FFCP PHASE1:Mm9::chr15:89422286..89422347,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:89422286..89422347,-
|short_description=p1@Rabl2
|description=CAGE_peak_1_at_Rabl2_5end
|association_with_transcript=0bp_to_ENSMUST00000058058,ENSMUST0000...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=68708 | |EntrezGene=68708 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=463 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q9T7,E9PXG6,E9Q473,E9Q0F8 | |UniProt=E9Q9T7,E9PXG6,E9Q473,E9Q0F8 | ||
|association_with_transcript=0bp_to_ENSMUST00000058058,ENSMUST00000094056,ENSMUST00000163376,ENSMUST00000165747,ENSMUST00000169466,ENSMUST00000170126,ENSMUST00000171142_5end | |||
|cluster_id=chr15:89422286..89422347,- | |||
|description=CAGE_peak_1_at_Rabl2_5end | |||
|id=chr15:89422286..89422347,- | |||
|ontology_enrichment_celltype=CL:0000117!3.55e-08!23;CL:0000337!3.55e-08!23;CL:0000540!1.30e-07!33;CL:0000047!1.30e-07!33;CL:0000031!1.30e-07!33;CL:0000404!1.30e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.55e-08,23;CL:0000337,3.55e-08,23;CL:0000540,1.30e-07,33;CL:0000047,1.30e-07,33;CL:0000031,1.30e-07,33;CL:0000404,1.30e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!6.86e-20!63;UBERON:0001017!1.13e-19!73;UBERON:0005743!1.13e-19!73;UBERON:0002346!2.63e-19!71;UBERON:0003075!2.63e-19!71;UBERON:0007284!2.63e-19!71;UBERON:0000073!5.15e-19!75;UBERON:0001016!5.15e-19!75;UBERON:0001049!7.31e-19!52;UBERON:0005068!7.31e-19!52;UBERON:0006241!7.31e-19!52;UBERON:0007135!7.31e-19!52;UBERON:0000955!4.61e-18!50;UBERON:0006238!4.61e-18!50;UBERON:0003056!5.79e-18!49;UBERON:0002616!1.68e-17!49;UBERON:0004121!5.17e-17!102;UBERON:0000924!5.17e-17!102;UBERON:0006601!5.17e-17!102;UBERON:0003080!2.67e-15!40;UBERON:0002780!1.28e-14!39;UBERON:0001890!1.28e-14!39;UBERON:0006240!1.28e-14!39;UBERON:0002020!2.05e-12!34;UBERON:0000153!7.02e-12!94;UBERON:0002791!2.27e-10!29;UBERON:0003528!2.27e-10!29;UBERON:0001893!2.27e-10!29;UBERON:0007811!4.81e-10!86;UBERON:0000956!2.51e-07!21;UBERON:0001869!2.51e-07!21;UBERON:0000203!2.51e-07!21;UBERON:0002021!2.80e-07!10;UBERON:0000411!2.80e-07!10;UBERON:0001950!2.80e-07!10;UBERON:0000468!3.33e-07!333;UBERON:0002619!9.21e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.00e-21,64;UBERON:0003075,1.00e-21,64;UBERON:0007284,1.00e-21,64;UBERON:0000073,9.35e-20,54;UBERON:0001017,1.13e-19,73;UBERON:0010371,3.18e-19,73;UBERON:0001016,5.14e-19,75;UBERON:0001049,7.29e-19,52;UBERON:0005068,7.29e-19,52;UBERON:0006241,7.29e-19,52;UBERON:0007135,7.29e-19,52;UBERON:0004121,1.77e-18,95;UBERON:0000924,1.77e-18,95;UBERON:0006601,1.77e-18,95;UBERON:0003056,5.78e-18,49;UBERON:0000955,1.35e-16,47;UBERON:0006238,1.35e-16,47;UBERON:0002616,4.79e-16,46;UBERON:0003080,2.66e-15,40;UBERON:0002780,1.28e-14,39;UBERON:0001890,1.28e-14,39;UBERON:0006240,1.28e-14,39;UBERON:0010314,9.15e-13,92;UBERON:0002020,2.05e-12,34;UBERON:0003528,2.27e-10,29;UBERON:0002791,2.27e-10,29;UBERON:0001893,2.27e-10,29;UBERON:0000956,2.51e-07,21;UBERON:0001869,2.51e-07,21;UBERON:0000203,2.51e-07,21;UBERON:0002021,2.79e-07,10;UBERON:0000411,2.79e-07,10;UBERON:0001950,2.79e-07,10;UBERON:0002619,9.21e-07,17 | |||
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| ||
|short_description=p1@Rabl2 | |||
}} | }} |
Latest revision as of 07:48, 27 September 2015
Short description: | p1@Rabl2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rabl2_5end |
Coexpression cluster: | MCL_coexpression_mm9:463 |
Association with transcript: | 0bp_to_ENSMUST00000058058, ENSMUST00000094056, ENSMUST00000163376, ENSMUST00000165747, ENSMUST00000169466, ENSMUST00000170126, ENSMUST00000171142_5end |
EntrezGene: | Rabl2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.55e-08 | 23 |
neuroblast (sensu Vertebrata) | 3.55e-08 | 23 |
neuron | 1.30e-07 | 33 |
neuronal stem cell | 1.30e-07 | 33 |
neuroblast | 1.30e-07 | 33 |
electrically signaling cell | 1.30e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.00e-21 | 64 |
neural plate | 1.00e-21 | 64 |
presumptive neural plate | 1.00e-21 | 64 |
regional part of nervous system | 9.35e-20 | 54 |
central nervous system | 1.13e-19 | 73 |
ecto-epithelium | 3.18e-19 | 73 |
nervous system | 5.14e-19 | 75 |
neural tube | 7.29e-19 | 52 |
neural rod | 7.29e-19 | 52 |
future spinal cord | 7.29e-19 | 52 |
neural keel | 7.29e-19 | 52 |
ectoderm-derived structure | 1.77e-18 | 95 |
ectoderm | 1.77e-18 | 95 |
presumptive ectoderm | 1.77e-18 | 95 |
pre-chordal neural plate | 5.78e-18 | 49 |
brain | 1.35e-16 | 47 |
future brain | 1.35e-16 | 47 |
regional part of brain | 4.79e-16 | 46 |
anterior neural tube | 2.66e-15 | 40 |
regional part of forebrain | 1.28e-14 | 39 |
forebrain | 1.28e-14 | 39 |
future forebrain | 1.28e-14 | 39 |
structure with developmental contribution from neural crest | 9.15e-13 | 92 |
gray matter | 2.05e-12 | 34 |
brain grey matter | 2.27e-10 | 29 |
regional part of telencephalon | 2.27e-10 | 29 |
telencephalon | 2.27e-10 | 29 |
cerebral cortex | 2.51e-07 | 21 |
cerebral hemisphere | 2.51e-07 | 21 |
pallium | 2.51e-07 | 21 |
occipital lobe | 2.79e-07 | 10 |
visual cortex | 2.79e-07 | 10 |
neocortex | 2.79e-07 | 10 |
regional part of cerebral cortex | 9.21e-07 | 17 |