FFCP PHASE1:Hg19::chr4:16900242..16900317,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:16900242..16900317,- to FFCP PHASE1:Hg19::chr4:16900242..16900317,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9079 | |EntrezGene=9079 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6533 | |HGNC=6533 | ||
|TSSclassifier=strong | |||
|UniProt=E9PFI4,D6RAT1,E7EX95,E9PGU0 | |UniProt=E9PFI4,D6RAT1,E7EX95,E9PGU0 | ||
|association_with_transcript=0bp_to_ENST00000502640,ENST00000506732,ENST00000508918,ENST00000510825,ENST00000512345_5end | |||
|cluster_id=chr4:16900242..16900317,- | |||
|coexpression_cluster_id=C1083 | |||
|description=CAGE_peak_1_at_LDB2_5end | |||
|id=chr4:16900242..16900317,- | |||
|ontology_enrichment_celltype=CL:0002139!1.03e-13!24;CL:0000115!1.44e-11!35;CL:0000071!3.91e-10!18;CL:0002546!3.91e-10!18;CL:0000055!7.66e-10!180;CL:0002078!1.19e-08!44;CL:0000057!1.93e-08!75;CL:0002620!7.73e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.98e-14;24!CL:0000071;1.64e-10;18!CL:0000115;2.25e-10;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.92e-14,24;CL:0000115,2.96e-12,36;CL:0000071,1.60e-10,18;CL:0002546,1.60e-10,18;CL:0002078,3.64e-09,45;CL:0000057,2.00e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002546;1.64e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.49e-27!115;UBERON:0001017!1.84e-19!82;UBERON:0005743!2.24e-19!86;UBERON:0000073!4.68e-19!94;UBERON:0001016!4.68e-19!94;UBERON:0003080!7.06e-19!42;UBERON:0002780!2.17e-18!41;UBERON:0001890!2.17e-18!41;UBERON:0006240!2.17e-18!41;UBERON:0004111!4.14e-18!241;UBERON:0001049!5.52e-18!57;UBERON:0005068!5.52e-18!57;UBERON:0006241!5.52e-18!57;UBERON:0007135!5.52e-18!57;UBERON:0000477!1.01e-17!286;UBERON:0001869!1.44e-17!32;UBERON:0001893!2.24e-17!34;UBERON:0002616!5.74e-17!59;UBERON:0000025!9.43e-17!194;UBERON:0002791!1.04e-16!33;UBERON:0002020!1.60e-16!34;UBERON:0003528!1.60e-16!34;UBERON:0000955!2.11e-16!69;UBERON:0006238!2.11e-16!69;UBERON:0002346!1.09e-15!90;UBERON:0002619!3.35e-15!22;UBERON:0000956!7.11e-15!25;UBERON:0000203!7.11e-15!25;UBERON:0001950!1.82e-14!20;UBERON:0003075!1.11e-13!86;UBERON:0007284!1.11e-13!86;UBERON:0000468!1.14e-12!659;UBERON:0003056!3.91e-12!61;UBERON:0000924!5.43e-12!173;UBERON:0006601!5.43e-12!173;UBERON:0004872!7.79e-12!84;UBERON:0000153!2.12e-11!129;UBERON:0007811!2.12e-11!129;UBERON:0000119!3.13e-11!312;UBERON:0000483!4.08e-11!309;UBERON:0000033!4.33e-11!123;UBERON:0002049!5.58e-11!79;UBERON:0007798!5.58e-11!79;UBERON:0000055!6.18e-11!69;UBERON:0004121!1.64e-10!169;UBERON:0001986!3.91e-10!18;UBERON:0004638!3.91e-10!18;UBERON:0004852!3.91e-10!18;UBERON:0000475!3.93e-10!365;UBERON:0001981!3.02e-09!60;UBERON:0007500!3.02e-09!60;UBERON:0004537!3.02e-09!60;UBERON:0006965!3.02e-09!60;UBERON:0001009!6.24e-09!113;UBERON:0000467!1.41e-08!625;UBERON:0004535!1.82e-08!110;UBERON:0000480!2.12e-08!626;UBERON:0000487!3.39e-08!22;UBERON:0006914!4.47e-08!25;UBERON:0003914!7.58e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.23e-16;32!UBERON:0002791;6.32e-16;32!UBERON:0002619;8.12e-16;22!UBERON:0001893;8.80e-16;34!UBERON:0000956;1.71e-15;25!UBERON:0000203;1.71e-15;25!UBERON:0003528;2.75e-15;34!UBERON:0002020;2.75e-15;34!UBERON:0001950;4.83e-15;20!UBERON:0002780;1.05e-13;41!UBERON:0001890;1.05e-13;41!UBERON:0004638;1.64e-10;18!UBERON:0001986;1.64e-10;18!UBERON:0004852;1.64e-10;18!UBERON:0000073;8.77e-10;53!UBERON:0002616;8.77e-10;53!UBERON:0001017;1.47e-08;75!UBERON:0000955;2.49e-08;68!UBERON:0000487;3.12e-08;22!UBERON:0006914;3.46e-08;25!UBERON:0007023;5.98e-08;114!UBERON:0000922;7.45e-08;49!UBERON:0001016;4.47e-07;83 | |||
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| ||
|short_description=p1@LDB2 | |||
}} | }} |
Latest revision as of 15:37, 16 September 2015
Short description: | p1@LDB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LDB2_5end |
Coexpression cluster: | C1083_lung_uterus_Endothelial_neuroectodermal_spleen_mesenchymal_occipital |
Association with transcript: | 0bp_to_ENST00000502640, ENST00000506732, ENST00000508918, ENST00000510825, ENST00000512345_5end |
EntrezGene: | LDB2 |
HGNC: | 6533 |
UniProt: | E9PFI4D6RAT1E7EX95E9PGU0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.92e-14 | 24 |
endothelial cell | 2.96e-12 | 36 |
blood vessel endothelial cell | 1.60e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.60e-10 | 18 |
meso-epithelial cell | 3.64e-09 | 45 |
fibroblast | 2.00e-07 | 76 |