FFCP PHASE1:Mm9::chr8:40068881..40068920,+: Difference between revisions
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{{FFCP|EntrezGene=80286|HGNC=|MCL_coexpression_id=60|UniProt=E9Q0P4,Q8BTV1|association_with_transcript=0bp_to_ENSMUST00000035739,ENSMUST00000167992,NM_030254,uc009lmf.1,uc009lmg.1,uc009lmh.1_5end|description=CAGE_peak_2_at_Tusc3_5end|id=chr8:40068881..40068920,+|ontology_enrichment_celltype=CL:0000117!1.25e-11!23;CL:0000337!1.25e-11!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.25e-11,23;CL:0000337,1.25e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!5.03e-22!49;UBERON:0001049!1.30e-21!52;UBERON:0005068!1.30e-21!52;UBERON:0006241!1.30e-21!52;UBERON:0007135!1.30e-21!52;UBERON:0000033!2.12e-21!63;UBERON:0002346!1.40e-20!71;UBERON:0003075!1.40e-20!71;UBERON:0007284!1.40e-20!71;UBERON:0000955!1.16e-19!50;UBERON:0006238!1.16e-19!50;UBERON:0003080!2.52e-19!40;UBERON:0002616!4.30e-19!49;UBERON:0002780!8.79e-19!39;UBERON:0001890!8.79e-19!39;UBERON:0006240!8.79e-19!39;UBERON:0001017!3.71e-18!73;UBERON:0005743!3.71e-18!73;UBERON:0000073!1.04e-17!75;UBERON:0001016!1.04e-17!75;UBERON:0002020!1.08e-17!34;UBERON:0007811!1.88e-17!86;UBERON:0000153!2.19e-17!94;UBERON:0002791!2.40e-14!29;UBERON:0003528!2.40e-14!29;UBERON:0001893!2.40e-14!29;UBERON:0004121!3.48e-13!102;UBERON:0000924!3.48e-13!102;UBERON:0006601!3.48e-13!102;UBERON:0000956!5.27e-10!21;UBERON:0001869!5.27e-10!21;UBERON:0000203!5.27e-10!21;UBERON:0002619!1.16e-08!17;UBERON:0002021!2.45e-07!10;UBERON:0000411!2.45e-07!10;UBERON:0001950!2.45e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.90e-23,64;UBERON:0003075,5.90e-23,64;UBERON:0007284,5.90e-23,64;UBERON:0000073,1.51e-22,54;UBERON:0003056,5.03e-22,49;UBERON:0001049,1.30e-21,52;UBERON:0005068,1.30e-21,52;UBERON:0006241,1.30e-21,52;UBERON:0007135,1.30e-21,52;UBERON:0003080,2.52e-19,40;UBERON:0002780,8.79e-19,39;UBERON:0001890,8.79e-19,39;UBERON:0006240,8.79e-19,39;UBERON:0000955,1.19e-18,47;UBERON:0006238,1.19e-18,47;UBERON:0001017,3.71e-18,73;UBERON:0002616,4.33e-18,46;UBERON:0001016,1.04e-17,75;UBERON:0002020,1.08e-17,34;UBERON:0010371,1.64e-17,73;UBERON:0010314,6.99e-17,92;UBERON:0003528,2.40e-14,29;UBERON:0002791,2.40e-14,29;UBERON:0001893,2.40e-14,29;UBERON:0004121,3.07e-14,95;UBERON:0000924,3.07e-14,95;UBERON:0006601,3.07e-14,95;UBERON:0000956,5.27e-10,21;UBERON:0001869,5.27e-10,21;UBERON:0000203,5.27e-10,21;UBERON:0002619,1.16e-08,17;UBERON:0002021,2.45e-07,10;UBERON:0000411,2.45e-07,10;UBERON:0001950,2.45e-07,10|phase1_expression=17.4562243344225,1.04692622291808,2.27499619694768,1.51232105653415,0.500895729946347,5.70789524500425,6.30754129607919,17.5607719880544,6.89864738543167,8.89445200023575,22.4295538375412,14.9971658911232,14.2096605842901,17.6589212886375,10.6595123781012,13.3633676477285,11.1929900500503,24.4483178152634,21.526966076101,30.9804445812562,36.7387013452621,14.7943517289319,15.1495877700583,6.07971206614945,6.65286915094793,1.14846392823004,2.15380998079537,1.50829862880122,4.94060890586572,5.79669298447841,5.76499327703792,6.35030673459631,3.69038872550742,0,6.35473563452804,6.64938581433969,8.5751129630195,2.09265815368454,1.5626706890476,1.0470474879476,0,1.36609096991689,0.971020706062307,3.9028013572429,4.96746962975621,6.9747765821439,11.7358701652206,12.4274339136855,12.9614847813338,13.6100929351998,9.23910382727393,17.2503077237966,19.6305649087552,17.4086914082723,17.4768775554081,8.48956138918625,5.15760191889762,5.15672092277442,52.6022798234954,49.7251520515711,50.0726808769882,8.4711133017283,7.11435836888911,6.74924787961049,2.96659908770092,7.104801149461,5.09320187881288,8.83702102239575,16.3829587447395,17.8207838597832,15.984697062705,51.9884791614923,49.9162902550647,23.6407242484861,20.5109307979026,11.9498442259303,17.6185409599022,16.343979274904,16.5895055916743,49.1935853233623,56.3563884590843,45.8403766089949,17.8677119360884,23.0732670112989,24.2949213965128,54.2116597271549,51.2538050876771,57.4110293141926,9.39004797331482,11.260162455911,10.4351215932604,5.16254326188832,2.719885334831,2.69851595818909,1.29955283489534,3.13618820968135,6.60088774619234,6.13549161281008,7.53379413348319,6.36011234118612,23.5208511027056,1.28326477414318,5.09610479413291,7.11066703153331,13.4224445426953,13.9347926011304,13.1436355703844,9.93399753555822,12.4290184150642,8.16431764856536,11.6235168933311,13.3964810457342,6.91846491768175,13.1128697280782,11.170927177892,4.90099706185734,3.95511948374998,2.89198713839823,3.5384422077995,6.79420769779119,7.28777010919299,5.33362778448744,1.86391761218122,7.90508151931177,6.70229461803056,3.32094171771169,14.4976300652164,11.3981518888747,13.2153036155987,27.5614776504874,37.972550033946,52.3978648310645,33.0266208365325,42.7044813741652,19.9476522777178,27.0942909323155,18.8402823123085,7.46441823660558,11.1198013710817,9.25944165900485,15.4843327125617,18.6220704591113,17.2859644613135,17.3310540511072,23.0643732123001,22.5480147701336,21.1765897504987,27.1638539275966,12.0718076042392,12.6701073712439,15.1317966780996,13.8093311429372,13.6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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=80286 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q0P4,Q8BTV1 | |||
|association_with_transcript=0bp_to_ENSMUST00000035739,ENSMUST00000167992,NM_030254,uc009lmf.1,uc009lmg.1,uc009lmh.1_5end | |||
|cluster_id=chr8:40068881..40068920,+ | |||
|description=CAGE_peak_2_at_Tusc3_5end | |||
|id=chr8:40068881..40068920,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.25e-11!23;CL:0000337!1.25e-11!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.25e-11,23;CL:0000337,1.25e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!5.03e-22!49;UBERON:0001049!1.30e-21!52;UBERON:0005068!1.30e-21!52;UBERON:0006241!1.30e-21!52;UBERON:0007135!1.30e-21!52;UBERON:0000033!2.12e-21!63;UBERON:0002346!1.40e-20!71;UBERON:0003075!1.40e-20!71;UBERON:0007284!1.40e-20!71;UBERON:0000955!1.16e-19!50;UBERON:0006238!1.16e-19!50;UBERON:0003080!2.52e-19!40;UBERON:0002616!4.30e-19!49;UBERON:0002780!8.79e-19!39;UBERON:0001890!8.79e-19!39;UBERON:0006240!8.79e-19!39;UBERON:0001017!3.71e-18!73;UBERON:0005743!3.71e-18!73;UBERON:0000073!1.04e-17!75;UBERON:0001016!1.04e-17!75;UBERON:0002020!1.08e-17!34;UBERON:0007811!1.88e-17!86;UBERON:0000153!2.19e-17!94;UBERON:0002791!2.40e-14!29;UBERON:0003528!2.40e-14!29;UBERON:0001893!2.40e-14!29;UBERON:0004121!3.48e-13!102;UBERON:0000924!3.48e-13!102;UBERON:0006601!3.48e-13!102;UBERON:0000956!5.27e-10!21;UBERON:0001869!5.27e-10!21;UBERON:0000203!5.27e-10!21;UBERON:0002619!1.16e-08!17;UBERON:0002021!2.45e-07!10;UBERON:0000411!2.45e-07!10;UBERON:0001950!2.45e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.90e-23,64;UBERON:0003075,5.90e-23,64;UBERON:0007284,5.90e-23,64;UBERON:0000073,1.51e-22,54;UBERON:0003056,5.03e-22,49;UBERON:0001049,1.30e-21,52;UBERON:0005068,1.30e-21,52;UBERON:0006241,1.30e-21,52;UBERON:0007135,1.30e-21,52;UBERON:0003080,2.52e-19,40;UBERON:0002780,8.79e-19,39;UBERON:0001890,8.79e-19,39;UBERON:0006240,8.79e-19,39;UBERON:0000955,1.19e-18,47;UBERON:0006238,1.19e-18,47;UBERON:0001017,3.71e-18,73;UBERON:0002616,4.33e-18,46;UBERON:0001016,1.04e-17,75;UBERON:0002020,1.08e-17,34;UBERON:0010371,1.64e-17,73;UBERON:0010314,6.99e-17,92;UBERON:0003528,2.40e-14,29;UBERON:0002791,2.40e-14,29;UBERON:0001893,2.40e-14,29;UBERON:0004121,3.07e-14,95;UBERON:0000924,3.07e-14,95;UBERON:0006601,3.07e-14,95;UBERON:0000956,5.27e-10,21;UBERON:0001869,5.27e-10,21;UBERON:0000203,5.27e-10,21;UBERON:0002619,1.16e-08,17;UBERON:0002021,2.45e-07,10;UBERON:0000411,2.45e-07,10;UBERON:0001950,2.45e-07,10 | |||
|phase1_expression=17.4562243344225,1.04692622291808,2.27499619694768,1.51232105653415,0.500895729946347,5.70789524500425,6.30754129607919,17.5607719880544,6.89864738543167,8.89445200023575,22.4295538375412,14.9971658911232,14.2096605842901,17.6589212886375,10.6595123781012,13.3633676477285,11.1929900500503,24.4483178152634,21.526966076101,30.9804445812562,36.7387013452621,14.7943517289319,15.1495877700583,6.07971206614945,6.65286915094793,1.14846392823004,2.15380998079537,1.50829862880122,4.94060890586572,5.79669298447841,5.76499327703792,6.35030673459631,3.69038872550742,0,6.35473563452804,6.64938581433969,8.5751129630195,2.09265815368454,1.5626706890476,1.0470474879476,0,1.36609096991689,0.971020706062307,3.9028013572429,4.96746962975621,6.9747765821439,11.7358701652206,12.4274339136855,12.9614847813338,13.6100929351998,9.23910382727393,17.2503077237966,19.6305649087552,17.4086914082723,17.4768775554081,8.48956138918625,5.15760191889762,5.15672092277442,52.6022798234954,49.7251520515711,50.0726808769882,8.4711133017283,7.11435836888911,6.74924787961049,2.96659908770092,7.104801149461,5.09320187881288,8.83702102239575,16.3829587447395,17.8207838597832,15.984697062705,51.9884791614923,49.9162902550647,23.6407242484861,20.5109307979026,11.9498442259303,17.6185409599022,16.343979274904,16.5895055916743,49.1935853233623,56.3563884590843,45.8403766089949,17.8677119360884,23.0732670112989,24.2949213965128,54.2116597271549,51.2538050876771,57.4110293141926,9.39004797331482,11.260162455911,10.4351215932604,5.16254326188832,2.719885334831,2.69851595818909,1.29955283489534,3.13618820968135,6.60088774619234,6.13549161281008,7.53379413348319,6.36011234118612,23.5208511027056,1.28326477414318,5.09610479413291,7.11066703153331,13.4224445426953,13.9347926011304,13.1436355703844,9.93399753555822,12.4290184150642,8.16431764856536,11.6235168933311,13.3964810457342,6.91846491768175,13.1128697280782,11.170927177892,4.90099706185734,3.95511948374998,2.89198713839823,3.5384422077995,6.79420769779119,7.28777010919299,5.33362778448744,1.86391761218122,7.90508151931177,6.70229461803056,3.32094171771169,14.4976300652164,11.3981518888747,13.2153036155987,27.5614776504874,37.972550033946,52.3978648310645,33.0266208365325,42.7044813741652,19.9476522777178,27.0942909323155,18.8402823123085,7.46441823660558,11.1198013710817,9.25944165900485,15.4843327125617,18.6220704591113,17.2859644613135,17.3310540511072,23.0643732123001,22.5480147701336,21.1765897504987,27.1638539275966,12.0718076042392,12.6701073712439,15.1317966780996,13.8093311429372,13.6243152120543,8.358051996532,7.40815691068596,9.75267907410617,13.3420505589515,14.411482798424,10.5140494776369,14.2916783049496,14.7751417788091,15.1252131627252,15.1516630774535,16.5281954667819,13.7297730469767,13.0219009060228,11.5357562601836,13.1944836874902,12.1774288935976,7.38753588355929,5.10733500138891,4.67839959761063,4.39100230582101,3.62357330653004,27.5479832619007,30.4597652642682,1.32167513193519,2.64450566663544,11.3042772783674,12.3085436086032,9.79392706047909,6.05050573870028,6.89371935919098,9.3210556795154,4.2707615539006,6.91735609840846,6.28338022000674,8.15721535368718,9.55324026883689,1.79763881730844,3.45820879799511,2.38969527905241,14.6044283733873,12.4530878744604,10.1436962105772,13.2373363099454,8.92181440971078,15.0792012764185,13.9120381673366,8.11855813887812,8.00693511991011,9.37818445805684,1.48226313543574,10.1775514486817,7.66580080941492,4.94696647246678,9.94014594803664,8.92355491083942,9.16653066413111,8.34318798607351,5.99900339067631,6.31491250332587,4.31304619582064,8.18710084870708,5.30464044294753,2.02063102357689,1.61457672169721,0.482443521363367,9.79191907883005,11.5589761179996,13.5260930446881,9.33597971763535,9.38760993154008,11.7254380209271,13.5684875305028,11.1226179278945,12.7684466726015,13.730810758224,9.40783135079174,10.3233888270915,9.32498902075836,10.1254341007058,4.52373851817817,11.4220193601929,0.983528546038072,3.03530420935206,17.5000143086693,17.8161763620149,7.86887737808042,0.757412781613119,8.20321370482267,10.1514073517126,8.61693590931196,4.30143836314594,7.5751549188014,5.94460714656548,5.26253912177363,7.3063964477828,7.11518000303742,32.4534529586025,10.0777460497871,17.0942979520565,20.0350960004899,11.71287873105,7.96470830039777,14.0812768969889,14.2092071773433,10.9390946258421,13.2885851796348,12.912276213645,14.2135561242522,14.1778154496227,14.2598951353889,6.32073515871632,4.21674434299995,8.25084345985495,26.2138496430417,15.3051929926614,16.4285528404098,20.1476812929697,26.0690143454142,31.0361742627603,32.58070607922,25.8795206747409,7.50949465803873,7.41412248023371,12.3495902910779,2.80306630000516,5.9741837877485,5.79004079310296,5.49112782414428,4.10352249362653,3.49777003955821,13.7214723487777,7.51831875510552,10.1129565301979,7.9633646768976,6.96963290917357,8.88512480186664,11.2101304871196,16.1479508494163,20.5728634915777,16.9985967779441,3.81868247206045,12.4952717464548,10.9792512248498,10.692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| |||
|short_description=p2@Tusc3 | |||
}} |
Latest revision as of 23:25, 1 October 2015
Short description: | p2@Tusc3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tusc3_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000035739, ENSMUST00000167992, NM_030254, uc009lmf.1, uc009lmg.1, uc009lmh.1_5end |
EntrezGene: | Tusc3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.25e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.25e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 5.90e-23 | 64 |
neural plate | 5.90e-23 | 64 |
presumptive neural plate | 5.90e-23 | 64 |
regional part of nervous system | 1.51e-22 | 54 |
pre-chordal neural plate | 5.03e-22 | 49 |
neural tube | 1.30e-21 | 52 |
neural rod | 1.30e-21 | 52 |
future spinal cord | 1.30e-21 | 52 |
neural keel | 1.30e-21 | 52 |
anterior neural tube | 2.52e-19 | 40 |
regional part of forebrain | 8.79e-19 | 39 |
forebrain | 8.79e-19 | 39 |
future forebrain | 8.79e-19 | 39 |
brain | 1.19e-18 | 47 |
future brain | 1.19e-18 | 47 |
central nervous system | 3.71e-18 | 73 |
regional part of brain | 4.33e-18 | 46 |
nervous system | 1.04e-17 | 75 |
gray matter | 1.08e-17 | 34 |
ecto-epithelium | 1.64e-17 | 73 |
structure with developmental contribution from neural crest | 6.99e-17 | 92 |
brain grey matter | 2.40e-14 | 29 |
regional part of telencephalon | 2.40e-14 | 29 |
telencephalon | 2.40e-14 | 29 |
ectoderm-derived structure | 3.07e-14 | 95 |
ectoderm | 3.07e-14 | 95 |
presumptive ectoderm | 3.07e-14 | 95 |
cerebral cortex | 5.27e-10 | 21 |
cerebral hemisphere | 5.27e-10 | 21 |
pallium | 5.27e-10 | 21 |
regional part of cerebral cortex | 1.16e-08 | 17 |
occipital lobe | 2.45e-07 | 10 |
visual cortex | 2.45e-07 | 10 |
neocortex | 2.45e-07 | 10 |