FFCP PHASE1:Mm9::chr2:102240542..102240553,-: Difference between revisions
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{{FFCP|EntrezGene=80985|HGNC=|MCL_coexpression_id=145|UniProt=F7B7X2|association_with_transcript=-128bp_to_ENSMUST00000152929_5end|description=CAGE_peak_6_at_Trim44_5end|id=chr2:102240542..102240553,-|ontology_enrichment_celltype=CL:0000117!2.21e-13!23;CL:0000337!2.21e-13!23;CL:0000540!1.82e-08!33;CL:0000047!1.82e-08!33;CL:0000031!1.82e-08!33;CL:0000404!1.82e-08!33;CL:0002319!3.49e-07!43;CL:0000393!4.72e-07!39;CL:0000211!4.72e-07!39;CL:0000221!6.00e-07!44;CL:0000133!6.00e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,1.63e-27,23;CL:0000337,1.63e-27,23;CL:0000540,7.73e-18,33;CL:0000047,7.73e-18,33;CL:0000031,7.73e-18,33;CL:0000404,7.73e-18,33;CL:0002319,5.80e-16,43;CL:0000221,1.72e-15,44;CL:0000133,1.72e-15,44;CL:0000393,2.00e-14,39;CL:0000211,2.00e-14,39;CL:0002321,1.05e-12,70;CL:0002612,8.14e-08,3;CL:0002610,1.30e-07,3;CL:0002614,5.32e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.97e-13!34;UBERON:0001049!5.31e-13!52;UBERON:0005068!5.31e-13!52;UBERON:0006241!5.31e-13!52;UBERON:0007135!5.31e-13!52;UBERON:0001017!6.25e-13!73;UBERON:0005743!6.25e-13!73;UBERON:0000073!8.43e-13!75;UBERON:0001016!8.43e-13!75;UBERON:0000955!1.46e-11!50;UBERON:0006238!1.46e-11!50;UBERON:0002616!1.48e-11!49;UBERON:0000025!5.58e-11!114;UBERON:0003080!1.04e-10!40;UBERON:0002780!1.49e-10!39;UBERON:0001890!1.49e-10!39;UBERON:0006240!1.49e-10!39;UBERON:0002346!2.03e-10!71;UBERON:0003075!2.03e-10!71;UBERON:0007284!2.03e-10!71;UBERON:0002791!2.21e-10!29;UBERON:0003528!2.21e-10!29;UBERON:0001893!2.21e-10!29;UBERON:0003056!1.65e-09!49;UBERON:0000033!2.94e-09!63;UBERON:0004111!5.85e-09!122;UBERON:0004121!7.35e-09!102;UBERON:0000924!7.35e-09!102;UBERON:0006601!7.35e-09!102;UBERON:0007811!1.09e-08!86;UBERON:0000477!3.33e-08!154;UBERON:0002021!3.49e-08!10;UBERON:0000411!3.49e-08!10;UBERON:0001950!3.49e-08!10;UBERON:0000956!7.29e-08!21;UBERON:0001869!7.29e-08!21;UBERON:0000203!7.29e-08!21;UBERON:0000475!1.46e-07!200;UBERON:0002619!3.48e-07!17;UBERON:0000153!5.08e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.00e-34,34;UBERON:0000073,1.24e-25,54;UBERON:0003528,7.61e-25,29;UBERON:0002791,7.61e-25,29;UBERON:0001893,7.61e-25,29;UBERON:0002021,2.35e-23,10;UBERON:0000411,2.35e-23,10;UBERON:0001950,2.35e-23,10;UBERON:0001017,6.35e-22,73;UBERON:0001016,3.77e-21,75;UBERON:0001049,1.95e-20,52;UBERON:0005068,1.95e-20,52;UBERON:0006241,1.95e-20,52;UBERON:0007135,1.95e-20,52;UBERON:0000956,2.45e-19,21;UBERON:0001869,2.45e-19,21;UBERON:0000203,2.45e-19,21;UBERON:0002780,3.00e-17,39;UBERON:0001890,3.00e-17,39;UBERON:0006240,3.00e-17,39;UBERON:0003080,1.06e-16,40;UBERON:0002346,1.71e-15,64;UBERON:0003075,1.71e-15,64;UBERON:0007284,1.71e-15,64;UBERON:0002619,1.90e-15,17;UBERON:0004121,3.27e-15,95;UBERON:0000924,3.27e-15,95;UBERON:0006601,3.27e-15,95;UBERON:0002616,6.57e-14,46;UBERON:0000955,1.63e-13,47;UBERON:0006238,1.63e-13,47;UBERON:0010371,7.34e-13,73;UBERON:0003056,8.99e-13,49;UBERON:0001948,1.12e-11,5;UBERON:0002315,1.12e-11,5;UBERON:0000025,2.08e-10,114;UBERON:0010314,5.98e-10,92;UBERON:0002240,1.16e-09,6;UBERON:0005174,1.16e-09,6;UBERON:0001137,1.16e-09,6;UBERON:0004111,2.77e-09,122;UBERON:0002257,8.14e-08,3;UBERON:0011216,8.18e-08,194;UBERON:0004684,1.30e-07,3;UBERON:0002275,1.30e-07,3;UBERON:0002038,5.32e-07,3;UBERON:0009663,5.32e-07,3;UBERON:0009661,5.32e-07,3;UBERON:0000125,5.32e-07,3;UBERON:0002308,5.32e-07,3|phase1_expression=0.320297694209588,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0.171217968225505,0.398860794976682,0.513602189793617,0.262261207256992,0.333109761815663,0,0.699561878128147,0.630924330716475,0,0.42438965179803,0.255129870453209,0.297872853602656,0.783599367416806,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0.304130793658544,0,0,0.218025156380447,0,0.58328969722285,0.139986421625363,1.43752564364972,0.335565212115473,0,0,0,0.286533439938757,0.515672092277442,1.41621522601718,0.528990979272033,0.633831403506179,0.677689064138264,0,0.449949858640699,0,0.7104801149461,0,1.53687322128622,2.48855069540346,2.02508907497536,1.05162480675691,2.57085885963423,1.98781686856452,0.489963196859816,2.1086003624012,0.919218786610021,4.40463523997555,2.55374676170375,1.99688493233117,1.97829431595291,2.92760459527711,0.52091337055676,2.23346399201105,1.12552522006336,2.29197371665215,6.18720029494702,5.97961059356232,1.86399445825301,0.37863096666592,0.151143120213571,0.289864488701678,0,0.679971333707751,0.539703191637817,1.29955283489534,1.79210754838934,0,0,0,0.35333957451034,0.14084341977668,0,2.54805239706646,7.11066703153331,0.432982082022428,0.506719730950197,0.505524445014783,0.11418387971906,0.258937883647172,0,0.346970653532272,0.304465478312141,0,0.150722640552623,0.705532242814229,0.502666365318702,0.247194967734374,0.289198713839823,0,0.161766849947409,0.220841518460394,0.484875253135222,0,0.292780797011547,0.41889341362691,0,0.239630249011841,0.599902730993408,0,0.449371918214468,0,0.75392611267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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=80985 | |||
|HGNC= | |||
|MCL_coexpression_id=145 | |||
|TSSclassifier=NA | |||
|UniProt=F7B7X2 | |||
|association_with_transcript=-128bp_to_ENSMUST00000152929_5end | |||
|cluster_id=chr2:102240542..102240553,- | |||
|description=CAGE_peak_6_at_Trim44_5end | |||
|id=chr2:102240542..102240553,- | |||
|ontology_enrichment_celltype=CL:0000117!2.21e-13!23;CL:0000337!2.21e-13!23;CL:0000540!1.82e-08!33;CL:0000047!1.82e-08!33;CL:0000031!1.82e-08!33;CL:0000404!1.82e-08!33;CL:0002319!3.49e-07!43;CL:0000393!4.72e-07!39;CL:0000211!4.72e-07!39;CL:0000221!6.00e-07!44;CL:0000133!6.00e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.63e-27,23;CL:0000337,1.63e-27,23;CL:0000540,7.73e-18,33;CL:0000047,7.73e-18,33;CL:0000031,7.73e-18,33;CL:0000404,7.73e-18,33;CL:0002319,5.80e-16,43;CL:0000221,1.72e-15,44;CL:0000133,1.72e-15,44;CL:0000393,2.00e-14,39;CL:0000211,2.00e-14,39;CL:0002321,1.05e-12,70;CL:0002612,8.14e-08,3;CL:0002610,1.30e-07,3;CL:0002614,5.32e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.97e-13!34;UBERON:0001049!5.31e-13!52;UBERON:0005068!5.31e-13!52;UBERON:0006241!5.31e-13!52;UBERON:0007135!5.31e-13!52;UBERON:0001017!6.25e-13!73;UBERON:0005743!6.25e-13!73;UBERON:0000073!8.43e-13!75;UBERON:0001016!8.43e-13!75;UBERON:0000955!1.46e-11!50;UBERON:0006238!1.46e-11!50;UBERON:0002616!1.48e-11!49;UBERON:0000025!5.58e-11!114;UBERON:0003080!1.04e-10!40;UBERON:0002780!1.49e-10!39;UBERON:0001890!1.49e-10!39;UBERON:0006240!1.49e-10!39;UBERON:0002346!2.03e-10!71;UBERON:0003075!2.03e-10!71;UBERON:0007284!2.03e-10!71;UBERON:0002791!2.21e-10!29;UBERON:0003528!2.21e-10!29;UBERON:0001893!2.21e-10!29;UBERON:0003056!1.65e-09!49;UBERON:0000033!2.94e-09!63;UBERON:0004111!5.85e-09!122;UBERON:0004121!7.35e-09!102;UBERON:0000924!7.35e-09!102;UBERON:0006601!7.35e-09!102;UBERON:0007811!1.09e-08!86;UBERON:0000477!3.33e-08!154;UBERON:0002021!3.49e-08!10;UBERON:0000411!3.49e-08!10;UBERON:0001950!3.49e-08!10;UBERON:0000956!7.29e-08!21;UBERON:0001869!7.29e-08!21;UBERON:0000203!7.29e-08!21;UBERON:0000475!1.46e-07!200;UBERON:0002619!3.48e-07!17;UBERON:0000153!5.08e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.00e-34,34;UBERON:0000073,1.24e-25,54;UBERON:0003528,7.61e-25,29;UBERON:0002791,7.61e-25,29;UBERON:0001893,7.61e-25,29;UBERON:0002021,2.35e-23,10;UBERON:0000411,2.35e-23,10;UBERON:0001950,2.35e-23,10;UBERON:0001017,6.35e-22,73;UBERON:0001016,3.77e-21,75;UBERON:0001049,1.95e-20,52;UBERON:0005068,1.95e-20,52;UBERON:0006241,1.95e-20,52;UBERON:0007135,1.95e-20,52;UBERON:0000956,2.45e-19,21;UBERON:0001869,2.45e-19,21;UBERON:0000203,2.45e-19,21;UBERON:0002780,3.00e-17,39;UBERON:0001890,3.00e-17,39;UBERON:0006240,3.00e-17,39;UBERON:0003080,1.06e-16,40;UBERON:0002346,1.71e-15,64;UBERON:0003075,1.71e-15,64;UBERON:0007284,1.71e-15,64;UBERON:0002619,1.90e-15,17;UBERON:0004121,3.27e-15,95;UBERON:0000924,3.27e-15,95;UBERON:0006601,3.27e-15,95;UBERON:0002616,6.57e-14,46;UBERON:0000955,1.63e-13,47;UBERON:0006238,1.63e-13,47;UBERON:0010371,7.34e-13,73;UBERON:0003056,8.99e-13,49;UBERON:0001948,1.12e-11,5;UBERON:0002315,1.12e-11,5;UBERON:0000025,2.08e-10,114;UBERON:0010314,5.98e-10,92;UBERON:0002240,1.16e-09,6;UBERON:0005174,1.16e-09,6;UBERON:0001137,1.16e-09,6;UBERON:0004111,2.77e-09,122;UBERON:0002257,8.14e-08,3;UBERON:0011216,8.18e-08,194;UBERON:0004684,1.30e-07,3;UBERON:0002275,1.30e-07,3;UBERON:0002038,5.32e-07,3;UBERON:0009663,5.32e-07,3;UBERON:0009661,5.32e-07,3;UBERON:0000125,5.32e-07,3;UBERON:0002308,5.32e-07,3 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0.171217968225505,0.398860794976682,0.513602189793617,0.262261207256992,0.333109761815663,0,0.699561878128147,0.630924330716475,0,0.42438965179803,0.255129870453209,0.297872853602656,0.783599367416806,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0.304130793658544,0,0,0.218025156380447,0,0.58328969722285,0.139986421625363,1.43752564364972,0.335565212115473,0,0,0,0.286533439938757,0.515672092277442,1.41621522601718,0.528990979272033,0.633831403506179,0.677689064138264,0,0.449949858640699,0,0.7104801149461,0,1.53687322128622,2.48855069540346,2.02508907497536,1.05162480675691,2.57085885963423,1.98781686856452,0.489963196859816,2.1086003624012,0.919218786610021,4.40463523997555,2.55374676170375,1.99688493233117,1.97829431595291,2.92760459527711,0.52091337055676,2.23346399201105,1.12552522006336,2.29197371665215,6.18720029494702,5.97961059356232,1.86399445825301,0.37863096666592,0.151143120213571,0.289864488701678,0,0.679971333707751,0.539703191637817,1.29955283489534,1.79210754838934,0,0,0,0.35333957451034,0.14084341977668,0,2.54805239706646,7.11066703153331,0.432982082022428,0.506719730950197,0.505524445014783,0.11418387971906,0.258937883647172,0,0.346970653532272,0.304465478312141,0,0.150722640552623,0.705532242814229,0.502666365318702,0.247194967734374,0.289198713839823,0,0.161766849947409,0.220841518460394,0.484875253135222,0,0.292780797011547,0.41889341362691,0,0.239630249011841,0.599902730993408,0,0.449371918214468,0,0.753926112677186,0,1.27857728665165,0.41557608911912,0.324482526135515,0.305518091550949,0.124406970610093,0.505445516867349,0,0.130120442962704,0.229902104433473,0,0.60281927134286,0.340182495756639,0.384341160854549,0.281105173679186,0.517406741478031,0,0,0.175951124163949,0,0.278047249225598,0,0.205782136407943,0,0,0,0,0,1.17263029990548,0.540186184383045,0.23674473558521,0.787056926989615,0.308534225774757,0.232533944750408,0.268273401399619,0.350296027101508,0.493679549740441,0.820837320395476,0.0810688095458557,0.438599962275997,0,0,0.210289948564127,0.102904612379284,0,0,0.213288250535234,0.928946687441754,0,0.201683524623343,0.22237804384487,0,0.474529061544512,0.329397909448022,0,0.397912944082302,0.19496408711912,0,0,0.199141273254367,0,0.456994050438915,0,0.407302655690628,0.193952487167626,0.631222379012867,0.379419222745544,0.885660887877613,0.156998727841375,0.370191491765402,0,0.166845105716094,0,0.449724224769707,0,0,0,0,0.810676133875177,0.823684239564244,7.18841032636773,0,0.312037673114561,0,0,0.482443521363367,0.369506380333209,0.189491411770485,0,0.509235257325564,0.704070744865506,0.167506257441816,0,0.585400943573396,0.630540576424764,0.8858587585951,1.2756381492599,0.327726629431476,0.518054945597687,0.289298117163023,0,0,0,0,0.160550589987792,0.586058432961016,0,0,0,0,0.646270193198397,0.238968797952552,0.222798674082394,0,0.404810701674894,0,0,0.321321316421807,0,0.178065603667255,0.162886959353576,0.164970122972535,0,0.728341908464944,0.302323556964751,0,0,0,0.258428293168221,0.363533729477506,0.712994756769443,1.58018378967908,1.05418608574999,0,0,0.540183282093931,0.388076051348264,0,0.354680467284547,0.891844088010353,0.822745103010605,0.913394847343798,0.23467170806371,0.42366414172764,0.220528398054962,0.32977250588296,0.161464426695906,0.120625849856312,0.119372344003136,0,0,0.556275906031529,0,0,0.370389054739423,0.188368457004691,0.136694227721025,0.457556346413045,0.169978429993855,0,0.276399947608848,0,0,0,0.540026704109006,0.627264888043406,0.436725127492355,0.404593039154462,0.247960367176008,0,0.259229946583586,0,0.56369293868419,0.149516546043979,0,0,0,0.675824501963113,0.352071715937262,0,0.209718688851422,0.241584120826006,0.288030006257865,0,0,0.513554785824136,0.909445760844565,0.179026695667481,0.39736270956253,0,0.147689527174577,0.504832249740738,0.228620419965,0.302478555410522,0.0974578807397524,0.384847366561318,0.584384510907845,0,0,0.0897138566094757,0,0,0,0,0,0,7.90652579663893,4.60325236507177,8.59343270159095,1.89038500578056,2.74033007908257,4.5323633843382,4.05013500139084,6.30449684513909,6.34399372577886,4.14208249401456,0.31136204275253,0.399024873401031,0.170733605754134,0.243106717068294,0.209613162627982,0,0,0.206035057238894,0,0.505394423527595,0,0.188626341386076,0.468207537349412,0.128050304809739,0.287177344778066,0,0.115884325944855,0.38581844092741,0.412085900803307,0.588795680537589,0.342869252385415,0.354951612318675,0.476872379894642,0,0.282328141245992,0,0,0.526139422875686,0.679020569229309,0,0.237270036248348,0.0985044823755635,1.63692417267876,0.309873682371932,0.192906610981141,0.249810577937946,0,0.214871054048298,0.191288332068843,0,0 | |||
|short_description=p6@Trim44 | |||
}} |
Latest revision as of 21:09, 1 October 2015
Short description: | p6@Trim44 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Trim44_5end |
Coexpression cluster: | MCL_coexpression_mm9:145 |
Association with transcript: | -128bp_to_ENSMUST00000152929_5end |
EntrezGene: | Trim44 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.63e-27 | 23 |
neuroblast (sensu Vertebrata) | 1.63e-27 | 23 |
neuron | 7.73e-18 | 33 |
neuronal stem cell | 7.73e-18 | 33 |
neuroblast | 7.73e-18 | 33 |
electrically signaling cell | 7.73e-18 | 33 |
neural cell | 5.80e-16 | 43 |
ectodermal cell | 1.72e-15 | 44 |
neurectodermal cell | 1.72e-15 | 44 |
electrically responsive cell | 2.00e-14 | 39 |
electrically active cell | 2.00e-14 | 39 |
embryonic cell | 1.05e-12 | 70 |
neuron of the ventral spinal cord | 8.14e-08 | 3 |
raphe nuclei neuron | 1.30e-07 | 3 |
neuron of the substantia nigra | 5.32e-07 | 3 |