FFCP PHASE1:Mm9::chr6:107479790..107479801,+: Difference between revisions
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{{FFCP|EntrezGene=16979|HGNC=|MCL_coexpression_id=237|UniProt=Q61809|association_with_transcript=11bp_to_ENSMUST00000049285,uc009ddd.1_5end|description=CAGE_peak_2_at_Lrrn1_5end|id=chr6:107479790..107479801,+|ontology_enrichment_celltype=CL:0000540!1.81e-13!33;CL:0000047!1.81e-13!33;CL:0000031!1.81e-13!33;CL:0000404!1.81e-13!33;CL:0000117!3.47e-13!23;CL:0000337!3.47e-13!23;CL:0000221!4.08e-10!44;CL:0000133!4.08e-10!44;CL:0002319!5.99e-10!43;CL:0000393!2.94e-09!39;CL:0000211!2.94e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,5.40e-15,23;CL:0000337,5.40e-15,23;CL:0000540,2.79e-13,33;CL:0000047,2.79e-13,33;CL:0000031,2.79e-13,33;CL:0000404,2.79e-13,33;CL:0000393,5.46e-10,39;CL:0000211,5.46e-10,39;CL:0002319,2.39e-08,43;CL:0000221,5.46e-08,44;CL:0000133,5.46e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.46e-22!102;UBERON:0000924!2.46e-22!102;UBERON:0006601!2.46e-22!102;UBERON:0001017!9.73e-22!73;UBERON:0005743!9.73e-22!73;UBERON:0000073!3.66e-21!75;UBERON:0001016!3.66e-21!75;UBERON:0002346!1.82e-19!71;UBERON:0003075!1.82e-19!71;UBERON:0007284!1.82e-19!71;UBERON:0001049!5.92e-17!52;UBERON:0005068!5.92e-17!52;UBERON:0006241!5.92e-17!52;UBERON:0007135!5.92e-17!52;UBERON:0000033!1.81e-16!63;UBERON:0000955!1.63e-15!50;UBERON:0006238!1.63e-15!50;UBERON:0002616!5.71e-15!49;UBERON:0003056!7.60e-13!49;UBERON:0002020!4.11e-12!34;UBERON:0003080!5.59e-11!40;UBERON:0002780!1.92e-10!39;UBERON:0001890!1.92e-10!39;UBERON:0006240!1.92e-10!39;UBERON:0000153!4.15e-10!94;UBERON:0002791!5.56e-09!29;UBERON:0003528!5.56e-09!29;UBERON:0001893!5.56e-09!29;UBERON:0007811!5.90e-08!86;UBERON:0003076!3.28e-07!12;UBERON:0003057!3.28e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.42e-20,73;UBERON:0000073,4.52e-20,54;UBERON:0001016,1.37e-19,75;UBERON:0001049,2.96e-18,52;UBERON:0005068,2.96e-18,52;UBERON:0006241,2.96e-18,52;UBERON:0007135,2.96e-18,52;UBERON:0002346,6.82e-17,64;UBERON:0003075,6.82e-17,64;UBERON:0007284,6.82e-17,64;UBERON:0002020,3.09e-16,34;UBERON:0004121,4.70e-16,95;UBERON:0000924,4.70e-16,95;UBERON:0006601,4.70e-16,95;UBERON:0010371,4.33e-14,73;UBERON:0000955,9.14e-14,47;UBERON:0006238,9.14e-14,47;UBERON:0002616,4.35e-13,46;UBERON:0003528,8.88e-12,29;UBERON:0002791,8.88e-12,29;UBERON:0001893,8.88e-12,29;UBERON:0003080,8.19e-11,40;UBERON:0003056,2.51e-10,49;UBERON:0002780,3.93e-10,39;UBERON:0001890,3.93e-10,39;UBERON:0006240,3.93e-10,39;UBERON:0003076,4.12e-09,12;UBERON:0003057,4.12e-09,12;UBERON:0010314,7.84e-09,92;UBERON:0002240,1.64e-07,6;UBERON:0005174,1.64e-07,6;UBERON:0001137,1.64e-07,6;UBERON:0002619,4.02e-07,17;UBERON:0000956,4.99e-07,21;UBERON:0001869,4.99e-07,21;UBERON:0000203,4.99e-07,21|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0,0,0.139986421625363,0,0,0,0,0,0,0,4.24864567805155,0.528990979272033,3.80298842103708,0,0,0,0,0,0.299600110518405,0.384218305321555,0.933206510776299,1.35005938331691,0.420649922702764,2.57085885963423,3.75476519617743,2.81728838194394,1.53352753629178,1.83843757322004,3.30347642998166,3.95830748064082,3.84016333140609,1.05509030184155,1.00636407962651,2.6045668527838,7.2587579740359,3.93933827022176,2.75036845998258,2.94628585473668,4.27115042397309,3.16879057903011,0,0.453429360640713,0,0,0,0,0,0,0.140444420131752,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0.593768556259299,1.04091196059682,0.913396434936424,0.230615497256059,0,0.117588707135705,1.0053327306374,0,0.144599356919912,0,2.10296904931632,0,0,0,2.63502717310392,3.56059401582874,0,0,0,0,2.54644086988199,1.37250180845588,1.25654352112864,2.08589184230732,2.30143911597297,2.28566849015516,4.38051410282946,0.305518091550949,0.124406970610093,0,0.420883711772948,0.390361328888111,1.14951052216736,1.62055916824814,1.05493372485001,1.49680298132921,0.512454881139399,0.749613796477831,0.517406741478031,1.72454394346274,2.83659120251729,2.28736461413134,2.41115305670332,1.39023624612799,2.089512999133,0.61734640922383,1.19420560091096,0,0,0,0.207125772535502,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0.146199987425332,0,0,2.73376933133365,1.13195073617213,0,0,0,0,0.128867461322093,0,0.22237804384487,0.380451252225118,0,0.658795818896044,0,0.994782360205754,0.58489226135736,0,0,0,0.189667900953082,0.228497025219458,1.1270773567308,0.203651327845314,0,0.0701358198903186,0.0632365371242573,0.147610147979602,0,0,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0.37898282354097,0,0.169745085775188,0,0.167506257441816,0.476087281772027,0.390267295715598,0.315270288212382,0,0,0.163863314715738,0,0,0,0,0,0,4.49541651965817,10.3146284201139,0,0.504941854408746,0.315508219416257,0.390438744296638,1.29254038639679,0,1.11399337041197,1.41538265394416,1.61924280669958,0.292255857911312,1.18586333383957,2.24924921495265,2.6968616189571,0.712262414669021,0.977321756121456,0.164970122972535,0,0,0,0.188605079755898,0,0.307435147943927,0,0,0.356497378384721,0.316036757935816,0,0,0.680879211507576,0.36012218806262,0.517434735131018,0.428674070063185,0,0.713475270408282,1.81003922662333,0.304464949114599,0,0,0,0.8244312647074,1.77610869365496,0.904693873922338,0.477489376012546,0.328281799490123,0,5.93360966433631,0.170870880797853,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.216010681643603,0,0,0,0.165306911450672,0.26175594198403,0,0,0,0.299033092087958,0.496375471371293,0,0.129159823477731,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0.100966449948148,0.0762068066549998,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0.501572104035363,2.25900737046827,1.84130094602871,3.43737308063638,2.92150409984269,0,2.2661816921691,1.35004500046361,1.80128481289688,0,1.55328093525546,1.14166082342594,2.79317411380722,1.70733605754134,2.43106717068294,1.67690530102386,1.47074806760011,1.33348036680969,1.23621034343337,1.60459604795908,1.51618327058278,1.52087579934144,1.50901073108861,1.591905626988,1.02440243847791,1.49332219284595,2.85776214769844,2.54945517078682,1.54327376370964,0.824171801606613,1.32479028120958,1.37147700954166,1.24233064311536,1.1921809497366,1.74415699958794,1.88218760830661,1.26921911837515,0.914639864363863,1.57841826862706,1.62964936615034,5.05028044491965,1.30498519936592,1.67457620038458,0,1.39443157067369,0.964533054905707,1.49886346762768,1.40358965067245,0.644613162144895,3.25190164517034,1.76473135295612,1.39120701372253|short_description=p2@Lrrn1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16979 | |||
|HGNC= | |||
|MCL_coexpression_id=237 | |||
|TSSclassifier=NA | |||
|UniProt=Q61809 | |||
|association_with_transcript=11bp_to_ENSMUST00000049285,uc009ddd.1_5end | |||
|cluster_id=chr6:107479790..107479801,+ | |||
|description=CAGE_peak_2_at_Lrrn1_5end | |||
|id=chr6:107479790..107479801,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.81e-13!33;CL:0000047!1.81e-13!33;CL:0000031!1.81e-13!33;CL:0000404!1.81e-13!33;CL:0000117!3.47e-13!23;CL:0000337!3.47e-13!23;CL:0000221!4.08e-10!44;CL:0000133!4.08e-10!44;CL:0002319!5.99e-10!43;CL:0000393!2.94e-09!39;CL:0000211!2.94e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.40e-15,23;CL:0000337,5.40e-15,23;CL:0000540,2.79e-13,33;CL:0000047,2.79e-13,33;CL:0000031,2.79e-13,33;CL:0000404,2.79e-13,33;CL:0000393,5.46e-10,39;CL:0000211,5.46e-10,39;CL:0002319,2.39e-08,43;CL:0000221,5.46e-08,44;CL:0000133,5.46e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.46e-22!102;UBERON:0000924!2.46e-22!102;UBERON:0006601!2.46e-22!102;UBERON:0001017!9.73e-22!73;UBERON:0005743!9.73e-22!73;UBERON:0000073!3.66e-21!75;UBERON:0001016!3.66e-21!75;UBERON:0002346!1.82e-19!71;UBERON:0003075!1.82e-19!71;UBERON:0007284!1.82e-19!71;UBERON:0001049!5.92e-17!52;UBERON:0005068!5.92e-17!52;UBERON:0006241!5.92e-17!52;UBERON:0007135!5.92e-17!52;UBERON:0000033!1.81e-16!63;UBERON:0000955!1.63e-15!50;UBERON:0006238!1.63e-15!50;UBERON:0002616!5.71e-15!49;UBERON:0003056!7.60e-13!49;UBERON:0002020!4.11e-12!34;UBERON:0003080!5.59e-11!40;UBERON:0002780!1.92e-10!39;UBERON:0001890!1.92e-10!39;UBERON:0006240!1.92e-10!39;UBERON:0000153!4.15e-10!94;UBERON:0002791!5.56e-09!29;UBERON:0003528!5.56e-09!29;UBERON:0001893!5.56e-09!29;UBERON:0007811!5.90e-08!86;UBERON:0003076!3.28e-07!12;UBERON:0003057!3.28e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.42e-20,73;UBERON:0000073,4.52e-20,54;UBERON:0001016,1.37e-19,75;UBERON:0001049,2.96e-18,52;UBERON:0005068,2.96e-18,52;UBERON:0006241,2.96e-18,52;UBERON:0007135,2.96e-18,52;UBERON:0002346,6.82e-17,64;UBERON:0003075,6.82e-17,64;UBERON:0007284,6.82e-17,64;UBERON:0002020,3.09e-16,34;UBERON:0004121,4.70e-16,95;UBERON:0000924,4.70e-16,95;UBERON:0006601,4.70e-16,95;UBERON:0010371,4.33e-14,73;UBERON:0000955,9.14e-14,47;UBERON:0006238,9.14e-14,47;UBERON:0002616,4.35e-13,46;UBERON:0003528,8.88e-12,29;UBERON:0002791,8.88e-12,29;UBERON:0001893,8.88e-12,29;UBERON:0003080,8.19e-11,40;UBERON:0003056,2.51e-10,49;UBERON:0002780,3.93e-10,39;UBERON:0001890,3.93e-10,39;UBERON:0006240,3.93e-10,39;UBERON:0003076,4.12e-09,12;UBERON:0003057,4.12e-09,12;UBERON:0010314,7.84e-09,92;UBERON:0002240,1.64e-07,6;UBERON:0005174,1.64e-07,6;UBERON:0001137,1.64e-07,6;UBERON:0002619,4.02e-07,17;UBERON:0000956,4.99e-07,21;UBERON:0001869,4.99e-07,21;UBERON:0000203,4.99e-07,21 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0,0,0.139986421625363,0,0,0,0,0,0,0,4.24864567805155,0.528990979272033,3.80298842103708,0,0,0,0,0,0.299600110518405,0.384218305321555,0.933206510776299,1.35005938331691,0.420649922702764,2.57085885963423,3.75476519617743,2.81728838194394,1.53352753629178,1.83843757322004,3.30347642998166,3.95830748064082,3.84016333140609,1.05509030184155,1.00636407962651,2.6045668527838,7.2587579740359,3.93933827022176,2.75036845998258,2.94628585473668,4.27115042397309,3.16879057903011,0,0.453429360640713,0,0,0,0,0,0,0.140444420131752,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0.593768556259299,1.04091196059682,0.913396434936424,0.230615497256059,0,0.117588707135705,1.0053327306374,0,0.144599356919912,0,2.10296904931632,0,0,0,2.63502717310392,3.56059401582874,0,0,0,0,2.54644086988199,1.37250180845588,1.25654352112864,2.08589184230732,2.30143911597297,2.28566849015516,4.38051410282946,0.305518091550949,0.124406970610093,0,0.420883711772948,0.390361328888111,1.14951052216736,1.62055916824814,1.05493372485001,1.49680298132921,0.512454881139399,0.749613796477831,0.517406741478031,1.72454394346274,2.83659120251729,2.28736461413134,2.41115305670332,1.39023624612799,2.089512999133,0.61734640922383,1.19420560091096,0,0,0,0.207125772535502,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0.146199987425332,0,0,2.73376933133365,1.13195073617213,0,0,0,0,0.128867461322093,0,0.22237804384487,0.380451252225118,0,0.658795818896044,0,0.994782360205754,0.58489226135736,0,0,0,0.189667900953082,0.228497025219458,1.1270773567308,0.203651327845314,0,0.0701358198903186,0.0632365371242573,0.147610147979602,0,0,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0.37898282354097,0,0.169745085775188,0,0.167506257441816,0.476087281772027,0.390267295715598,0.315270288212382,0,0,0.163863314715738,0,0,0,0,0,0,4.49541651965817,10.3146284201139,0,0.504941854408746,0.315508219416257,0.390438744296638,1.29254038639679,0,1.11399337041197,1.41538265394416,1.61924280669958,0.292255857911312,1.18586333383957,2.24924921495265,2.6968616189571,0.712262414669021,0.977321756121456,0.164970122972535,0,0,0,0.188605079755898,0,0.307435147943927,0,0,0.356497378384721,0.316036757935816,0,0,0.680879211507576,0.36012218806262,0.517434735131018,0.428674070063185,0,0.713475270408282,1.81003922662333,0.304464949114599,0,0,0,0.8244312647074,1.77610869365496,0.904693873922338,0.477489376012546,0.328281799490123,0,5.93360966433631,0.170870880797853,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.216010681643603,0,0,0,0.165306911450672,0.26175594198403,0,0,0,0.299033092087958,0.496375471371293,0,0.129159823477731,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0.100966449948148,0.0762068066549998,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0.501572104035363,2.25900737046827,1.84130094602871,3.43737308063638,2.92150409984269,0,2.2661816921691,1.35004500046361,1.80128481289688,0,1.55328093525546,1.14166082342594,2.79317411380722,1.70733605754134,2.43106717068294,1.67690530102386,1.47074806760011,1.33348036680969,1.23621034343337,1.60459604795908,1.51618327058278,1.52087579934144,1.50901073108861,1.591905626988,1.02440243847791,1.49332219284595,2.85776214769844,2.54945517078682,1.54327376370964,0.824171801606613,1.32479028120958,1.37147700954166,1.24233064311536,1.1921809497366,1.74415699958794,1.88218760830661,1.26921911837515,0.914639864363863,1.57841826862706,1.62964936615034,5.05028044491965,1.30498519936592,1.67457620038458,0,1.39443157067369,0.964533054905707,1.49886346762768,1.40358965067245,0.644613162144895,3.25190164517034,1.76473135295612,1.39120701372253 | |||
|short_description=p2@Lrrn1 | |||
}} |
Latest revision as of 10:39, 26 September 2015
Short description: | p2@Lrrn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Lrrn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:237 |
Association with transcript: | 11bp_to_ENSMUST00000049285, uc009ddd.1_5end |
EntrezGene: | Lrrn1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.40e-15 | 23 |
neuroblast (sensu Vertebrata) | 5.40e-15 | 23 |
neuron | 2.79e-13 | 33 |
neuronal stem cell | 2.79e-13 | 33 |
neuroblast | 2.79e-13 | 33 |
electrically signaling cell | 2.79e-13 | 33 |
electrically responsive cell | 5.46e-10 | 39 |
electrically active cell | 5.46e-10 | 39 |
neural cell | 2.39e-08 | 43 |
ectodermal cell | 5.46e-08 | 44 |
neurectodermal cell | 5.46e-08 | 44 |