FFCP PHASE1:Mm9::chr2:71205623..71205634,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:71205623..71205634,-
|short_description=p2@Slc25a12
|description=CAGE_peak_2_at_Slc25a12_5end
|association_with_transcript=-12bp_to_NM_172436,uc008kan.1_5e...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=78830 | |EntrezGene=78830 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3247 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BH59 | |UniProt=Q8BH59 | ||
|association_with_transcript=-12bp_to_NM_172436,uc008kan.1_5end | |||
|cluster_id=chr2:71205623..71205634,- | |||
|description=CAGE_peak_2_at_Slc25a12_5end | |||
|id=chr2:71205623..71205634,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.37e-12!75;UBERON:0001016!4.37e-12!75;UBERON:0000955!7.84e-12!50;UBERON:0006238!7.84e-12!50;UBERON:0001017!8.67e-12!73;UBERON:0005743!8.67e-12!73;UBERON:0001049!1.04e-11!52;UBERON:0005068!1.04e-11!52;UBERON:0006241!1.04e-11!52;UBERON:0007135!1.04e-11!52;UBERON:0002616!2.63e-11!49;UBERON:0002020!1.13e-10!34;UBERON:0007811!1.64e-10!86;UBERON:0004121!1.83e-10!102;UBERON:0000924!1.83e-10!102;UBERON:0006601!1.83e-10!102;UBERON:0000033!3.97e-10!63;UBERON:0002346!4.44e-10!71;UBERON:0003075!4.44e-10!71;UBERON:0007284!4.44e-10!71;UBERON:0002791!3.18e-09!29;UBERON:0003528!3.18e-09!29;UBERON:0001893!3.18e-09!29;UBERON:0000153!2.15e-08!94;UBERON:0000477!3.53e-08!154;UBERON:0003080!5.27e-08!40;UBERON:0002780!1.77e-07!39;UBERON:0001890!1.77e-07!39;UBERON:0006240!1.77e-07!39;UBERON:0002619!2.13e-07!17;UBERON:0004111!6.12e-07!122;UBERON:0000956!6.76e-07!21;UBERON:0001869!6.76e-07!21;UBERON:0000203!6.76e-07!21;UBERON:0002021!9.29e-07!10;UBERON:0000411!9.29e-07!10;UBERON:0001950!9.29e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.12e-13,92;UBERON:0000073,7.77e-13,54;UBERON:0001016,4.74e-12,75;UBERON:0001017,9.40e-12,73;UBERON:0001049,1.03e-11,52;UBERON:0005068,1.03e-11,52;UBERON:0006241,1.03e-11,52;UBERON:0007135,1.03e-11,52;UBERON:0002020,1.12e-10,34;UBERON:0000955,3.69e-10,47;UBERON:0006238,3.69e-10,47;UBERON:0004121,5.23e-10,95;UBERON:0000924,5.23e-10,95;UBERON:0006601,5.23e-10,95;UBERON:0002346,8.15e-10,64;UBERON:0003075,8.15e-10,64;UBERON:0007284,8.15e-10,64;UBERON:0002616,1.17e-09,46;UBERON:0003528,3.16e-09,29;UBERON:0002791,3.16e-09,29;UBERON:0001893,3.16e-09,29;UBERON:0010371,2.41e-08,73;UBERON:0003080,5.23e-08,40;UBERON:0002780,1.76e-07,39;UBERON:0001890,1.76e-07,39;UBERON:0006240,1.76e-07,39;UBERON:0002619,2.12e-07,17;UBERON:0004111,5.81e-07,122;UBERON:0000956,6.73e-07,21;UBERON:0001869,6.73e-07,21;UBERON:0000203,6.73e-07,21;UBERON:0002021,9.24e-07,10;UBERON:0000411,9.24e-07,10;UBERON:0001950,9.24e-07,10 | |||
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| ||
|short_description=p2@Slc25a12 | |||
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Latest revision as of 22:19, 26 September 2015
Short description: | p2@Slc25a12 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Slc25a12_5end |
Coexpression cluster: | MCL_coexpression_mm9:3247 |
Association with transcript: | -12bp_to_NM_172436, uc008kan.1_5end |
EntrezGene: | Slc25a12 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.12e-13 | 92 |
regional part of nervous system | 7.77e-13 | 54 |
nervous system | 4.74e-12 | 75 |
central nervous system | 9.40e-12 | 73 |
neural tube | 1.03e-11 | 52 |
neural rod | 1.03e-11 | 52 |
future spinal cord | 1.03e-11 | 52 |
neural keel | 1.03e-11 | 52 |
gray matter | 1.12e-10 | 34 |
brain | 3.69e-10 | 47 |
future brain | 3.69e-10 | 47 |
ectoderm-derived structure | 5.23e-10 | 95 |
ectoderm | 5.23e-10 | 95 |
presumptive ectoderm | 5.23e-10 | 95 |
neurectoderm | 8.15e-10 | 64 |
neural plate | 8.15e-10 | 64 |
presumptive neural plate | 8.15e-10 | 64 |
regional part of brain | 1.17e-09 | 46 |
brain grey matter | 3.16e-09 | 29 |
regional part of telencephalon | 3.16e-09 | 29 |
telencephalon | 3.16e-09 | 29 |
ecto-epithelium | 2.41e-08 | 73 |
anterior neural tube | 5.23e-08 | 40 |
regional part of forebrain | 1.76e-07 | 39 |
forebrain | 1.76e-07 | 39 |
future forebrain | 1.76e-07 | 39 |
regional part of cerebral cortex | 2.12e-07 | 17 |
anatomical conduit | 5.81e-07 | 122 |
cerebral cortex | 6.73e-07 | 21 |
cerebral hemisphere | 6.73e-07 | 21 |
pallium | 6.73e-07 | 21 |
occipital lobe | 9.24e-07 | 10 |
visual cortex | 9.24e-07 | 10 |
neocortex | 9.24e-07 | 10 |