERON:0004121!3.18e-10!169;UBERON:0000468!5.31e-10!659;UBERON:0000119!9.37e-10!312;UBERON:0000483!1.81e-09!309;UBERON:0000475!3.86e-09!365;UBERON:0000467!1.46e-07!625;UBERON:0002049!1.64e-07!79;UBERON:0007798!1.64e-07!79;UBERON:0000480!2.05e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;3.11e-16;20!UBERON:0002619;1.31e-15;22!UBERON:0000956;1.72e-15;25!UBERON:0000203;1.72e-15;25!UBERON:0001869;1.44e-14;32!UBERON:0001893;6.44e-14;34!UBERON:0002791;2.30e-13;32!UBERON:0003528;2.58e-13;34!UBERON:0002020;2.58e-13;34!UBERON:0002780;9.83e-11;41!UBERON:0001890;9.83e-11;41!UBERON:0000073;8.01e-08;53!UBERON:0002616;8.01e-08;53!UBERON:0001017;2.92e-07;75!UBERON:0000922;5.38e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.09e-18,114;UBERON:0001017,2.19e-17,81;UBERON:0001016,5.27e-17,89;UBERON:0001869,6.39e-17,32;UBERON:0001950,1.75e-16,20;UBERON:0001893,3.97e-16,34;UBERON:0000956,6.41e-16,25;UBERON:0000203,6.41e-16,25;UBERON:0003528,6.76e-16,34;UBERON:0002020,6.76e-16,34;UBERON:0002619,6.95e-16,22;UBERON:0002780,7.48e-16,41;UBERON:0001890,7.48e-16,41;UBERON:0003080,7.48e-16,41;UBERON:0006240,7.48e-16,41;UBERON:0002791,2.34e-15,32;UBERON:0001049,2.77e-15,56;UBERON:0005068,2.77e-15,56;UBERON:0006241,2.77e-15,56;UBERON:0007135,2.77e-15,56;UBERON:0000073,8.86e-14,53;UBERON:0002616,8.86e-14,53;UBERON:0000955,2.98e-13,68;UBERON:0006238,2.98e-13,68;UBERON:0002346,1.09e-12,86;UBERON:0003075,1.97e-10,82;UBERON:0007284,1.97e-10,82;UBERON:0004111,7.73e-10,240;UBERON:0003056,6.61e-09,61;UBERON:0000025,7.65e-09,192;UBERON:0011216,2.70e-08,223;UBERON:0004121,2.98e-08,171;UBERON:0000924,2.98e-08,171;UBERON:0006601,2.98e-08,171;UBERON:0010314,3.24e-08,132 | |||
|phase1_expression=0.908391896352783,0.428201047781966,0.845726424575827,0,1.34088328328186,3.48935409640147,0,0.631719873426831,1.04474251279935,0.491467873003018,0,0,0,0,0,0.672325146451775,1.20538905604795,0,0.487932798790507,0.61560529038394,1.02000345622126,0.313454721478088,3.43483184557268,1.91624195102038,0.87879847716362,0,0.0821005894499457,0,0,1.15148819429164,0.619264493264304,0,0,0,0.0774672005803016,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637130828648193,0.651083453856419,0,0.150575119077773,0.127986611154418,0,0,0,0.201606743224732,0,0.144824403882799,0,1.34140171940727,0.255725123687061,0.361439152384566,0,1.73815822752988,0,0.973269740605272,0.661743720148475,0.665188192387692,0.175669571386252,2.75056058545197,0,0,0,0,0,0,0,0,2.78267370313387,0,0.347140501607594,1.69592382577203,0.838998872419812,4.95212475492121,1.8809546988313,3.35941786920128,2.49036383880697,3.01248551488203,3.22263453687318,2.28081631715554,1.22031028774085,2.94130464276695,0,6.51888016473782,6.06229306090659,3.82879033643296,3.06633274931766,1.89853131913626,1.28241220751285,0,0,0,0.993943903390637,1.13967460498122,0.662045904066094,1.14734648299525,1.06400514659507,1.12135520028461,0,0,1.24484414159907,0.134710672069688,0.817309515567294,3.32986340818849,0.576175924479999,0.937285727335186,1.24864030732128,0,0.298897361103602,0.704606991862589,0,0.280901613404497,0.408308342509787,1.47401180774122,1.65321249881225,3.56400857184616,0.989067717114227,0,0.718618141816238,0.841680569770331,3.25308151667107,0.554128230968366,3.5118209670467,0.612975591598039,0.600952235626387,0.453728732640084,1.79389635688862,1.92201649936711,1.90738711043606,0.900273288253207,5.04957393268351,1.54584324027377,1.48893485065272,1.5189869901714,2.53336213419116,2.01947019395292,2.11714766877288,4.84938170456436,0.710019185033229,3.02256294682921,1.3564847384839,0,0,0,0.365921118388786,1.19276791489337,1.39432731443422,0.932949495138334,1.00928340350251,1.45990943630332,0,0,0,1.85747171212792,0,0,0,0,0,0,0,0,0,0,5.16708818237254,1.40241773803446,0.8231480226628,0,1.26755034821831,0,1.18157981336281,0,0,0.686271241194102,0,0,0,0.0925884451585296,0.651616610620649,1.03993478527958,0,0.34779121492523,0.70445216541493,3.3204282985047,3.24089858803628,1.90254152234598,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,1.86595303986695,2.01767934783746,0.6312121671319,0.190493682876507,0.763976851116555,0,0,0.102827492703324,0,0.571652865261156,1.12131084345361,1.30788020649984,0.36669142910475,1.16344544182,0,0,2.39344304926383,0,1.54324424557285,2.83698264046557,0.532844358032199,0.857867961948885,0,0,0,0,0.791951872933429,1.20575750823834,0.871533458600294,0.699810938274399,0,0,0,0.958499421966331,0,0,0,0.410952645100767,0,1.68127715990291,1.77327684181734,0.862510299438069,1.54011643535698,2.03275699377971,1.30139853857622,0.773288812777695,1.67516265334349,0.637938751653163,0,0,0,0.736148950314839,1.50051156317903,0,1.24782516918484,1.60586089917446,2.36553622550902,2.45996971484698,2.10662269809403,0,1.03473071292505,1.32845119707087,0.921845842708516,2.60650843404249,1.56640925970192,0.686286847621712,0.82707210449155,0,0,0,0,0.30239029332968,0.248107807818777,0.767309866440312,0.561320188866147,1.02511319404561,1.53512174720011,1.12597744800525,1.48418066444991,1.3878872442239,1.59805552781814,2.95657761649713,2.07701771673448,2.09178681227927,0,0,0,1.60740227430449,2.00300284807389,1.70461739447251,0,0.385076685522074,0,0,0.105551628892876,1.13733384070897,3.91215522135986,0.863663664408557,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0.256450125116389,0.328014645699706,0.976135183992909,2.26690225624989,1.92295876118521,1.07262349896764,0,0,0,2.32009723901093,1.54048617114644,2.45605879561807,1.51620229732984,1.93356440762893,2.61030049045611,1.53407929348982,1.86967274858148,0,0,0,0,1.85938219718914,0.94443704049192,0.6970372701606,0.616067160352178,0.532306030317022,0,1.11194531462352,0.143124886741991,1.48863347743867,0.316379424718726,0.190630193923825,1.02359116524534,2.56763392820352,1.27281299170375,0,0.899362287916574,1.09814811894422,0.589062011728432,0.808729926293264,0,0.842516912477962,0.975267478179181,0,0,3.68549760801562,1.83827061539827,1.13008116620243,2.75682671773062,0,0.876901770507525,2.31510213706675,3.9353685122798,0,0.30982349809975,1.12678241012897,0.143411352204052,0,0,3.19284957663538,0.844430541190656,2.96365403663912,0.75894634753143,0.349934720244983,0,0,0,1.60044461320525,0,0,0,0,0.507447609232169,0.764637207142375,0,0.238231775457789,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846458889008016,0,0,0,0,0,0,0,0,0.278406173895242,0,0,3.99686361597384,0,0,2.05111450980652,0,0,0,0,0,0,1.9882952955326,3.51673541026282,0.111308705022906,0,0,1.59398390600856,0.552567831062295,0,2.0453736500431,0,0.933118762985422,0,0,0,2.762015357834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| |||
|short_description=p4@LDB2 | |||
}} |
Latest revision as of 15:41, 16 September 2015
Short description: | p4@LDB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LDB2_5end |
Coexpression cluster: | C1083_lung_uterus_Endothelial_neuroectodermal_spleen_mesenchymal_occipital |
Association with transcript: | 0bp_to_NM_001130834, NM_001290, uc003goz.2, uc003gpa.2, uc003gpb.2, uc010iee.2, uc011bxh.1_5end |
EntrezGene: | LDB2 |
HGNC: | 6533 |
UniProt: | O43679 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.31e-09 | 24 |
endothelial cell | 5.95e-07 | 36 |