FFCP PHASE1:Hg19::chrX:15872914..15872980,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:15872914..15872980,- to FFCP PHASE1:Hg19::chrX:15872914..15872980,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8905 | |EntrezGene=8905 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=560 | |HGNC=560 | ||
|TSSclassifier=strong | |||
|UniProt=E9PE78,A6NH01,B4DSU4,B7Z3M9 | |UniProt=E9PE78,A6NH01,B4DSU4,B7Z3M9 | ||
|association_with_transcript=0bp_to_ENST00000340245,ENST00000380291,ENST00000421527,ENST00000545766_5end | |||
|cluster_id=chrX:15872914..15872980,- | |||
|coexpression_cluster_id=C4866 | |||
|description=CAGE_peak_1_at_AP1S2_5end | |||
|id=chrX:15872914..15872980,- | |||
|ontology_enrichment_celltype=CL:0000766!2.47e-28!76;CL:0002194!1.37e-27!63;CL:0000576!1.37e-27!63;CL:0000040!1.37e-27!63;CL:0000559!1.37e-27!63;CL:0002009!3.41e-27!65;CL:0000557!8.05e-27!71;CL:0000839!2.09e-25!70;CL:0002057!2.43e-25!42;CL:0000860!1.35e-22!45;CL:0000738!6.98e-22!140;CL:0002087!1.11e-19!119;CL:0000763!5.50e-18!112;CL:0000049!5.50e-18!112;CL:0002031!6.45e-18!124;CL:0000037!3.29e-16!172;CL:0000566!3.29e-16!172;CL:0002032!5.42e-15!165;CL:0000837!5.42e-15!165;CL:0000988!1.90e-14!182;CL:0000147!3.93e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000473;8.26e-19;39!CL:0000234;8.26e-19;39!CL:0000860;1.16e-18;33!CL:0002057;1.16e-18;33!CL:0000576;2.54e-18;48!CL:0000766;1.12e-14;69!CL:0000147;3.91e-07;14!CL:0000763;6.24e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.96e-31,72;CL:0002194,1.12e-30,59;CL:0000576,1.12e-30,59;CL:0000040,1.12e-30,59;CL:0000559,1.12e-30,59;CL:0002009,3.64e-30,61;CL:0000557,1.49e-29,67;CL:0000473,3.83e-29,48;CL:0000234,3.83e-29,48;CL:0000839,4.69e-28,66;CL:0000860,2.43e-25,42;CL:0002057,2.43e-25,42;CL:0000738,2.89e-23,136;CL:0002087,4.01e-21,115;CL:0000763,2.12e-19,108;CL:0000049,2.12e-19,108;CL:0002031,3.19e-19,120;CL:0000037,3.53e-17,168;CL:0002032,6.17e-16,161;CL:0000837,6.17e-16,161;CL:0000988,4.49e-15,177;CL:0000147,3.93e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;1.92e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.19e-23!102;UBERON:0003061!1.19e-23!102;UBERON:0002193!3.99e-22!112;UBERON:0002371!1.28e-21!80;UBERON:0001474!1.73e-19!86;UBERON:0004765!2.60e-18!101;UBERON:0001434!2.60e-18!101;UBERON:0000073!1.43e-15!94;UBERON:0001016!1.43e-15!94;UBERON:0005743!3.08e-15!86;UBERON:0001017!5.35e-14!82;UBERON:0001049!6.40e-12!57;UBERON:0005068!6.40e-12!57;UBERON:0006241!6.40e-12!57;UBERON:0007135!6.40e-12!57;UBERON:0002405!7.21e-12!115;UBERON:0003075!1.18e-10!86;UBERON:0007284!1.18e-10!86;UBERON:0007023!2.52e-10!115;UBERON:0002346!4.38e-10!90;UBERON:0000955!8.09e-10!69;UBERON:0006238!8.09e-10!69;UBERON:0002204!1.13e-09!167;UBERON:0002616!1.15e-09!59;UBERON:0002020!1.19e-09!34;UBERON:0003528!1.19e-09!34;UBERON:0003080!1.82e-09!42;UBERON:0002780!2.31e-09!41;UBERON:0001890!2.31e-09!41;UBERON:0006240!2.31e-09!41;UBERON:0001893!2.76e-09!34;UBERON:0001869!3.78e-09!32;UBERON:0002791!5.94e-09!33;UBERON:0003056!1.55e-08!61;UBERON:0003081!3.31e-08!216;UBERON:0000956!1.99e-07!25;UBERON:0000203!1.99e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.39e-08;32!UBERON:0003528;1.43e-08;34!UBERON:0002020;1.43e-08;34!UBERON:0002791;2.21e-08;32!UBERON:0001893;2.31e-08;34!UBERON:0000956;1.95e-07;25!UBERON:0000203;1.95e-07;25!UBERON:0002780;4.43e-07;41!UBERON:0001890;4.43e-07;41!UBERON:0000073;6.80e-07;53!UBERON:0002616;6.80e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.65e-25,98;UBERON:0003061,1.65e-25,98;UBERON:0002193,9.10e-24,108;UBERON:0002371,1.02e-23,76;UBERON:0001474,2.57e-21,82;UBERON:0002405,1.09e-20,93;UBERON:0004765,8.31e-20,90;UBERON:0001434,1.04e-19,100;UBERON:0001016,3.23e-14,89;UBERON:0001017,7.06e-14,81;UBERON:0001049,8.21e-12,56;UBERON:0005068,8.21e-12,56;UBERON:0006241,8.21e-12,56;UBERON:0007135,8.21e-12,56;UBERON:0003075,3.27e-11,82;UBERON:0007284,3.27e-11,82;UBERON:0000073,6.38e-11,53;UBERON:0002616,6.38e-11,53;UBERON:0002346,1.37e-10,86;UBERON:0002204,1.52e-10,167;UBERON:0007023,3.61e-10,114;UBERON:0000955,1.06e-09,68;UBERON:0006238,1.06e-09,68;UBERON:0003528,1.19e-09,34;UBERON:0002020,1.19e-09,34;UBERON:0003081,2.05e-09,203;UBERON:0002780,2.31e-09,41;UBERON:0001890,2.31e-09,41;UBERON:0003080,2.31e-09,41;UBERON:0006240,2.31e-09,41;UBERON:0001893,2.76e-09,34;UBERON:0001869,3.78e-09,32;UBERON:0002791,6.73e-09,32;UBERON:0003056,1.17e-08,61;UBERON:0010314,3.03e-08,132;UBERON:0000956,1.99e-07,25;UBERON:0000203,1.99e-07,25 | |||
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| ||
|short_description=p1@AP1S2 | |||
}} | }} |
Latest revision as of 05:28, 20 September 2015
Short description: | p1@AP1S2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AP1S2_5end |
Coexpression cluster: | C4866_melanoma_CD14_Monocytederived_H9_Melanocyte_HES3GFP_iPS |
Association with transcript: | 0bp_to_ENST00000340245, ENST00000380291, ENST00000421527, ENST00000545766_5end |
EntrezGene: | AP1S2 |
HGNC: | 560 |
UniProt: | E9PE78A6NH01B4DSU4B7Z3M9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.96e-31 | 72 |
monopoietic cell | 1.12e-30 | 59 |
monocyte | 1.12e-30 | 59 |
monoblast | 1.12e-30 | 59 |
promonocyte | 1.12e-30 | 59 |
macrophage dendritic cell progenitor | 3.64e-30 | 61 |
granulocyte monocyte progenitor cell | 1.49e-29 | 67 |
defensive cell | 3.83e-29 | 48 |
phagocyte | 3.83e-29 | 48 |
myeloid lineage restricted progenitor cell | 4.69e-28 | 66 |
classical monocyte | 2.43e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.43e-25 | 42 |
leukocyte | 2.89e-23 | 136 |
nongranular leukocyte | 4.01e-21 | 115 |
myeloid cell | 2.12e-19 | 108 |
common myeloid progenitor | 2.12e-19 | 108 |
hematopoietic lineage restricted progenitor cell | 3.19e-19 | 120 |
hematopoietic stem cell | 3.53e-17 | 168 |
hematopoietic oligopotent progenitor cell | 6.17e-16 | 161 |
hematopoietic multipotent progenitor cell | 6.17e-16 | 161 |
hematopoietic cell | 4.49e-15 | 177 |
pigment cell | 3.93e-07 | 14 |