FF:10206-103F8: Difference between revisions

Latest revision as of 13:56, 3 June 2020

Name:	heart - pulmonic valve, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12856
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	M
age	26
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234135-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005392

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12856		CAGE		DRX008661		DRR009533

Accession ID Hg19

Library id		BAM		CTSS
CNhs12856		DRZ000958		DRZ002343

Accession ID Hg38

Library id		BAM		CTSS
CNhs12856		DRZ012308		DRZ013693

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	1.208
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.382
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0896
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.416
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0233
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.164
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.201
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	1.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0896
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0.227
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0896
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.164
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.797
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.103
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0896
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.171
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.647
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.906
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.164
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0773
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.164
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0133
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0896
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0896
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.627
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.332
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.6
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.486
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0.164
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0896
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.164
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.69
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.0896
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.452
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0.452
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0896
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0896
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.0896
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0896
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.227
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12856

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00576
MA0003.1	MA0003.1	0.869
MA0004.1	MA0004.1	9.56141e-4
MA0006.1	MA0006.1	0.804
MA0007.1	MA0007.1	0.209
MA0009.1	MA0009.1	0.333
MA0014.1	MA0014.1	0.155
MA0017.1	MA0017.1	0.608
MA0018.2	MA0018.2	0.0715
MA0019.1	MA0019.1	0.748
MA0024.1	MA0024.1	0.00361
MA0025.1	MA0025.1	0.874
MA0027.1	MA0027.1	0.734
MA0028.1	MA0028.1	1.53077e-7
MA0029.1	MA0029.1	0.826
MA0030.1	MA0030.1	0.747
MA0031.1	MA0031.1	0.977
MA0035.2	MA0035.2	0.413
MA0038.1	MA0038.1	0.00768
MA0039.2	MA0039.2	0.0378
MA0040.1	MA0040.1	0.199
MA0041.1	MA0041.1	0.964
MA0042.1	MA0042.1	0.673
MA0043.1	MA0043.1	0.0134
MA0046.1	MA0046.1	0.0141
MA0047.2	MA0047.2	0.597
MA0048.1	MA0048.1	0.183
MA0050.1	MA0050.1	0.121
MA0051.1	MA0051.1	0.053
MA0052.1	MA0052.1	3.92143e-32
MA0055.1	MA0055.1	0.00114
MA0057.1	MA0057.1	0.808
MA0058.1	MA0058.1	1.19296e-4
MA0059.1	MA0059.1	1.73276e-5
MA0060.1	MA0060.1	4.17226e-8
MA0061.1	MA0061.1	1.47252e-6
MA0062.2	MA0062.2	1.56365e-14
MA0065.2	MA0065.2	0.362
MA0066.1	MA0066.1	0.184
MA0067.1	MA0067.1	0.133
MA0068.1	MA0068.1	0.879
MA0069.1	MA0069.1	0.883
MA0070.1	MA0070.1	0.825
MA0071.1	MA0071.1	0.643
MA0072.1	MA0072.1	0.395
MA0073.1	MA0073.1	0.664
MA0074.1	MA0074.1	0.795
MA0076.1	MA0076.1	1.09282e-9
MA0077.1	MA0077.1	0.917
MA0078.1	MA0078.1	0.521
MA0079.2	MA0079.2	0.67
MA0080.2	MA0080.2	2.28277e-7
MA0081.1	MA0081.1	0.0106
MA0083.1	MA0083.1	3.37424e-6
MA0084.1	MA0084.1	0.884
MA0087.1	MA0087.1	0.888
MA0088.1	MA0088.1	0.0287
MA0090.1	MA0090.1	0.0117
MA0091.1	MA0091.1	0.431
MA0092.1	MA0092.1	0.331
MA0093.1	MA0093.1	4.0146e-4
MA0099.2	MA0099.2	3.29489e-28
MA0100.1	MA0100.1	0.0193
MA0101.1	MA0101.1	6.30421e-5
MA0102.2	MA0102.2	0.0314
MA0103.1	MA0103.1	0.00834
MA0104.2	MA0104.2	1.84993e-5
MA0105.1	MA0105.1	3.20637e-8
MA0106.1	MA0106.1	0.0462
MA0107.1	MA0107.1	2.1527e-6
MA0108.2	MA0108.2	4.16679e-4
MA0111.1	MA0111.1	0.578
MA0112.2	MA0112.2	0.612
MA0113.1	MA0113.1	0.102
MA0114.1	MA0114.1	0.436
MA0115.1	MA0115.1	0.393
MA0116.1	MA0116.1	7.0597e-4
MA0117.1	MA0117.1	0.403
MA0119.1	MA0119.1	0.302
MA0122.1	MA0122.1	0.237
MA0124.1	MA0124.1	0.53
MA0125.1	MA0125.1	0.717
MA0131.1	MA0131.1	0.25
MA0135.1	MA0135.1	0.861
MA0136.1	MA0136.1	1.0032e-13
MA0137.2	MA0137.2	0.631
MA0138.2	MA0138.2	0.451
MA0139.1	MA0139.1	0.0775
MA0140.1	MA0140.1	0.821
MA0141.1	MA0141.1	0.0539
MA0142.1	MA0142.1	0.00451
MA0143.1	MA0143.1	0.326
MA0144.1	MA0144.1	0.455
MA0145.1	MA0145.1	0.458
MA0146.1	MA0146.1	0.138
MA0147.1	MA0147.1	5.97649e-6
MA0148.1	MA0148.1	0.851
MA0149.1	MA0149.1	0.19
MA0150.1	MA0150.1	1.11163e-7
MA0152.1	MA0152.1	0.399
MA0153.1	MA0153.1	0.454
MA0154.1	MA0154.1	0.0886
MA0155.1	MA0155.1	0.866
MA0156.1	MA0156.1	9.61262e-15
MA0157.1	MA0157.1	0.359
MA0159.1	MA0159.1	0.54
MA0160.1	MA0160.1	0.138
MA0162.1	MA0162.1	0.556
MA0163.1	MA0163.1	1.11942e-5
MA0164.1	MA0164.1	0.488
MA0258.1	MA0258.1	0.633
MA0259.1	MA0259.1	0.0237

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12856

Novel motif	Logo	P-value
1	1	0.17
10	10	0.126
100	100	0.514
101	101	0.246
102	102	0.269
103	103	0.115
104	104	0.098
105	105	0.775
106	106	0.596
107	107	0.487
108	108	0.42
109	109	0.00622
11	11	0.072
110	110	0.143
111	111	0.293
112	112	0.826
113	113	0.245
114	114	0.58
115	115	0.724
116	116	0.564
117	117	0.00823
118	118	0.0121
119	119	0.385
12	12	0.627
120	120	0.13
121	121	0.424
122	122	0.0343
123	123	0.927
124	124	0.626
125	125	0.566
126	126	0.403
127	127	0.539
128	128	0.459
129	129	0.64
13	13	0.119
130	130	0.421
131	131	0.216
132	132	0.0188
133	133	0.298
134	134	0.346
135	135	0.247
136	136	2.99251e-4
137	137	0.441
138	138	0.693
139	139	0.629
14	14	0.762
140	140	0.602
141	141	0.919
142	142	0.851
143	143	0.0171
144	144	0.511
145	145	0.359
146	146	0.266
147	147	0.0271
148	148	0.848
149	149	0.377
15	15	0.17
150	150	0.362
151	151	0.999
152	152	0.503
153	153	0.126
154	154	0.766
155	155	0.413
156	156	0.831
157	157	0.42
158	158	0.395
159	159	0.142
16	16	0.116
160	160	0.865
161	161	0.688
162	162	0.898
163	163	0.377
164	164	0.0597
165	165	0.465
166	166	0.0563
167	167	0.213
168	168	0.823
169	169	0.232
17	17	0.402
18	18	0.0668
19	19	0.289
2	2	0.203
20	20	0.0664
21	21	0.606
22	22	0.901
23	23	0.428
24	24	0.0462
25	25	0.258
26	26	0.0157
27	27	0.39
28	28	0.638
29	29	1.2163e-4
3	3	0.146
30	30	0.247
31	31	0.894
32	32	0.364
33	33	0.0469
34	34	0.275
35	35	0.671
36	36	0.0581
37	37	0.207
38	38	0.542
39	39	0.313
4	4	0.685
40	40	0.0127
41	41	0.15
42	42	0.213
43	43	0.13
44	44	0.499
45	45	0.48
46	46	0.319
47	47	0.0888
48	48	0.0817
49	49	0.736
5	5	0.552
50	50	0.977
51	51	0.424
52	52	0.274
53	53	0.832
54	54	0.727
55	55	0.729
56	56	0.556
57	57	0.298
58	58	0.477
59	59	0.503
6	6	0.962
60	60	0.984
61	61	0.0742
62	62	0.467
63	63	0.614
64	64	0.146
65	65	0.982
66	66	4.26348e-4
67	67	0.564
68	68	0.187
69	69	0.62
7	7	0.36
70	70	0.131
71	71	0.0187
72	72	0.456
73	73	0.0611
74	74	0.473
75	75	0.0182
76	76	0.112
77	77	0.62
78	78	0.509
79	79	0.381
8	8	0.251
80	80	0.526
81	81	0.891
82	82	0.416
83	83	0.206
84	84	0.439
85	85	0.2
86	86	0.696
87	87	2.34822e-6
88	88	0.984
89	89	0.486
9	9	0.857
90	90	0.0919
91	91	0.0684
92	92	0.653
93	93	0.713
94	94	0.109
95	95	2.53242e-4
96	96	0.389
97	97	0.809
98	98	0.748
99	99	0.256

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12856

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010206 human heart, pulmonic valve - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002146 (pulmonary valve)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0003978 (valve)
0000946 (cardial valve)
0005623 (semi-lunar valve)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010206 (human heart, pulmonic valve - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0005062 (neural fold)
UBERON:0007284 (presumptive neural plate)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008552
+|DRA_sample_Accession=CAGE@SAMD00005392
-|accession_numbers=CAGE;DRX008661;DRR009533;DRZ000958;DRZ002343
+|accession_numbers=CAGE;DRX008661;DRR009533;DRZ000958;DRZ002343;DRZ012308;DRZ013693
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0007100,UBERON:0000948,UBERON:0002146,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0003978,UBERON:0000946,UBERON:0005623,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:52437488..52437507,+!p2@NR4A1!2.39!243.37!NR4A1;;chr7:35293685..35293718,-!p1@TBX20!2.36!230.08!TBX20;;chr15:42749722..42749739,-!p2@ZFP106!2.32!362.53!ZFP106;;chr4:174451370..174451387,-!p1@HAND2!2.10!126.27!HAND2;;chr5:172662197..172662216,-!p1@NKX2-5!1.95!87.31!NKX2-5;;chr20:62680984..62680999,-!p1@SOX18!1.94!112.52!SOX18;;chr1:40105299..40105326,-!p1@HEYL!1.92!82.50!HEYL;;chr19:46801639..46801699,+!p1@HIF3A!1.92!81.58!HIF3A;;chr2:19558373..19558392,-!p1@OSR1!1.71!133.14!OSR1;;chr6:134210243..134210257,+!p1@TCF21!1.70!49.04!TCF21;;chr8:11561684..11561751,+!p1@GATA4!1.69!47.44!GATA4;;chr6:126070769..126070801,+!p1@HEY2!1.62!46.29!HEY2;;chr11:113930425..113930471,+!p1@ZBTB16!1.60!54.54!ZBTB16;;chr14:105935396..105935413,+!p4@MTA1!1.57!36.21!MTA1;;chr4:174450089..174450153,-!p2@HAND2!1.55!34.37!HAND2;;chr3:169381420..169381535,-!p1@MECOM!1.54!39.19!MECOM;;chr4:174451350..174451363,-!p3@HAND2!1.52!32.31!HAND2;;chr8:10588010..10588030,-!p1@SOX7!1.52!31.85!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.49!30.02!ERG;;chr17:53342311..53342400,+!p1@HLF!1.48!33.46!HLF;;chr18:19749541..19749557,+!p1@GATA6!1.41!76.31!GATA6;;chr5:71803177..71803255,-!p1@ZNF366!1.40!24.29!ZNF366;;chr5:172662303..172662320,-!p2@NKX2-5!1.39!23.37!NKX2-5;;chr7:73038839..73038862,-!p1@MLXIPL!1.38!23.15!MLXIPL;;chrY:21906594..21906622,-!p1@KDM5D!1.36!22.00!KDM5D;;chr5:158526917..158526932,-!p1@EBF1!1.33!50.42!EBF1;;chr18:19749386..19749404,+!p2@GATA6!1.33!28.65!GATA6;;chr1:214161272..214161322,+!p1@PROX1!1.33!28.19!PROX1;;chr17:6926362..6926377,+!p1@BCL6B!1.32!19.94!BCL6B;;chr3:12330560..12330579,+!p1@PPARG!1.31!22.23!PPARG;;chr16:54320617..54320643,-!p3@IRX3!1.30!24.29!IRX3;;chr2:145277882..145277967,-!p3@ZEB2!1.29!31.62!ZEB2;;chr3:21792682..21792720,-!p1@ZNF385D!1.28!17.87!ZNF385D;;chr1:61548374..61548415,+!p4@NFIA!1.24!30.48!NFIA;;chr17:41739283..41739297,-!p1@MEOX1!1.24!16.50!MEOX1;;chr7:15726296..15726315,-!p1@MEOX2!1.24!16.27!MEOX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.23!41.94!ZFPM2;;chr8:25902876..25902936,-!p1@EBF2!1.23!16.04!EBF2;;chr7:15726243..15726293,-!p2@MEOX2!1.23!15.81!MEOX2;;chr19:33793430..33793447,-!p1@CEBPA!1.22!64.62!CEBPA;;chr14:73360799..73360817,-!p1@DPF3!1.22!54.08!DPF3;;chr5:88178983..88179012,-!p1@MEF2C!1.20!112.98!MEF2C;;chr16:67198633..67198671,+!p1@HSF4!1.18!14.21!HSF4;;chr5:158526459..158526481,-!p2@EBF1!1.17!18.33!EBF1;;chr11:113930401..113930422,+!p3@ZBTB16!1.17!13.75!ZBTB16;;chr7:150945754..150945789,-!p2@SMARCD3!1.16!41.71!SMARCD3;;chr1:170633348..170633399,+!p2@PRRX1!1.16!18.56!PRRX1;;chr8:55370487..55370503,+!p1@SOX17!1.16!13.29!SOX17;;chr22:41763452..41763466,+!p2@TEF!1.16!13.29!TEF;;chr20:590944..590960,-!p1@TCF15!1.15!13.06!TCF15;;chr7:44143925..44143970,+!p1@AEBP1!1.14!284.39!AEBP1;;chr1:61548225..61548299,+!p1@NFIA!1.14!165.00!NFIA;;chr19:45908292..45908374,-!p1@PPP1R13L!1.14!113.66!PPP1R13L;;chr3:114819124..114819200,-!p3@ZBTB20!1.14!29.79!ZBTB20;;chr20:51588873..51588953,+!p1@TSHZ2!1.12!16.04!TSHZ2;;chr1:2985760..2985774,+!p1@PRDM16!1.12!12.15!PRDM16;;chr10:131762504..131762555,-!p1@EBF3!1.12!12.15!EBF3;;chr1:170633262..170633285,+!p3@PRRX1!1.11!13.52!PRRX1;;chr22:38380543..38380569,-!p1@SOX10!1.11!11.92!SOX10;;chr9:102584159..102584174,+!p2@NR4A3!1.10!21.08!NR4A3;;chr19:22193731..22193751,-!p1@ZNF208!1.10!11.69!ZNF208;;chr16:85932760..85932775,+!p1@IRF8!1.10!11.46!IRF8;;chrY:21906761..21906810,-!p2@KDM5D!1.10!11.46!KDM5D;;chr12:26277956..26277980,-!p1@BHLHE41!1.09!41.02!BHLHE41;;chr11:46337652..46337682,+!p16@CREB3L1!1.08!11.00!CREB3L1;;chr1:61548069..61548102,+!p3@NFIA!1.07!26.58!NFIA;;chr7:44143978..44143989,+!p2@AEBP1!1.07!19.71!AEBP1;;chr3:126076242..126076257,-!p1@KLF15!1.07!13.52!KLF15;;chr3:69788576..69788648,+!p1@MITF!1.06!56.37!MITF;;chr1:61547894..61547968,+!p2@NFIA!1.06!30.71!NFIA;;chr11:125034640..125034655,+!p1@PKNOX2!1.06!10.54!PKNOX2;;chr12:52445218..52445237,+!p1@NR4A1!1.05!131.31!NR4A1;;chr3:21792585..21792625,-!p2@ZNF385D!1.05!11.46!ZNF385D;;chr3:169381183..169381205,-!p4@MECOM!1.04!9.85!MECOM;;chr3:114343768..114343822,-!p1@ZBTB20!1.03!42.85!ZBTB20;;chr3:69915385..69915438,+!p3@MITF!1.03!9.62!MITF;;chr1:8483756..8483809,-!p5@RERE!1.02!26.58!RERE;;chr11:16629261..16629284,-!p1@SOX6!1.02!9.40!SOX6;;chr16:67198683..67198698,+!p2@HSF4!1.02!9.40!HSF4;;chr11:16627614..16627651,-!p4@SOX6!1.01!9.17!SOX6;;chr9:14314566..14314618,-!p1@NFIB!1.00!110.68!NFIB;;chr9:14314131..14314147,-!p2@NFIB!1.00!51.10!NFIB;;chr5:88179017..88179046,-!p2@MEF2C!1.00!37.12!MEF2C;;chr13:72441315..72441454,-!p1@DACH1!1.00!18.10!DACH1;;chr18:19749517..19749531,+!p3@GATA6!1.00!16.27!GATA6;;chr6:1610293..1610310,+!p1@FOXC1!1.00!15.12!FOXC1;;chr11:47400078..47400106,-!p1@SPI1!1.00!8.94!SPI1;;chr2:238536207..238536290,+!p2@LRRFIP1!0.99!88.23!LRRFIP1;;chr12:96588368..96588394,+!p3@ELK3!0.99!23.83!ELK3;;chr9:14314522..14314556,-!p3@NFIB!0.99!21.08!NFIB;;chr9:102584262..102584276,+!p1@NR4A3!0.99!19.94!NR4A3;;chr11:113930291..113930339,+!p2@ZBTB16!0.99!14.67!ZBTB16;;chr1:170632285..17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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000946;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002342;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006603,UBERON:0003104,UBERON:0005062,UBERON:0007284,UBERON:0010316
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%2520-%2520pulmonic%2520valve%252c%2520adult.CNhs12856.10206-103F8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%2520-%2520pulmonic%2520valve%252c%2520adult.CNhs12856.10206-103F8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%2520-%2520pulmonic%2520valve%252c%2520adult.CNhs12856.10206-103F8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/heart%2520-%2520pulmonic%2520valve%252c%2520adult.CNhs12856.10206-103F8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/heart%2520-%2520pulmonic%2520valve%252c%2520adult.CNhs12856.10206-103F8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10206-103F8
 |is_a=EFO:0002091;;FF:0010206
 |is_obsolete=
 |library_id=CNhs12856
-|library_ids=CNhs12856
+|library_id_phase_based=2:CNhs12856
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10206
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10206
 |name=heart - pulmonic valve, adult
 |namespace=FANTOM5
@@ Line 50: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12856,LSID973,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10206-103F8;search_select_hide=table117:FF:10206-103F8
 }}

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Latest revision as of 13:56, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0