FFCP PHASE1:Mm9::chr17:56465468..56465520,+: Difference between revisions
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{{FFCP|EntrezGene=193796|HGNC=|MCL_coexpression_id=13|UniProt=Q91VY5,B0V2M9,B0V2M7,B0V2M8|association_with_transcript=0bp_to_ENSMUST00000025036,ENSMUST00000086835,ENSMUST00000139679,NM_172132,uc008dbt.2,uc008dbu.2,uc008dbv.2_5end|description=CAGE_peak_1_at_Kdm4b_5end|id=chr17:56465468..56465520,+|ontology_enrichment_celltype=CL:0000540!1.13e-12!33;CL:0000047!1.13e-12!33;CL:0000031!1.13e-12!33;CL:0000404!1.13e-12!33;CL:0000117!1.84e-12!23;CL:0000337!1.84e-12!23;CL:0000221!2.38e-10!44;CL:0000133!2.38e-10!44;CL:0002319!7.08e-10!43;CL:0000393!2.81e-09!39;CL:0000211!2.81e-09!39;CL:0000055!5.07e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.13e-12,33;CL:0000047,1.13e-12,33;CL:0000031,1.13e-12,33;CL:0000404,1.13e-12,33;CL:0000117,1.84e-12,23;CL:0000337,1.84e-12,23;CL:0000221,2.38e-10,44;CL:0000133,2.38e-10,44;CL:0002319,7.08e-10,43;CL:0000393,2.81e-09,39;CL:0000211,2.81e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.64e-23!73;UBERON:0005743!3.64e-23!73;UBERON:0000153!1.06e-22!94;UBERON:0007811!1.48e-22!86;UBERON:0000073!2.08e-21!75;UBERON:0001016!2.08e-21!75;UBERON:0000033!1.66e-19!63;UBERON:0001049!2.73e-19!52;UBERON:0005068!2.73e-19!52;UBERON:0006241!2.73e-19!52;UBERON:0007135!2.73e-19!52;UBERON:0004121!4.66e-19!102;UBERON:0000924!4.66e-19!102;UBERON:0006601!4.66e-19!102;UBERON:0002346!4.71e-18!71;UBERON:0003075!4.71e-18!71;UBERON:0007284!4.71e-18!71;UBERON:0000955!7.36e-18!50;UBERON:0006238!7.36e-18!50;UBERON:0002616!2.00e-17!49;UBERON:0003056!7.58e-17!49;UBERON:0002780!6.06e-16!39;UBERON:0001890!6.06e-16!39;UBERON:0006240!6.06e-16!39;UBERON:0003080!8.51e-16!40;UBERON:0002020!4.18e-15!34;UBERON:0002791!3.42e-12!29;UBERON:0003528!3.42e-12!29;UBERON:0001893!3.42e-12!29;UBERON:0000956!3.57e-09!21;UBERON:0001869!3.57e-09!21;UBERON:0000203!3.57e-09!21;UBERON:0000483!7.16e-08!181;UBERON:0000119!1.21e-07!183;UBERON:0002619!3.22e-07!17;UBERON:0000477!6.04e-07!154|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.64e-23,73;UBERON:0001016,2.08e-21,75;UBERON:0004121,5.17e-21,95;UBERON:0000924,5.17e-21,95;UBERON:0006601,5.17e-21,95;UBERON:0002346,9.88e-21,64;UBERON:0003075,9.88e-21,64;UBERON:0007284,9.88e-21,64;UBERON:0000073,1.76e-20,54;UBERON:0010371,6.00e-20,73;UBERON:0001049,2.73e-19,52;UBERON:0005068,2.73e-19,52;UBERON:0006241,2.73e-19,52;UBERON:0007135,2.73e-19,52;UBERON:0010314,2.99e-17,92;UBERON:0000955,4.45e-17,47;UBERON:0006238,4.45e-17,47;UBERON:0003056,7.58e-17,49;UBERON:0002616,1.19e-16,46;UBERON:0002780,6.06e-16,39;UBERON:0001890,6.06e-16,39;UBERON:0006240,6.06e-16,39;UBERON:0003080,8.51e-16,40;UBERON:0002020,4.18e-15,34;UBERON:0003528,3.42e-12,29;UBERON:0002791,3.42e-12,29;UBERON:0001893,3.42e-12,29;UBERON:0000956,3.57e-09,21;UBERON:0001869,3.57e-09,21;UBERON:0000203,3.57e-09,21;UBERON:0000483,1.70e-08,174;UBERON:0000119,2.98e-08,176;UBERON:0002619,3.22e-07,17|phase1_expression=52.849119544582,23.0323769041978,38.219936108721,32.6661348211376,41.0734498556005,27.8679591373737,27.7999042308676,35.638037269875,36.4642790372817,46.5788407380767,18.320322600129,16.0342039580626,38.5201642345213,38.5523974667779,12.9912807108108,14.3757439846776,13.2916756844348,35.0163003547644,33.1816929325888,41.590185876207,25.598030335472,23.0355006786054,18.5451850288644,14.7193028969934,16.5174682368362,26.4146703492909,18.0920038386811,17.8841123129288,13.4916627814025,18.146169342715,11.5299865540758,38.7368710810375,36.2888224674896,15.8481681015439,19.9307617628379,10.6390173029435,14.9043630071529,18.4153917524239,9.37602413428561,11.5175223674236,16.4704816648684,25.2726829434625,16.9928623560904,21.2765622378726,21.6946632809761,20.3736894899467,49.2906546939265,27.6891948603167,23.9457939180574,24.3037373842854,20.0180582924268,24.4379359420452,33.724303817605,48.5992635147601,51.0862574696545,20.0662360108039,24.6418758347331,25.2679325215947,73.0362423703148,71.4137822017244,72.2567799997044,26.0910289693232,22.2323699027785,19.3478439215501,20.7661936139065,13.4991221839759,33.2556122675429,43.0324501960141,63.5617323450968,67.0979513508503,72.5621116662268,58.2728008183759,51.2415015007743,63.4502339933462,62.0120197487989,77.2143780752418,51.7544640697127,38.4338887636415,29.03163478543,79.7912040767673,74.1964789615542,69.2814782840491,39.3648028591947,27.0126052815206,33.9212110064518,53.0331453852602,48.5487431524941,60.2070210015721,15.5238696333027,17.8348881852014,32.7546872232896,18.0689014166091,21.0791113449403,21.5881276655127,12.9955283489534,22.4013443548668,18.9599967177865,21.6446509674133,20.5230943636266,27.5604868118065,48.3092929834014,38.4979432242953,86.6337815002595,42.6640021891999,11.0410430915719,8.86759529162845,9.0994400102661,15.0722721229159,18.125651855302,20.336573051881,21.8591511725331,24.0527727866592,24.9064737036543,25.4721262533932,31.1610073909618,27.0183171358802,22.7419370315624,14.3153363350713,13.2691582792481,20.0590893934787,19.4340536245146,19.3950101254089,1.86391761218122,42.453215566674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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=193796 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q91VY5,B0V2M9,B0V2M7,B0V2M8 | |||
|association_with_transcript=0bp_to_ENSMUST00000025036,ENSMUST00000086835,ENSMUST00000139679,NM_172132,uc008dbt.2,uc008dbu.2,uc008dbv.2_5end | |||
|cluster_id=chr17:56465468..56465520,+ | |||
|description=CAGE_peak_1_at_Kdm4b_5end | |||
|id=chr17:56465468..56465520,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.13e-12!33;CL:0000047!1.13e-12!33;CL:0000031!1.13e-12!33;CL:0000404!1.13e-12!33;CL:0000117!1.84e-12!23;CL:0000337!1.84e-12!23;CL:0000221!2.38e-10!44;CL:0000133!2.38e-10!44;CL:0002319!7.08e-10!43;CL:0000393!2.81e-09!39;CL:0000211!2.81e-09!39;CL:0000055!5.07e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.13e-12,33;CL:0000047,1.13e-12,33;CL:0000031,1.13e-12,33;CL:0000404,1.13e-12,33;CL:0000117,1.84e-12,23;CL:0000337,1.84e-12,23;CL:0000221,2.38e-10,44;CL:0000133,2.38e-10,44;CL:0002319,7.08e-10,43;CL:0000393,2.81e-09,39;CL:0000211,2.81e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.64e-23!73;UBERON:0005743!3.64e-23!73;UBERON:0000153!1.06e-22!94;UBERON:0007811!1.48e-22!86;UBERON:0000073!2.08e-21!75;UBERON:0001016!2.08e-21!75;UBERON:0000033!1.66e-19!63;UBERON:0001049!2.73e-19!52;UBERON:0005068!2.73e-19!52;UBERON:0006241!2.73e-19!52;UBERON:0007135!2.73e-19!52;UBERON:0004121!4.66e-19!102;UBERON:0000924!4.66e-19!102;UBERON:0006601!4.66e-19!102;UBERON:0002346!4.71e-18!71;UBERON:0003075!4.71e-18!71;UBERON:0007284!4.71e-18!71;UBERON:0000955!7.36e-18!50;UBERON:0006238!7.36e-18!50;UBERON:0002616!2.00e-17!49;UBERON:0003056!7.58e-17!49;UBERON:0002780!6.06e-16!39;UBERON:0001890!6.06e-16!39;UBERON:0006240!6.06e-16!39;UBERON:0003080!8.51e-16!40;UBERON:0002020!4.18e-15!34;UBERON:0002791!3.42e-12!29;UBERON:0003528!3.42e-12!29;UBERON:0001893!3.42e-12!29;UBERON:0000956!3.57e-09!21;UBERON:0001869!3.57e-09!21;UBERON:0000203!3.57e-09!21;UBERON:0000483!7.16e-08!181;UBERON:0000119!1.21e-07!183;UBERON:0002619!3.22e-07!17;UBERON:0000477!6.04e-07!154 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.64e-23,73;UBERON:0001016,2.08e-21,75;UBERON:0004121,5.17e-21,95;UBERON:0000924,5.17e-21,95;UBERON:0006601,5.17e-21,95;UBERON:0002346,9.88e-21,64;UBERON:0003075,9.88e-21,64;UBERON:0007284,9.88e-21,64;UBERON:0000073,1.76e-20,54;UBERON:0010371,6.00e-20,73;UBERON:0001049,2.73e-19,52;UBERON:0005068,2.73e-19,52;UBERON:0006241,2.73e-19,52;UBERON:0007135,2.73e-19,52;UBERON:0010314,2.99e-17,92;UBERON:0000955,4.45e-17,47;UBERON:0006238,4.45e-17,47;UBERON:0003056,7.58e-17,49;UBERON:0002616,1.19e-16,46;UBERON:0002780,6.06e-16,39;UBERON:0001890,6.06e-16,39;UBERON:0006240,6.06e-16,39;UBERON:0003080,8.51e-16,40;UBERON:0002020,4.18e-15,34;UBERON:0003528,3.42e-12,29;UBERON:0002791,3.42e-12,29;UBERON:0001893,3.42e-12,29;UBERON:0000956,3.57e-09,21;UBERON:0001869,3.57e-09,21;UBERON:0000203,3.57e-09,21;UBERON:0000483,1.70e-08,174;UBERON:0000119,2.98e-08,176;UBERON:0002619,3.22e-07,17 | |||
|phase1_expression=52.849119544582,23.0323769041978,38.219936108721,32.6661348211376,41.0734498556005,27.8679591373737,27.7999042308676,35.638037269875,36.4642790372817,46.5788407380767,18.320322600129,16.0342039580626,38.5201642345213,38.5523974667779,12.9912807108108,14.3757439846776,13.2916756844348,35.0163003547644,33.1816929325888,41.590185876207,25.598030335472,23.0355006786054,18.5451850288644,14.7193028969934,16.5174682368362,26.4146703492909,18.0920038386811,17.8841123129288,13.4916627814025,18.146169342715,11.5299865540758,38.7368710810375,36.2888224674896,15.8481681015439,19.9307617628379,10.6390173029435,14.9043630071529,18.4153917524239,9.37602413428561,11.5175223674236,16.4704816648684,25.2726829434625,16.9928623560904,21.2765622378726,21.6946632809761,20.3736894899467,49.2906546939265,27.6891948603167,23.9457939180574,24.3037373842854,20.0180582924268,24.4379359420452,33.724303817605,48.5992635147601,51.0862574696545,20.0662360108039,24.6418758347331,25.2679325215947,73.0362423703148,71.4137822017244,72.2567799997044,26.0910289693232,22.2323699027785,19.3478439215501,20.7661936139065,13.4991221839759,33.2556122675429,43.0324501960141,63.5617323450968,67.0979513508503,72.5621116662268,58.2728008183759,51.2415015007743,63.4502339933462,62.0120197487989,77.2143780752418,51.7544640697127,38.4338887636415,29.03163478543,79.7912040767673,74.1964789615542,69.2814782840491,39.3648028591947,27.0126052815206,33.9212110064518,53.0331453852602,48.5487431524941,60.2070210015721,15.5238696333027,17.8348881852014,32.7546872232896,18.0689014166091,21.0791113449403,21.5881276655127,12.9955283489534,22.4013443548668,18.9599967177865,21.6446509674133,20.5230943636266,27.5604868118065,48.3092929834014,38.4979432242953,86.6337815002595,42.6640021891999,11.0410430915719,8.86759529162845,9.0994400102661,15.0722721229159,18.125651855302,20.336573051881,21.8591511725331,24.0527727866592,24.9064737036543,25.4721262533932,31.1610073909618,27.0183171358802,22.7419370315624,14.3153363350713,13.2691582792481,20.0590893934787,19.4340536245146,19.3950101254089,1.86391761218122,42.4532155666743,58.435631200954,16.6047085885584,9.94465533399138,7.19883277192089,6.35351135365323,29.5087559627501,39.3450518424019,71.7486350564456,33.5480937971094,44.4944895754775,36.362907797923,43.9673822913623,28.3113431503879,22.766475621647,37.4029682481839,25.8843482740363,30.4481836532727,28.5078609497506,27.7295679900238,36.470565916243,42.9310309644879,37.9216612043155,47.8815812500214,40.6164292060255,28.0238390812695,34.7955187508787,35.3661759569537,28.7146409480123,32.8095754086206,34.1287123191723,30.2499740519677,31.4474141573219,7.02213187313235,9.00717674901503,8.52490498186778,28.9976081549703,24.1561841780529,25.2086886045421,29.3563472125661,27.5469924446365,27.3052789810659,30.229412817553,36.7534559917478,31.0595810696671,31.2663714835613,28.7293062138417,31.1304228656086,32.8949971706998,27.0046641807992,35.1620817152174,38.6933505357994,65.2415242484663,20.4859645449955,14.5447811664949,26.6610313169042,27.1716906076713,20.3610588888907,21.3784536100743,24.9063409106255,23.0173007596197,22.7773949541366,19.9285735216053,20.6094871216221,27.65494961372,27.2949721966768,17.0775687644302,14.6973873914792,22.1046813312348,23.7084876191352,24.2206846732625,22.5415471346161,22.4016460629846,30.8384454596525,33.5950577274626,29.2785166885311,20.6654207171443,17.2698600625512,23.9390498008293,14.8226313543574,15.1829046201646,11.4004217165658,10.3436571697033,11.9687471619217,17.364755502174,11.7127891819453,14.6725030099913,22.3746612949549,12.3552635934637,5.75072826109418,16.7463426450827,23.7148631567066,20.7114679916632,15.4281775628844,25.0870631108951,24.5721742921584,26.7182890596384,26.4003261836082,23.7643120085263,30.0403517809283,31.4911763990614,31.8978478787258,46.8320754858717,29.7930422360701,27.4616215164481,40.3420564703442,35.8860659227466,29.1837619353364,28.7851626577208,19.6028669121054,27.7391898747542,17.7035138286853,19.8674457339407,26.4908473479857,30.1234034541962,12.131185957874,30.0440403373204,29.0267561862956,31.6255382880277,34.6831670349806,24.6137861891129,32.3058077419471,39.0645612488589,23.4790206971439,36.8242380968253,39.5287777946523,41.1291285019913,22.1426532924899,40.9550888434687,35.0206962610189,23.2607873391275,10.619611067197,22.3358185262583,18.1394134178851,21.8781892516842,24.2147552162234,30.4360796464488,25.8428293168221,28.3556308992454,24.5983191085458,24.018793603122,15.8127912862498,20.6271086496374,31.6608833351023,36.1922799002934,39.7131159213056,43.2960810763816,38.4828307003734,47.6244742997528,44.7573336037769,59.9795949755761,11.2642419870581,23.513359865884,36.1666572810138,27.5360042412272,33.4231363260524,26.1154964938915,28.888107248759,31.1867709515616,19.2377352175701,26.5158181875029,15.8909919142003,30.5452564585569,19.26023084645,15.6345819313894,13.6694227721025,15.5569157780435,16.8278645693917,15.534611207926,14.2345973018557,6.68269432610579,27.521231441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| |||
|short_description=p1@Kdm4b | |||
}} |
Latest revision as of 17:06, 26 September 2015
Short description: | p1@Kdm4b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kdm4b_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000025036, ENSMUST00000086835, ENSMUST00000139679, NM_172132, uc008dbt.2, uc008dbu.2, uc008dbv.2_5end |
EntrezGene: | Kdm4b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.13e-12 | 33 |
neuronal stem cell | 1.13e-12 | 33 |
neuroblast | 1.13e-12 | 33 |
electrically signaling cell | 1.13e-12 | 33 |
CNS neuron (sensu Vertebrata) | 1.84e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.84e-12 | 23 |
ectodermal cell | 2.38e-10 | 44 |
neurectodermal cell | 2.38e-10 | 44 |
neural cell | 7.08e-10 | 43 |
electrically responsive cell | 2.81e-09 | 39 |
electrically active cell | 2.81e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.64e-23 | 73 |
nervous system | 2.08e-21 | 75 |
ectoderm-derived structure | 5.17e-21 | 95 |
ectoderm | 5.17e-21 | 95 |
presumptive ectoderm | 5.17e-21 | 95 |
neurectoderm | 9.88e-21 | 64 |
neural plate | 9.88e-21 | 64 |
presumptive neural plate | 9.88e-21 | 64 |
regional part of nervous system | 1.76e-20 | 54 |
ecto-epithelium | 6.00e-20 | 73 |
neural tube | 2.73e-19 | 52 |
neural rod | 2.73e-19 | 52 |
future spinal cord | 2.73e-19 | 52 |
neural keel | 2.73e-19 | 52 |
structure with developmental contribution from neural crest | 2.99e-17 | 92 |
brain | 4.45e-17 | 47 |
future brain | 4.45e-17 | 47 |
pre-chordal neural plate | 7.58e-17 | 49 |
regional part of brain | 1.19e-16 | 46 |
regional part of forebrain | 6.06e-16 | 39 |
forebrain | 6.06e-16 | 39 |
future forebrain | 6.06e-16 | 39 |
anterior neural tube | 8.51e-16 | 40 |
gray matter | 4.18e-15 | 34 |
brain grey matter | 3.42e-12 | 29 |
regional part of telencephalon | 3.42e-12 | 29 |
telencephalon | 3.42e-12 | 29 |
cerebral cortex | 3.57e-09 | 21 |
cerebral hemisphere | 3.57e-09 | 21 |
pallium | 3.57e-09 | 21 |
epithelium | 1.70e-08 | 174 |
cell layer | 2.98e-08 | 176 |
regional part of cerebral cortex | 3.22e-07 | 17 |