FF:10441-106E9: Difference between revisions

Latest revision as of 14:02, 3 June 2020

Name:	synovial sarcoma cell line:HS-SY-II
Species:	Human (Homo sapiens)
Library ID:	CNhs11244
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	synovium
dev stage	NA
sex	unknown
age	NA
cell type	unclassifiable
cell line	HS-SY-II
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005318

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11244		CAGE		DRX008018		DRR008890

Accession ID Hg19

Library id		BAM		CTSS
CNhs11244		DRZ000315		DRZ001700

Accession ID Hg38

Library id		BAM		CTSS
CNhs11244		DRZ011665		DRZ013050

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10066		download		download		download		download
NCig10130		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.207
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.601
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0636
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.168
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0563
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.38
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0636
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.12
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.121
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.501
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00966
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.504
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0696
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11244

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.11433e-5
MA0003.1	MA0003.1	0.0719
MA0004.1	MA0004.1	0.308
MA0006.1	MA0006.1	0.296
MA0007.1	MA0007.1	0.236
MA0009.1	MA0009.1	0.815
MA0014.1	MA0014.1	0.745
MA0017.1	MA0017.1	0.00425
MA0018.2	MA0018.2	0.229
MA0019.1	MA0019.1	0.627
MA0024.1	MA0024.1	4.8641e-4
MA0025.1	MA0025.1	0.355
MA0027.1	MA0027.1	0.681
MA0028.1	MA0028.1	0.204
MA0029.1	MA0029.1	0.632
MA0030.1	MA0030.1	0.335
MA0031.1	MA0031.1	0.662
MA0035.2	MA0035.2	0.641
MA0038.1	MA0038.1	0.00298
MA0039.2	MA0039.2	0.297
MA0040.1	MA0040.1	0.414
MA0041.1	MA0041.1	0.197
MA0042.1	MA0042.1	0.4
MA0043.1	MA0043.1	0.95
MA0046.1	MA0046.1	0.376
MA0047.2	MA0047.2	0.199
MA0048.1	MA0048.1	0.183
MA0050.1	MA0050.1	1.11938e-6
MA0051.1	MA0051.1	0.0019
MA0052.1	MA0052.1	5.47995e-4
MA0055.1	MA0055.1	0.0615
MA0057.1	MA0057.1	0.0421
MA0058.1	MA0058.1	0.273
MA0059.1	MA0059.1	0.749
MA0060.1	MA0060.1	8.21668e-12
MA0061.1	MA0061.1	0.0112
MA0062.2	MA0062.2	0.491
MA0065.2	MA0065.2	0.00167
MA0066.1	MA0066.1	0.0915
MA0067.1	MA0067.1	0.909
MA0068.1	MA0068.1	0.00102
MA0069.1	MA0069.1	0.888
MA0070.1	MA0070.1	0.506
MA0071.1	MA0071.1	0.578
MA0072.1	MA0072.1	0.559
MA0073.1	MA0073.1	0.537
MA0074.1	MA0074.1	0.456
MA0076.1	MA0076.1	0.112
MA0077.1	MA0077.1	0.544
MA0078.1	MA0078.1	0.671
MA0079.2	MA0079.2	0.142
MA0080.2	MA0080.2	7.65858e-13
MA0081.1	MA0081.1	0.124
MA0083.1	MA0083.1	0.36
MA0084.1	MA0084.1	0.795
MA0087.1	MA0087.1	0.895
MA0088.1	MA0088.1	0.919
MA0090.1	MA0090.1	0.664
MA0091.1	MA0091.1	0.201
MA0092.1	MA0092.1	0.222
MA0093.1	MA0093.1	0.242
MA0099.2	MA0099.2	8.46623e-20
MA0100.1	MA0100.1	0.31
MA0101.1	MA0101.1	0.0813
MA0102.2	MA0102.2	0.00777
MA0103.1	MA0103.1	0.08
MA0104.2	MA0104.2	0.159
MA0105.1	MA0105.1	0.0173
MA0106.1	MA0106.1	0.553
MA0107.1	MA0107.1	0.0246
MA0108.2	MA0108.2	0.102
MA0111.1	MA0111.1	0.867
MA0112.2	MA0112.2	7.39488e-5
MA0113.1	MA0113.1	0.142
MA0114.1	MA0114.1	0.039
MA0115.1	MA0115.1	0.617
MA0116.1	MA0116.1	0.0192
MA0117.1	MA0117.1	0.591
MA0119.1	MA0119.1	0.165
MA0122.1	MA0122.1	0.35
MA0124.1	MA0124.1	0.259
MA0125.1	MA0125.1	0.0517
MA0131.1	MA0131.1	0.179
MA0135.1	MA0135.1	0.298
MA0136.1	MA0136.1	3.66449e-9
MA0137.2	MA0137.2	0.00846
MA0138.2	MA0138.2	0.0427
MA0139.1	MA0139.1	0.114
MA0140.1	MA0140.1	0.398
MA0141.1	MA0141.1	0.108
MA0142.1	MA0142.1	0.59
MA0143.1	MA0143.1	0.664
MA0144.1	MA0144.1	0.00842
MA0145.1	MA0145.1	0.0366
MA0146.1	MA0146.1	0.0827
MA0147.1	MA0147.1	0.255
MA0148.1	MA0148.1	0.236
MA0149.1	MA0149.1	0.0276
MA0150.1	MA0150.1	7.66672e-5
MA0152.1	MA0152.1	0.365
MA0153.1	MA0153.1	0.214
MA0154.1	MA0154.1	0.0243
MA0155.1	MA0155.1	0.373
MA0156.1	MA0156.1	3.85732e-4
MA0157.1	MA0157.1	0.565
MA0159.1	MA0159.1	0.00395
MA0160.1	MA0160.1	0.0605
MA0162.1	MA0162.1	0.22
MA0163.1	MA0163.1	0.00429
MA0164.1	MA0164.1	0.823
MA0258.1	MA0258.1	0.00895
MA0259.1	MA0259.1	0.199

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11244

Novel motif	Logo	P-value
1	1	0.2
10	10	0.283
100	100	0.384
101	101	0.701
102	102	0.933
103	103	0.0385
104	104	0.582
105	105	0.429
106	106	0.00474
107	107	0.0878
108	108	0.356
109	109	0.0641
11	11	0.0713
110	110	0.381
111	111	0.576
112	112	0.0498
113	113	0.727
114	114	0.0267
115	115	0.731
116	116	0.912
117	117	0.348
118	118	0.308
119	119	0.122
12	12	0.474
120	120	0.7
121	121	0.666
122	122	0.364
123	123	0.85
124	124	0.835
125	125	0.625
126	126	0.795
127	127	0.0826
128	128	0.0419
129	129	0.31
13	13	0.748
130	130	0.0255
131	131	0.0739
132	132	0.591
133	133	0.649
134	134	0.924
135	135	0.137
136	136	0.976
137	137	0.0778
138	138	0.117
139	139	0.025
14	14	0.242
140	140	0.313
141	141	0.31
142	142	0.986
143	143	0.00548
144	144	0.902
145	145	0.824
146	146	0.278
147	147	0.502
148	148	0.00531
149	149	0.0991
15	15	0.181
150	150	0.702
151	151	0.218
152	152	0.0814
153	153	0.515
154	154	0.994
155	155	0.985
156	156	0.178
157	157	0.936
158	158	0.901
159	159	0.161
16	16	0.206
160	160	0.478
161	161	0.467
162	162	0.665
163	163	0.129
164	164	0.27
165	165	0.504
166	166	0.498
167	167	0.713
168	168	0.0217
169	169	0.0106
17	17	0.212
18	18	0.142
19	19	0.155
2	2	0.106
20	20	0.393
21	21	0.512
22	22	0.103
23	23	0.0379
24	24	0.8
25	25	0.425
26	26	0.437
27	27	0.0935
28	28	0.66
29	29	0.638
3	3	0.285
30	30	0.491
31	31	0.422
32	32	0.0326
33	33	0.385
34	34	0.443
35	35	0.554
36	36	0.181
37	37	0.0628
38	38	0.373
39	39	0.624
4	4	0.655
40	40	0.181
41	41	0.078
42	42	0.827
43	43	0.154
44	44	0.272
45	45	0.308
46	46	0.187
47	47	0.473
48	48	0.323
49	49	0.284
5	5	0.264
50	50	0.723
51	51	0.471
52	52	0.186
53	53	0.51
54	54	0.462
55	55	0.0493
56	56	0.407
57	57	0.756
58	58	0.285
59	59	0.0282
6	6	0.572
60	60	0.0353
61	61	0.415
62	62	0.105
63	63	0.284
64	64	0.295
65	65	0.0934
66	66	0.203
67	67	0.971
68	68	0.133
69	69	0.417
7	7	0.511
70	70	9.67851e-4
71	71	0.21
72	72	0.238
73	73	0.091
74	74	0.124
75	75	0.151
76	76	0.818
77	77	0.223
78	78	0.802
79	79	0.245
8	8	0.31
80	80	0.0344
81	81	0.538
82	82	0.0108
83	83	0.288
84	84	0.874
85	85	0.00579
86	86	0.261
87	87	0.156
88	88	0.696
89	89	0.0227
9	9	0.182
90	90	0.415
91	91	0.444
92	92	0.0276
93	93	0.324
94	94	0.182
95	95	0.36
96	96	0.132
97	97	0.792
98	98	0.179
99	99	0.704

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11244

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000214 synovial cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100400 sarcoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000214 (synovial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0006914 (squamous epithelium)
0004905 (articulation)
0000486 (multilaminar epithelium)
0006915 (stratified squamous epithelium)
0007616 (layer of synovial tissue)
0000042 (serous membrane)
0000982 (skeletal joint)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002217 (synovial joint)
0002018 (synovial membrane of synovial joint)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
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-|ancestors_in_disease_facet=DOID:0050687,DOID:1115,DOID:14566,DOID:162,DOID:4
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+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400
 |comment=
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 |creation_date=
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+|datafreeze_phase=2
 |def=
+|expression_enrichment_score=chr12:54379029..54379057,+!p2@HOXC10!2.36!228.77!HOXC10;;chr14:29234581..29234601,+!p2@FOXG1!2.18!151.15!FOXG1;;chr7:19157248..19157268,-!p1@TWIST1!2.12!348.20!TWIST1;;chr2:223163706..223163730,-!p1@PAX3!2.00!99.87!PAX3;;chr16:86544113..86544145,+!p1@FOXF1!1.99!119.43!FOXF1;;chr12:54393880..54393962,+!p1@HOXC9!1.95!87.41!HOXC9;;chr5:2751762..2751784,-!p1@IRX2!1.89!76.68!IRX2;;chr12:54348655..54348693,+!p1@HOXC12!1.86!71.15!HOXC12;;chr15:57511609..57511651,+!p2@TCF12!1.85!113.91!TCF12;;chrX:85403445..85403479,+!p2@DACH2!1.84!68.63!DACH2;;chr13:72441074..72441172,-!p2@DACH1!1.83!67.37!DACH1;;chr13:72441315..72441454,-!p1@DACH1!1.74!104.13!DACH1;;chr3:147127177..147127194,+!p2@ZIC1!1.74!53.64!ZIC1;;chr12:54348702..54348715,+!p2@HOXC12!1.69!47.49!HOXC12;;chr3:147127142..147127168,+!p1@ZIC1!1.68!47.33!ZIC1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.67!45.91!EN2;;chr5:174151612..174151633,+!p2@MSX2!1.64!42.28!MSX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.62!65.00!FOXQ1;;chr5:174151553..174151610,+!p1@MSX2!1.61!65.16!MSX2;;chr17:46682321..46682362,-!p1@HOXB6!1.59!38.34!HOXB6;;chr13:100634031..100634045,+!p1@ZIC2!1.59!38.18!ZIC2;;chr14:29235961..29236008,+!p1@FOXG1!1.57!36.29!FOXG1;;chr10:131762504..131762555,-!p1@EBF3!1.56!35.50!EBF3;;chr12:54384370..54384382,+!p5@HOXC6!1.52!31.87!HOXC6;;chr8:106330656..106330684,+!p1@ZFPM2!1.51!80.94!ZFPM2;;chr2:172967621..172967637,-!p1@DLX2!1.48!76.36!DLX2;;chr6:1389789..1389821,+!p1@FOXF2!1.47!38.81!FOXF2;;chr9:126774018..126774055,+!p1@LHX2!1.47!28.24!LHX2;;chr2:237077022..237077038,-!p1@GBX2!1.46!28.08!GBX2;;chr15:42749722..42749739,-!p2@ZFP106!1.44!47.17!ZFP106;;chr5:2751785..2751808,-!p2@IRX2!1.43!25.72!IRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.42!25.40!HOXC5;;chr15:68115672..68115691,+!p1@SKOR1!1.42!25.09!SKOR1;;chrX:84498989..84499003,+!p1@ZNF711!1.38!31.40!ZNF711;;chr4:4861385..4861398,+!p1@MSX1!1.37!65.00!MSX1;;chr2:172949484..172949522,+!p1@DLX1!1.36!22.09!DLX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.34!TFAP2A;;chr2:176964515..176964540,+!p1@HOXD12!1.35!21.61!HOXD12;;chr14:61116183..61116208,-!p1@SIX1!1.34!77.47!SIX1;;chr2:60780753..60780800,-!p1@BCL11A!1.33!97.98!BCL11A;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!25.09!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!1.32!118.80!ID4;;chr19:47523058..47523114,+!p1@NPAS1!1.32!19.72!NPAS1;;chr7:156803329..156803362,-!p1@MNX1!1.30!18.93!MNX1;;chr9:96717629..96717644,-!p1@BARX1!1.29!18.62!BARX1;;chr2:175199697..175199706,+!p2@SP9!1.28!17.99!SP9;;chr18:72922743..72922761,+!p3@TSHZ1!1.27!56.48!TSHZ1;;chr17:46667594..46667619,-!p1@HOXB3!1.27!17.51!HOXB3;;chr17:41622765..41622821,-!p2@ETV4!1.26!25.87!ETV4;;chr12:66218598..66218645,+!p2@HMGA2!1.25!76.05!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!1.25!21.46!ZFPM2;;chr12:54366894..54366922,+!p2@HOXC11!1.25!16.88!HOXC11;;chr8:77593474..77593612,+!p1@ZFHX4!1.24!67.84!ZFHX4;;chr9:1050331..1050363,+!p1@DMRT2!1.24!16.57!DMRT2;;chr13:100623375..100623425,-!p1@ZIC5!1.24!16.41!ZIC5;;chr13:100634130..100634143,+!p3@ZIC2!1.24!16.41!ZIC2;;chr12:66218183..66218209,+!p4@HMGA2!1.23!30.77!HMGA2;;chr2:185463247..185463263,+!p1@ZNF804A!1.23!28.40!ZNF804A;;chr1:221052994..221053008,+!p6@HLX!1.23!18.77!HLX;;chr6:10412392..10412409,-!p4@TFAP2A!1.23!18.14!TFAP2A;;chr3:147123837..147123848,-!p7@ZIC4!1.23!16.09!ZIC4;;chr9:132427883..132427951,+!p2@PRRX2!1.23!16.09!PRRX2;;chr11:129245526..129245553,+!p1@BARX2!1.21!15.30!BARX2;;chr12:66218255..66218304,+!p3@HMGA2!1.20!39.60!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!1.20!14.83!TCF12;;chr3:147127489..147127503,+!p11@ZIC1!1.20!14.67!ZIC1;;chr8:144512897..144512903,-!p1@MAFA!1.20!14.67!MAFA;;chr12:54366975..54367001,+!p1@HOXC11!1.19!14.36!HOXC11;;chr9:126773880..126773895,+!p2@LHX2!1.19!14.36!LHX2;;chr12:54332652..54332671,+!p2@HOXC13!1.18!14.20!HOXC13;;chr14:29236269..29236285,+!p3@FOXG1!1.18!14.20!FOXG1;;chr12:66218378..66218401,+!p6@HMGA2!1.17!21.30!HMGA2;;chr12:54378923..54378966,+!p1@HOXC10!1.17!13.88!HOXC10;;chr5:153857778..153857794,-!p1@HAND1!1.17!13.88!HAND1;;chr4:8873545..8873583,-!p1@HMX1!1.17!13.73!HMX1;;chr2:60780607..60780624,-!p2@BCL11A!1.16!40.86!BCL11A;;chr2:172967242..172967265,-!p2@DLX2!1.15!13.10!DLX2;;chr8:60031682..60031710,-!p2@TOX!1.14!20.83!TOX;;chr12:66218212..66218244,+!p5@HMGA2!1.14!18.46!HMGA2;;chr12:54366949..54366973,+!p3@HOXC11!1.14!12.94!HOXC11;;chr7:27192185..27192209,-!p1@HOXA3!1.14!12.78!HOXA3;;chr20:61051039..61051057,-!p1@GATA5!1.13!12.62!GATA5;;chr12:66218836..66218888,+!p1@HMGA2!1.12!114.70!HMGA2;;chr12:54332608..54332636,+!p1@HOXC13!1.12!12.31!HOXC13;;chr12:54379066..54379073,+!p11@HOXC10!1.12!12.15!HOXC10;;chr13:100634004..100634025,+!p2@ZIC2!1.12!12.15!ZIC2;;chr16:1031762..1031781,+!p1@SOX8!1.12!12.15!SOX8;;chrX:84499081..84499115,+!p2@ZNF711!1.11!17.67!ZNF711;;chr13:100638100..100638115,+!p4@ZIC2!1.11!11.99!ZIC2;;chr1:214161272..214161322,+!p1@PROX1!1.10!16.57!PROX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.10!12.31!GLIS1;;chr4:109089901..1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+|ffid_belonging_in_development=CL:0000134,CL:0000222
 |fonse_cell_line=FF:0100400
 |fonse_cell_line_closure=FF:0100400
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10441-106E9
-|is_a=CL:0000214;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100400
+|is_a=CL:0000214;;EFO:0002091;;FF:0000210;;FF:0100400
+|is_obsolete=
+|library_id=CNhs11244
+|library_id_phase_based=2:CNhs11244
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10441
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10441
 |name=synovial sarcoma cell line:HS-SY-II
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=NCig10066,,,
 |profile_hcage=CNhs11244,LSID757,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=106
 |rna_catalog_number=
@@ Line 54: / Line 76: @@
 |rna_rin=9.5
 |rna_sample_type=total RNA
-|rna_tube_id=106E9
+|rna_tube_id=1.06E+11
 |rna_weight_ug=20.71675
 |sample_age=
+|sample_category=cell lines
 |sample_cell_catalog=RCB2231
 |sample_cell_line=HS-SY-II
@@ Line 69: / Line 92: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.32901864794922e-299!GO:0043231;intracellular membrane-bound organelle;5.26786116796655e-269!GO:0043227;membrane-bound organelle;5.26786116796655e-269!GO:0043226;organelle;6.87509843011092e-267!GO:0043229;intracellular organelle;4.56854200515146e-266!GO:0044422;organelle part;5.2318010783095e-169!GO:0044446;intracellular organelle part;1.56217342411911e-167!GO:0005634;nucleus;1.41022700290284e-155!GO:0005737;cytoplasm;2.1072666973381e-146!GO:0044238;primary metabolic process;2.24634622883632e-118!GO:0044237;cellular metabolic process;2.24634622883632e-118!GO:0043170;macromolecule metabolic process;2.08870651291858e-117!GO:0032991;macromolecular complex;8.10272884356858e-115!GO:0044444;cytoplasmic part;1.66896207483649e-104!GO:0044428;nuclear part;1.73308088840942e-104!GO:0043233;organelle lumen;2.55064552781414e-98!GO:0031974;membrane-enclosed lumen;2.55064552781414e-98!GO:0030529;ribonucleoprotein complex;6.47326739706822e-95!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.79444237433505e-92!GO:0003723;RNA binding;5.24946171170371e-90!GO:0010467;gene expression;2.6986088601682e-88!GO:0043283;biopolymer metabolic process;2.26250839595398e-85!GO:0003676;nucleic acid binding;3.0318564120082e-74!GO:0005739;mitochondrion;1.93849047340051e-67!GO:0005515;protein binding;1.88998994601093e-66!GO:0006396;RNA processing;2.49552770754921e-65!GO:0031981;nuclear lumen;3.58000037847965e-65!GO:0043234;protein complex;1.27972629334319e-58!GO:0016043;cellular component organization and biogenesis;2.80148702561984e-56!GO:0016070;RNA metabolic process;2.46767712149006e-55!GO:0005840;ribosome;1.94301220909322e-52!GO:0006259;DNA metabolic process;6.6436710730974e-51!GO:0016071;mRNA metabolic process;3.35668084499302e-49!GO:0006412;translation;2.69408601461934e-47!GO:0044429;mitochondrial part;4.76227104978461e-47!GO:0006996;organelle organization and biogenesis;1.13781837550329e-45!GO:0003735;structural constituent of ribosome;8.91125069221717e-45!GO:0008380;RNA splicing;1.62649646812577e-44!GO:0043228;non-membrane-bound organelle;3.08274074220715e-44!GO:0043232;intracellular non-membrane-bound organelle;3.08274074220715e-44!GO:0006397;mRNA processing;7.47235134636018e-44!GO:0005654;nucleoplasm;6.91201937588851e-43!GO:0031967;organelle envelope;4.80537643173677e-42!GO:0031975;envelope;8.45431955617879e-42!GO:0031090;organelle membrane;6.44779539753666e-41!GO:0033279;ribosomal subunit;3.62026626291508e-39!GO:0033036;macromolecule localization;1.01952843730861e-38!GO:0015031;protein transport;1.1710387929439e-37!GO:0065003;macromolecular complex assembly;2.8628755316733e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.32976869902778e-37!GO:0019538;protein metabolic process;4.85150523592257e-36!GO:0044451;nucleoplasm part;1.38510895098798e-35!GO:0046907;intracellular transport;6.28231839297156e-35!GO:0007049;cell cycle;1.23085652588764e-34!GO:0008104;protein localization;2.77159546316858e-34!GO:0045184;establishment of protein localization;1.44037967178271e-33!GO:0044249;cellular biosynthetic process;1.48713962165712e-33!GO:0022607;cellular component assembly;2.66518089085097e-32!GO:0009059;macromolecule biosynthetic process;2.82182991179759e-32!GO:0044267;cellular protein metabolic process;2.96333606686636e-32!GO:0009058;biosynthetic process;1.04741556632854e-31!GO:0044260;cellular macromolecule metabolic process;1.26723294353542e-31!GO:0005694;chromosome;2.70343006966372e-31!GO:0005681;spliceosome;2.44391381890973e-30!GO:0000166;nucleotide binding;2.92392699387939e-30!GO:0005829;cytosol;4.40546723653413e-30!GO:0005740;mitochondrial envelope;4.7738716346074e-28!GO:0006886;intracellular protein transport;5.46346360017428e-28!GO:0019866;organelle inner membrane;2.23070237603553e-27!GO:0006974;response to DNA damage stimulus;2.7341174889023e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.58945236906014e-27!GO:0044427;chromosomal part;4.49868411883322e-27!GO:0022402;cell cycle process;7.40416287271015e-27!GO:0051276;chromosome organization and biogenesis;1.71989559260242e-26!GO:0031966;mitochondrial membrane;3.06356842409472e-26!GO:0000278;mitotic cell cycle;2.87441491809251e-25!GO:0005743;mitochondrial inner membrane;5.9661509275241e-25!GO:0006281;DNA repair;8.0130733773076e-24!GO:0051301;cell division;1.11205734375219e-23!GO:0016462;pyrophosphatase activity;3.87803810696257e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.6927707632119e-23!GO:0017111;nucleoside-triphosphatase activity;6.36568210569971e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;8.6728794528838e-23!GO:0006119;oxidative phosphorylation;2.12855949342059e-22!GO:0005730;nucleolus;4.38363122790941e-22!GO:0031980;mitochondrial lumen;4.38363122790941e-22!GO:0005759;mitochondrial matrix;4.38363122790941e-22!GO:0044445;cytosolic part;5.12615244132944e-22!GO:0006325;establishment and/or maintenance of chromatin architecture;6.1099025412246e-22!GO:0044455;mitochondrial membrane part;7.22402962596986e-22!GO:0051649;establishment of cellular localization;1.38709933525051e-21!GO:0051641;cellular localization;2.38623682848813e-21!GO:0015935;small ribosomal subunit;2.78219543511866e-21!GO:0006323;DNA packaging;4.35293551761794e-21!GO:0008134;transcription factor binding;1.28259211450743e-20!GO:0006366;transcription from RNA polymerase II promoter;1.30061476301162e-20!GO:0022618;protein-RNA complex assembly;1.43716398385986e-20!GO:0019222;regulation of metabolic process;1.54537504800249e-20!GO:0006457;protein folding;2.52031681336127e-20!GO:0022403;cell cycle phase;2.97458601737585e-20!GO:0000087;M phase of mitotic cell cycle;4.76044543079386e-20!GO:0050794;regulation of cellular process;7.95805847232137e-20!GO:0007067;mitosis;1.51028670292763e-19!GO:0006350;transcription;2.77394537119667e-19!GO:0032553;ribonucleotide binding;3.51882092814751e-19!GO:0032555;purine ribonucleotide binding;3.51882092814751e-19!GO:0009719;response to endogenous stimulus;3.73346043676781e-19!GO:0015934;large ribosomal subunit;4.31916057475973e-19!GO:0006260;DNA replication;4.99681332451661e-19!GO:0016874;ligase activity;6.0415615455835e-19!GO:0006512;ubiquitin cycle;7.8927378677158e-19!GO:0017076;purine nucleotide binding;2.02210490229929e-18!GO:0031323;regulation of cellular metabolic process;5.80601118731411e-18!GO:0000279;M phase;6.36601671290592e-18!GO:0005746;mitochondrial respiratory chain;1.02102752666728e-17!GO:0004386;helicase activity;2.01432173645221e-17!GO:0008135;translation factor activity, nucleic acid binding;2.72790643271423e-17!GO:0003677;DNA binding;3.26930144770236e-17!GO:0042254;ribosome biogenesis and assembly;4.76440492506093e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;1.19090854598202e-16!GO:0000375;RNA splicing, via transesterification reactions;1.19090854598202e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.19090854598202e-16!GO:0044265;cellular macromolecule catabolic process;1.19534342826841e-16!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.31368709359551e-16!GO:0031965;nuclear membrane;1.35314582615136e-16!GO:0005761;mitochondrial ribosome;1.58743632323264e-16!GO:0000313;organellar ribosome;1.58743632323264e-16!GO:0010468;regulation of gene expression;1.71244224153046e-16!GO:0032774;RNA biosynthetic process;2.27395582232698e-16!GO:0000785;chromatin;3.18881248107917e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;3.26145386113106e-16!GO:0005524;ATP binding;3.35168013416761e-16!GO:0006605;protein targeting;3.49181617549849e-16!GO:0006351;transcription, DNA-dependent;3.6319977919004e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.8912511068115e-16!GO:0032559;adenyl ribonucleotide binding;4.75309245583155e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.08951645034581e-16!GO:0019941;modification-dependent protein catabolic process;5.10142116489239e-16!GO:0043632;modification-dependent macromolecule catabolic process;5.10142116489239e-16!GO:0044257;cellular protein catabolic process;1.03725423855923e-15!GO:0016887;ATPase activity;1.07019052756842e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.22287821160308e-15!GO:0003954;NADH dehydrogenase activity;1.22287821160308e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.22287821160308e-15!GO:0042623;ATPase activity, coupled;2.95223150188124e-15!GO:0012505;endomembrane system;2.95935694913788e-15!GO:0030554;adenyl nucleotide binding;3.21065448483047e-15!GO:0016604;nuclear body;4.23730999190061e-15!GO:0065004;protein-DNA complex assembly;5.20565761212053e-15!GO:0005635;nuclear envelope;6.24399864703392e-15!GO:0006333;chromatin assembly or disassembly;6.593571620142e-15!GO:0044453;nuclear membrane part;7.92894600310319e-15!GO:0043285;biopolymer catabolic process;1.09803736268552e-14!GO:0008026;ATP-dependent helicase activity;1.16391758008986e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.89781297747417e-14!GO:0045449;regulation of transcription;2.57364361142282e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.0053468709493e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.5137213830513e-14!GO:0042773;ATP synthesis coupled electron transport;4.5137213830513e-14!GO:0050789;regulation of biological process;4.78694496426275e-14!GO:0006399;tRNA metabolic process;7.22165436324199e-14!GO:0015630;microtubule cytoskeleton;7.681581031188e-14!GO:0048770;pigment granule;1.01944831317722e-13!GO:0042470;melanosome;1.01944831317722e-13!GO:0009057;macromolecule catabolic process;1.28751299156027e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.29171610019709e-13!GO:0045271;respiratory chain complex I;1.29171610019709e-13!GO:0005747;mitochondrial respiratory chain complex I;1.29171610019709e-13!GO:0016568;chromatin modification;2.18030674141949e-13!GO:0016607;nuclear speck;2.34852175269986e-13!GO:0003712;transcription cofactor activity;2.96261804359316e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.00111380373967e-13!GO:0051082;unfolded protein binding;4.20693647967452e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.36252161047974e-13!GO:0050657;nucleic acid transport;4.43567450685794e-13!GO:0051236;establishment of RNA localization;4.43567450685794e-13!GO:0050658;RNA transport;4.43567450685794e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.75307423751499e-13!GO:0005783;endoplasmic reticulum;6.10684761024148e-13!GO:0005643;nuclear pore;6.10684761024148e-13!GO:0006355;regulation of transcription, DNA-dependent;6.87799145669107e-13!GO:0006913;nucleocytoplasmic transport;6.95937880084346e-13!GO:0051726;regulation of cell cycle;7.21692125727936e-13!GO:0006403;RNA localization;7.62233501382632e-13!GO:0000074;regulation of progression through cell cycle;7.8570914442456e-13!GO:0003743;translation initiation factor activity;7.8570914442456e-13!GO:0030163;protein catabolic process;9.24894615918738e-13!GO:0006413;translational initiation;1.05346878983497e-12!GO:0051169;nuclear transport;2.21051523591774e-12!GO:0065002;intracellular protein transport across a membrane;2.67019277901503e-12!GO:0005667;transcription factor complex;5.05046036350065e-12!GO:0044432;endoplasmic reticulum part;5.11887903293285e-12!GO:0006364;rRNA processing;6.33573965397913e-12!GO:0048193;Golgi vesicle transport;8.54328200306864e-12!GO:0016072;rRNA metabolic process;1.6326164566289e-11!GO:0006446;regulation of translational initiation;2.7416645386879e-11!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.79968715108228e-11!GO:0008565;protein transporter activity;4.8600891547865e-11!GO:0051028;mRNA transport;5.49782483000104e-11!GO:0043412;biopolymer modification;5.50416710215354e-11!GO:0046930;pore complex;5.62342626055242e-11!GO:0051186;cofactor metabolic process;5.82903099178714e-11!GO:0044248;cellular catabolic process;6.08885673343725e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.72964861787352e-10!GO:0009259;ribonucleotide metabolic process;2.6131991804221e-10!GO:0043566;structure-specific DNA binding;2.65783046206956e-10!GO:0006334;nucleosome assembly;4.25014866426746e-10!GO:0000775;chromosome, pericentric region;5.62483712526044e-10!GO:0006163;purine nucleotide metabolic process;6.78255706950496e-10!GO:0031497;chromatin assembly;7.35718804000034e-10!GO:0003682;chromatin binding;9.64785770294625e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.04987054833118e-09!GO:0017038;protein import;1.13054596762294e-09!GO:0045333;cellular respiration;1.98500047845827e-09!GO:0006164;purine nucleotide biosynthetic process;2.06714615267983e-09!GO:0006261;DNA-dependent DNA replication;2.09022542631882e-09!GO:0009260;ribonucleotide biosynthetic process;2.30559274340892e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.31005212159826e-09!GO:0005794;Golgi apparatus;3.49254070439646e-09!GO:0009150;purine ribonucleotide metabolic process;3.69911779230361e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.92316215842961e-09!GO:0009060;aerobic respiration;4.70531044184758e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.60135185615706e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.60135185615706e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.60135185615706e-09!GO:0003697;single-stranded DNA binding;7.03549883758089e-09!GO:0006464;protein modification process;8.02209426523438e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.02894144326136e-08!GO:0006732;coenzyme metabolic process;1.1001119756334e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.11734971294311e-08!GO:0008639;small protein conjugating enzyme activity;1.1377895612607e-08!GO:0016563;transcription activator activity;1.16105431481336e-08!GO:0043038;amino acid activation;1.30379086156461e-08!GO:0006418;tRNA aminoacylation for protein translation;1.30379086156461e-08!GO:0043039;tRNA aminoacylation;1.30379086156461e-08!GO:0005819;spindle;1.38049680250699e-08!GO:0009055;electron carrier activity;1.48988885426821e-08!GO:0005813;centrosome;1.79597598730429e-08!GO:0006461;protein complex assembly;1.81225598078864e-08!GO:0031324;negative regulation of cellular metabolic process;1.9481731953761e-08!GO:0043687;post-translational protein modification;1.9481731953761e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.02528741765517e-08!GO:0004842;ubiquitin-protein ligase activity;2.02862774456485e-08!GO:0009141;nucleoside triphosphate metabolic process;2.47668091640688e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.5896472570813e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.5896472570813e-08!GO:0019787;small conjugating protein ligase activity;2.64676452204167e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.69191590412192e-08!GO:0016779;nucleotidyltransferase activity;2.77480517771699e-08!GO:0007005;mitochondrion organization and biogenesis;3.24663306903317e-08!GO:0003702;RNA polymerase II transcription factor activity;3.31699149729887e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.70192070413068e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.70192070413068e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.73008167366698e-08!GO:0016481;negative regulation of transcription;4.42636938436705e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.85850042522631e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.85850042522631e-08!GO:0007051;spindle organization and biogenesis;5.44821614264268e-08!GO:0005789;endoplasmic reticulum membrane;5.87526488563691e-08!GO:0005815;microtubule organizing center;6.30180477093682e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.89822524751299e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.40253115366337e-08!GO:0015986;ATP synthesis coupled proton transport;8.10917554462369e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.10917554462369e-08!GO:0003899;DNA-directed RNA polymerase activity;8.17924779237875e-08!GO:0065007;biological regulation;8.2641309569796e-08!GO:0000245;spliceosome assembly;1.07538132317972e-07!GO:0006099;tricarboxylic acid cycle;1.38403204758276e-07!GO:0046356;acetyl-CoA catabolic process;1.38403204758276e-07!GO:0016564;transcription repressor activity;1.61714908477809e-07!GO:0016192;vesicle-mediated transport;1.84730257020738e-07!GO:0019829;cation-transporting ATPase activity;2.00961464843335e-07!GO:0009892;negative regulation of metabolic process;2.0769644686259e-07!GO:0006084;acetyl-CoA metabolic process;2.77746533410102e-07!GO:0016881;acid-amino acid ligase activity;2.7848466881458e-07!GO:0003713;transcription coactivator activity;3.11441554039637e-07!GO:0008094;DNA-dependent ATPase activity;3.24173958399723e-07!GO:0003724;RNA helicase activity;3.38337788218828e-07!GO:0051329;interphase of mitotic cell cycle;3.48439242188689e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.51474015042679e-07!GO:0043623;cellular protein complex assembly;4.28053780331541e-07!GO:0005874;microtubule;4.4958713303249e-07!GO:0032446;protein modification by small protein conjugation;4.92180076758945e-07!GO:0048523;negative regulation of cellular process;5.34606012962684e-07!GO:0000075;cell cycle checkpoint;5.90045823781067e-07!GO:0006606;protein import into nucleus;6.85686022885128e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.88987223905092e-07!GO:0051170;nuclear import;8.30079523583386e-07!GO:0046034;ATP metabolic process;8.55905333899141e-07!GO:0016853;isomerase activity;9.1744173250152e-07!GO:0009109;coenzyme catabolic process;9.61796347644976e-07!GO:0006754;ATP biosynthetic process;1.01253865128668e-06!GO:0006753;nucleoside phosphate metabolic process;1.01253865128668e-06!GO:0016567;protein ubiquitination;1.04297475137054e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.3360067969249e-06!GO:0045259;proton-transporting ATP synthase complex;1.60223311190886e-06!GO:0016363;nuclear matrix;1.71665626008713e-06!GO:0005788;endoplasmic reticulum lumen;1.73927425423401e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.74845530325921e-06!GO:0008033;tRNA processing;2.50658379547877e-06!GO:0051325;interphase;3.15062314098982e-06!GO:0016859;cis-trans isomerase activity;3.23267815471732e-06!GO:0000151;ubiquitin ligase complex;3.27243508444199e-06!GO:0051187;cofactor catabolic process;3.41514636992333e-06!GO:0007017;microtubule-based process;3.91415306834643e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.41570168530633e-06!GO:0051427;hormone receptor binding;4.60485315533228e-06!GO:0044452;nucleolar part;4.78222865175761e-06!GO:0005762;mitochondrial large ribosomal subunit;4.8824800215422e-06!GO:0000315;organellar large ribosomal subunit;4.8824800215422e-06!GO:0006613;cotranslational protein targeting to membrane;6.18346308361133e-06!GO:0005657;replication fork;6.24114994135079e-06!GO:0051168;nuclear export;6.65446555936194e-06!GO:0051052;regulation of DNA metabolic process;6.85404566877779e-06!GO:0000776;kinetochore;7.0549434087954e-06!GO:0006302;double-strand break repair;8.17162074045749e-06!GO:0045786;negative regulation of progression through cell cycle;8.46434454258439e-06!GO:0016740;transferase activity;8.91713385290193e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.0000549588661e-06!GO:0003924;GTPase activity;9.18354414558878e-06!GO:0035257;nuclear hormone receptor binding;1.00220983279679e-05!GO:0003714;transcription corepressor activity;1.08398621695513e-05!GO:0000314;organellar small ribosomal subunit;1.10680707614881e-05!GO:0005763;mitochondrial small ribosomal subunit;1.10680707614881e-05!GO:0006626;protein targeting to mitochondrion;1.36429618939957e-05!GO:0006352;transcription initiation;1.46309511656557e-05!GO:0051188;cofactor biosynthetic process;1.57682574277526e-05!GO:0006839;mitochondrial transport;1.86838876593969e-05!GO:0048519;negative regulation of biological process;1.88290722662838e-05!GO:0008186;RNA-dependent ATPase activity;1.9359889230093e-05!GO:0009056;catabolic process;2.03734817595309e-05!GO:0003690;double-stranded DNA binding;2.33136337570691e-05!GO:0003678;DNA helicase activity;2.33396009155069e-05!GO:0048475;coated membrane;2.40236557409255e-05!GO:0030117;membrane coat;2.40236557409255e-05!GO:0000786;nucleosome;2.51921174328762e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;2.58159388568612e-05!GO:0008654;phospholipid biosynthetic process;2.63258682580569e-05!GO:0030120;vesicle coat;2.639498015061e-05!GO:0030662;coated vesicle membrane;2.639498015061e-05!GO:0044440;endosomal part;2.639498015061e-05!GO:0010008;endosome membrane;2.639498015061e-05!GO:0005525;GTP binding;2.87889337777842e-05!GO:0005768;endosome;2.9154598541565e-05!GO:0009117;nucleotide metabolic process;3.00924986891482e-05!GO:0016251;general RNA polymerase II transcription factor activity;3.06714996869187e-05!GO:0043021;ribonucleoprotein binding;3.25778759462788e-05!GO:0003684;damaged DNA binding;3.61055178281181e-05!GO:0045454;cell redox homeostasis;4.50121404000391e-05!GO:0045892;negative regulation of transcription, DNA-dependent;4.60030978255523e-05!GO:0006752;group transfer coenzyme metabolic process;4.72265032548967e-05!GO:0005793;ER-Golgi intermediate compartment;5.66396803434387e-05!GO:0003729;mRNA binding;5.80125838640146e-05!GO:0004004;ATP-dependent RNA helicase activity;6.07121751851092e-05!GO:0006310;DNA recombination;6.67811646254125e-05!GO:0005839;proteasome core complex (sensu Eukaryota);7.36201035137476e-05!GO:0000228;nuclear chromosome;8.8684952344722e-05!GO:0007052;mitotic spindle organization and biogenesis;9.83319902626473e-05!GO:0030880;RNA polymerase complex;9.95286719011942e-05!GO:0006414;translational elongation;0.000100679192801862!GO:0000792;heterochromatin;0.000106058399395854!GO:0007059;chromosome segregation;0.000106158532509533!GO:0012501;programmed cell death;0.00011856386791086!GO:0006383;transcription from RNA polymerase III promoter;0.000129743036905057!GO:0007010;cytoskeleton organization and biogenesis;0.000156790837199241!GO:0006915;apoptosis;0.000159703748188963!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000159703748188963!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000168374418079084!GO:0007006;mitochondrial membrane organization and biogenesis;0.000172921000121006!GO:0043681;protein import into mitochondrion;0.000173067394776006!GO:0008168;methyltransferase activity;0.000173232994965471!GO:0006402;mRNA catabolic process;0.00019104108933353!GO:0016741;transferase activity, transferring one-carbon groups;0.000191362370140574!GO:0004298;threonine endopeptidase activity;0.000214339751725164!GO:0051246;regulation of protein metabolic process;0.000216726891722284!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000236140939849324!GO:0007093;mitotic cell cycle checkpoint;0.000238464135150741!GO:0006338;chromatin remodeling;0.000239192738785255!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00025432851619272!GO:0000428;DNA-directed RNA polymerase complex;0.00025432851619272!GO:0009108;coenzyme biosynthetic process;0.000266638214955695!GO:0005798;Golgi-associated vesicle;0.000266638214955695!GO:0000059;protein import into nucleus, docking;0.000271262297894505!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000365744312304456!GO:0044431;Golgi apparatus part;0.000369813001179985!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000369920776362793!GO:0032561;guanyl ribonucleotide binding;0.000385476545294583!GO:0019001;guanyl nucleotide binding;0.000385476545294583!GO:0006612;protein targeting to membrane;0.000387373106472059!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000408458820586852!GO:0008250;oligosaccharyl transferase complex;0.000426236131858971!GO:0005684;U2-dependent spliceosome;0.000426236131858971!GO:0008219;cell death;0.000456246436428575!GO:0016265;death;0.000456246436428575!GO:0045941;positive regulation of transcription;0.000478539179845449!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000484967666612909!GO:0015631;tubulin binding;0.000493376902235493!GO:0005876;spindle microtubule;0.000579910934245072!GO:0005770;late endosome;0.000581983659084083!GO:0007088;regulation of mitosis;0.0005856204207183!GO:0051920;peroxiredoxin activity;0.000591373381479884!GO:0006401;RNA catabolic process;0.000593195207178774!GO:0000910;cytokinesis;0.000659717952518928!GO:0046474;glycerophospholipid biosynthetic process;0.000695093388069665!GO:0031124;mRNA 3'-end processing;0.000695093388069665!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000719207584900476!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00072342006350497!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00072342006350497!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00072342006350497!GO:0045893;positive regulation of transcription, DNA-dependent;0.00072342006350497!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000757934479261493!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00076028822611064!GO:0005905;coated pit;0.00076802942536165!GO:0006275;regulation of DNA replication;0.000818032505306868!GO:0006405;RNA export from nucleus;0.000833937258491425!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000839830674329248!GO:0000082;G1/S transition of mitotic cell cycle;0.000859258654838025!GO:0032508;DNA duplex unwinding;0.000867567583129216!GO:0032392;DNA geometric change;0.000867567583129216!GO:0015980;energy derivation by oxidation of organic compounds;0.000902641303297037!GO:0006793;phosphorus metabolic process;0.000921493434443004!GO:0006796;phosphate metabolic process;0.000921493434443004!GO:0000922;spindle pole;0.000923654638719883!GO:0005885;Arp2/3 protein complex;0.000957971490943332!GO:0030867;rough endoplasmic reticulum membrane;0.00114550274716276!GO:0004576;oligosaccharyl transferase activity;0.00114631200009699!GO:0016310;phosphorylation;0.00123405466882356!GO:0006891;intra-Golgi vesicle-mediated transport;0.00123405466882356!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00125355670826884!GO:0005048;signal sequence binding;0.00131437119104548!GO:0004527;exonuclease activity;0.0013585544703974!GO:0051087;chaperone binding;0.00145248083688044!GO:0005637;nuclear inner membrane;0.00153421176924848!GO:0016126;sterol biosynthetic process;0.00154622220731298!GO:0048500;signal recognition particle;0.00156156967114883!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00172805293082505!GO:0015002;heme-copper terminal oxidase activity;0.00172805293082505!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00172805293082505!GO:0004129;cytochrome-c oxidase activity;0.00172805293082505!GO:0051789;response to protein stimulus;0.00184762847808578!GO:0006986;response to unfolded protein;0.00184762847808578!GO:0006916;anti-apoptosis;0.0019453195648158!GO:0003746;translation elongation factor activity;0.00195513689593762!GO:0031123;RNA 3'-end processing;0.00201065334736244!GO:0043624;cellular protein complex disassembly;0.00201845135219113!GO:0009165;nucleotide biosynthetic process;0.00206357547891221!GO:0006289;nucleotide-excision repair;0.00210219561324519!GO:0032200;telomere organization and biogenesis;0.00219851171665679!GO:0000723;telomere maintenance;0.00219851171665679!GO:0031252;leading edge;0.00219887931573055!GO:0006268;DNA unwinding during replication;0.00228724846169313!GO:0030521;androgen receptor signaling pathway;0.0023783529754562!GO:0008312;7S RNA binding;0.00259581222285532!GO:0030176;integral to endoplasmic reticulum membrane;0.00274232595843013!GO:0048471;perinuclear region of cytoplasm;0.00284242914206995!GO:0004003;ATP-dependent DNA helicase activity;0.00288220716640306!GO:0044454;nuclear chromosome part;0.00298481951128341!GO:0000049;tRNA binding;0.00298630148187756!GO:0046489;phosphoinositide biosynthetic process;0.00298630148187756!GO:0006378;mRNA polyadenylation;0.00324261794001521!GO:0003711;transcription elongation regulator activity;0.00324261794001521!GO:0051098;regulation of binding;0.00324261794001521!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00324261794001521!GO:0051252;regulation of RNA metabolic process;0.00325634149395969!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00327005544912663!GO:0018196;peptidyl-asparagine modification;0.00336385475049774!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00336385475049774!GO:0004518;nuclease activity;0.00338089831546029!GO:0048487;beta-tubulin binding;0.00338089831546029!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0033877421885979!GO:0045047;protein targeting to ER;0.0033877421885979!GO:0032259;methylation;0.00345905449958068!GO:0019843;rRNA binding;0.00346438315761596!GO:0006144;purine base metabolic process;0.00351899928635325!GO:0031968;organelle outer membrane;0.00357220093772662!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00367867720080592!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00367867720080592!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00367867720080592!GO:0032984;macromolecular complex disassembly;0.00380638655610226!GO:0008022;protein C-terminus binding;0.00384817245813896!GO:0019867;outer membrane;0.00398619114128655!GO:0016584;nucleosome positioning;0.00399020979347735!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00402039471915199!GO:0015992;proton transport;0.00415170758441585!GO:0005791;rough endoplasmic reticulum;0.00421560452156947!GO:0031072;heat shock protein binding;0.00421560452156947!GO:0006695;cholesterol biosynthetic process;0.00440296161717099!GO:0000790;nuclear chromatin;0.00446162968785474!GO:0006818;hydrogen transport;0.00471766581058543!GO:0040029;regulation of gene expression, epigenetic;0.00478711661741297!GO:0043414;biopolymer methylation;0.00482005528981667!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00508069165560061!GO:0015399;primary active transmembrane transporter activity;0.00508069165560061!GO:0006611;protein export from nucleus;0.00510188848934771!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00564721713673683!GO:0042393;histone binding;0.00590795857073981!GO:0008139;nuclear localization sequence binding;0.00615007420304986!GO:0016787;hydrolase activity;0.00616986999507732!GO:0000725;recombinational repair;0.00618928263008137!GO:0000724;double-strand break repair via homologous recombination;0.00618928263008137!GO:0030663;COPI coated vesicle membrane;0.00620536950332153!GO:0030126;COPI vesicle coat;0.00620536950332153!GO:0005741;mitochondrial outer membrane;0.00635063364266526!GO:0006400;tRNA modification;0.00643380326900965!GO:0031570;DNA integrity checkpoint;0.00658126495077889!GO:0043241;protein complex disassembly;0.00677969909510411!GO:0043069;negative regulation of programmed cell death;0.00692025517597665!GO:0035258;steroid hormone receptor binding;0.00700347054643786!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00702416256807937!GO:0005758;mitochondrial intermembrane space;0.0070473098410288!GO:0000139;Golgi membrane;0.00725460326448864!GO:0000819;sister chromatid segregation;0.00725460326448864!GO:0006284;base-excision repair;0.00730629759171747!GO:0033116;ER-Golgi intermediate compartment membrane;0.00744685709503!GO:0006595;polyamine metabolic process;0.00752799973915554!GO:0008276;protein methyltransferase activity;0.00767012401270517!GO:0042981;regulation of apoptosis;0.00767534130206871!GO:0031988;membrane-bound vesicle;0.0077517854973013!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00794226937748944!GO:0005769;early endosome;0.0079672592164856!GO:0046966;thyroid hormone receptor binding;0.00810691177957762!GO:0043066;negative regulation of apoptosis;0.00817995718077273!GO:0006360;transcription from RNA polymerase I promoter;0.00818076777850136!GO:0046467;membrane lipid biosynthetic process;0.00818215856714392!GO:0000070;mitotic sister chromatid segregation;0.00834820691849775!GO:0005832;chaperonin-containing T-complex;0.00848170562327168!GO:0016272;prefoldin complex;0.00876019319705623!GO:0006091;generation of precursor metabolites and energy;0.00907655308491585!GO:0006220;pyrimidine nucleotide metabolic process;0.00916267046391824!GO:0022890;inorganic cation transmembrane transporter activity;0.00920611037961266!GO:0043488;regulation of mRNA stability;0.00924581534298386!GO:0043487;regulation of RNA stability;0.00924581534298386!GO:0007021;tubulin folding;0.00931024346169251!GO:0043067;regulation of programmed cell death;0.00933980606320112!GO:0000178;exosome (RNase complex);0.00935298501676834!GO:0005669;transcription factor TFIID complex;0.0095609336999173!GO:0000339;RNA cap binding;0.00960786195516805!GO:0031982;vesicle;0.00969275447130248!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00974206723258018!GO:0019899;enzyme binding;0.00981725829059738!GO:0009303;rRNA transcription;0.00996573257729434!GO:0009451;RNA modification;0.0100839663159568!GO:0030137;COPI-coated vesicle;0.0104164090893682!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0106360915098487!GO:0016023;cytoplasmic membrane-bound vesicle;0.0106870268584623!GO:0008017;microtubule binding;0.0107172075650483!GO:0005875;microtubule associated complex;0.0109770847975345!GO:0030518;steroid hormone receptor signaling pathway;0.0112137642815811!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.011384567172477!GO:0022884;macromolecule transmembrane transporter activity;0.0116653912050241!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0116653912050241!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0118269433211406!GO:0031902;late endosome membrane;0.0118668592016642!GO:0030027;lamellipodium;0.0118668592016642!GO:0005720;nuclear heterochromatin;0.0120837830293132!GO:0005869;dynactin complex;0.0121035127470597!GO:0043022;ribosome binding;0.0122068219892888!GO:0008320;protein transmembrane transporter activity;0.0131298427639647!GO:0000781;chromosome, telomeric region;0.013273871071131!GO:0030134;ER to Golgi transport vesicle;0.0133015315918408!GO:0016491;oxidoreductase activity;0.0136177797599508!GO:0000209;protein polyubiquitination;0.0136542548102692!GO:0031410;cytoplasmic vesicle;0.0138906263512743!GO:0009112;nucleobase metabolic process;0.0141649693250749!GO:0043631;RNA polyadenylation;0.0148985856626496!GO:0006607;NLS-bearing substrate import into nucleus;0.0149942783611406!GO:0051539;4 iron, 4 sulfur cluster binding;0.0150587797784926!GO:0043596;nuclear replication fork;0.0154445791811359!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0154782773598012!GO:0000077;DNA damage checkpoint;0.0155841187592679!GO:0016585;chromatin remodeling complex;0.0155884337741132!GO:0000123;histone acetyltransferase complex;0.0156939857602143!GO:0042770;DNA damage response, signal transduction;0.0159620051244939!GO:0008408;3'-5' exonuclease activity;0.016457266459874!GO:0022411;cellular component disassembly;0.0170131603720011!GO:0004532;exoribonuclease activity;0.0174348676616348!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0174348676616348!GO:0031577;spindle checkpoint;0.0174698079012692!GO:0043284;biopolymer biosynthetic process;0.0176005219090683!GO:0000726;non-recombinational repair;0.0177798143285932!GO:0016569;covalent chromatin modification;0.0177896916233544!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0178653835312083!GO:0035267;NuA4 histone acetyltransferase complex;0.0179572543108969!GO:0031970;organelle envelope lumen;0.0181519608370573!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0184942382167458!GO:0043189;H4/H2A histone acetyltransferase complex;0.0191254895950108!GO:0006497;protein amino acid lipidation;0.0191940616327055!GO:0030384;phosphoinositide metabolic process;0.0193179367962159!GO:0051053;negative regulation of DNA metabolic process;0.0194073724743335!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0194088757529364!GO:0042158;lipoprotein biosynthetic process;0.0194451681424785!GO:0016044;membrane organization and biogenesis;0.0194731777968705!GO:0006650;glycerophospholipid metabolic process;0.0198312127531154!GO:0006740;NADPH regeneration;0.0205271976425034!GO:0006098;pentose-phosphate shunt;0.0205271976425034!GO:0006270;DNA replication initiation;0.0205477205994124!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0210815929908158!GO:0010257;NADH dehydrogenase complex assembly;0.0210815929908158!GO:0033108;mitochondrial respiratory chain complex assembly;0.0210815929908158!GO:0000152;nuclear ubiquitin ligase complex;0.0211529187172825!GO:0046982;protein heterodimerization activity;0.0211692103603201!GO:0016407;acetyltransferase activity;0.0213824786828087!GO:0006541;glutamine metabolic process;0.021981930588265!GO:0047485;protein N-terminus binding;0.0222663620108655!GO:0008180;signalosome;0.0226800953105425!GO:0030118;clathrin coat;0.0227445494719371!GO:0065009;regulation of a molecular function;0.0227499305783205!GO:0031625;ubiquitin protein ligase binding;0.0237680082356295!GO:0007004;telomere maintenance via telomerase;0.0240016843297141!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0240283569602394!GO:0005862;muscle thin filament tropomyosin;0.0242229395076362!GO:0030658;transport vesicle membrane;0.0242739020630593!GO:0001832;blastocyst growth;0.024374179914595!GO:0030522;intracellular receptor-mediated signaling pathway;0.0246361303966575!GO:0051287;NAD binding;0.0246838913066413!GO:0042026;protein refolding;0.0257289486273556!GO:0030127;COPII vesicle coat;0.0258983334765052!GO:0012507;ER to Golgi transport vesicle membrane;0.0258983334765052!GO:0044262;cellular carbohydrate metabolic process;0.026266347756062!GO:0051540;metal cluster binding;0.0268539300680959!GO:0051536;iron-sulfur cluster binding;0.0268539300680959!GO:0005773;vacuole;0.0275242630519067!GO:0006007;glucose catabolic process;0.0287465165277192!GO:0042809;vitamin D receptor binding;0.0290961220539706!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0294057744052227!GO:0000096;sulfur amino acid metabolic process;0.029667019469798!GO:0019783;small conjugating protein-specific protease activity;0.0302325113617414!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0302924538917923!GO:0045039;protein import into mitochondrial inner membrane;0.0302924538917923!GO:0005663;DNA replication factor C complex;0.0302924538917923!GO:0031371;ubiquitin conjugating enzyme complex;0.031575055317298!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0317484941834903!GO:0030132;clathrin coat of coated pit;0.0318742953819304!GO:0043130;ubiquitin binding;0.0318742953819304!GO:0032182;small conjugating protein binding;0.0318742953819304!GO:0008538;proteasome activator activity;0.0326921929998248!GO:0042802;identical protein binding;0.0332483934746601!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0334034371554804!GO:0006730;one-carbon compound metabolic process;0.0335049513572272!GO:0005784;translocon complex;0.0338641616681043!GO:0016408;C-acyltransferase activity;0.0339420753470545!GO:0045947;negative regulation of translational initiation;0.0339945151354534!GO:0008536;Ran GTPase binding;0.0340197027364642!GO:0006506;GPI anchor biosynthetic process;0.0344655866513799!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0346574871796332!GO:0007050;cell cycle arrest;0.0349580142630833!GO:0043601;nuclear replisome;0.0354142098430358!GO:0030894;replisome;0.0354142098430358!GO:0004674;protein serine/threonine kinase activity;0.035766754696381!GO:0048522;positive regulation of cellular process;0.0357817828851938!GO:0006376;mRNA splice site selection;0.0358986395522125!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0358986395522125!GO:0003727;single-stranded RNA binding;0.0360470242704408!GO:0004843;ubiquitin-specific protease activity;0.0362370617382601!GO:0048468;cell development;0.0379760694327507!GO:0009124;nucleoside monophosphate biosynthetic process;0.0379818490180359!GO:0009123;nucleoside monophosphate metabolic process;0.0379818490180359!GO:0003756;protein disulfide isomerase activity;0.0387457608988857!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0387457608988857!GO:0008097;5S rRNA binding;0.0389189164019292!GO:0004221;ubiquitin thiolesterase activity;0.0392621239172685!GO:0008361;regulation of cell size;0.0397049528219833!GO:0051128;regulation of cellular component organization and biogenesis;0.0397106780559912!GO:0050178;phenylpyruvate tautomerase activity;0.0397106780559912!GO:0006505;GPI anchor metabolic process;0.0398879413732267!GO:0006301;postreplication repair;0.0398879413732267!GO:0031647;regulation of protein stability;0.0400032838506592!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0401821032969324!GO:0016790;thiolester hydrolase activity;0.0403776417523179!GO:0009116;nucleoside metabolic process;0.0406395559319272!GO:0050662;coenzyme binding;0.0411234531258067!GO:0008415;acyltransferase activity;0.0411752956113721!GO:0006406;mRNA export from nucleus;0.0411752956113721!GO:0004300;enoyl-CoA hydratase activity;0.0414246001478986!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0416967158503083!GO:0007264;small GTPase mediated signal transduction;0.0418919340821216!GO:0004549;tRNA-specific ribonuclease activity;0.0418919340821216!GO:0042054;histone methyltransferase activity;0.0419806601605796!GO:0001824;blastocyst development;0.0420306972538499!GO:0000086;G2/M transition of mitotic cell cycle;0.0420306972538499!GO:0000805;X chromosome;0.0421988671122691!GO:0001740;Barr body;0.0421988671122691!GO:0006278;RNA-dependent DNA replication;0.0442049977037779!GO:0030508;thiol-disulfide exchange intermediate activity;0.0447762391944828!GO:0030911;TPR domain binding;0.0457496238622457!GO:0032039;integrator complex;0.0460243326749203!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0463333436900311!GO:0000793;condensed chromosome;0.0463734950977644!GO:0030496;midbody;0.0472768387679158!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0474075590755345!GO:0005732;small nucleolar ribonucleoprotein complex;0.0480923121592519!GO:0000119;mediator complex;0.0497829062987022
 |sample_id=10441
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=synovium
 |top_motifs=NKX6-1,2:2.56829931178;TFDP1:2.18719851224;FOXQ1:2.11425972561;NKX2-1,4:2.02598149677;FOXD3:1.94954860304;VSX1,2:1.92993048244;ZNF384:1.92503934981;PITX1..3:1.73891318031;PAX4:1.70674749246;TEF:1.67073572241;GFI1:1.66123476461;MZF1:1.65348174879;NFY{A,B,C}:1.62727441557;LEF1_TCF7_TCF7L1,2:1.60898298197;IKZF2:1.59885639915;FOXP1:1.57727678688;RBPJ:1.51003080839;E2F1..5:1.47594438891;PRRX1,2:1.44272882658;GATA4:1.40305221864;BPTF:1.34862105877;AIRE:1.33733092223;POU1F1:1.28198198996;RREB1:1.22869247024;PATZ1:1.14265680027;BREu{core}:1.11336958369;NRF1:1.11016734091;LHX3,4:1.10980970712;CDX1,2,4:1.07493627579;DBP:1.05364138911;ZNF143:1.05061147942;FOXM1:1.00631337608;ZIC1..3:0.984559028876;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.979062692051;SOX{8,9,10}:0.976953708274;TOPORS:0.966220068537;ELK1,4_GABP{A,B1}:0.902555889583;NR6A1:0.886010235888;PAX8:0.866406037683;ADNP_IRX_SIX_ZHX:0.865258286908;NKX2-3_NKX2-5:0.863040448603;ONECUT1,2:0.830041454246;NKX3-2:0.799246933026;AHR_ARNT_ARNT2:0.787264854661;NR5A1,2:0.762400635775;CRX:0.761686481559;POU6F1:0.754789503412;MTE{core}:0.750310517546;MED-1{core}:0.741702059768;SOX17:0.72998543005;CUX2:0.708317807006;HOXA9_MEIS1:0.705527273367;FOX{I1,J2}:0.699992848733;PAX1,9:0.681303871107;RORA:0.632224756549;POU2F1..3:0.630537168208;HIC1:0.617659113934;PDX1:0.615364331153;PBX1:0.604920440378;SOX5:0.602020233918;KLF4:0.584869372192;HMGA1,2:0.575202499141;ATF4:0.570902934703;ARID5B:0.539772192306;OCT4_SOX2{dimer}:0.536576783298;HOX{A4,D4}:0.527928535398;ZBTB16:0.522439346411;STAT5{A,B}:0.510485066929;MYB:0.509115472192;MYBL2:0.501924308162;GTF2A1,2:0.496152488966;CDC5L:0.454153188124;EGR1..3:0.418967113941;HOX{A6,A7,B6,B7}:0.417204825246;FOXA2:0.416398679785;T:0.379263657416;EVI1:0.378978485575;HSF1,2:0.373554837991;FOXN1:0.340380866062;YY1:0.321629220843;GTF2I:0.311620449703;bHLH_family:0.308631662596;SP1:0.297777609254;RFX1:0.297230873004;HBP1_HMGB_SSRP1_UBTF:0.294216461332;GFI1B:0.281339650874;TFAP2B:0.244247635496;TEAD1:0.231047571755;EN1,2:0.219133356211;POU3F1..4:0.184851665642;PAX3,7:0.172130466688;RFX2..5_RFXANK_RFXAP:0.144850028698;HOX{A5,B5}:0.11499517455;FOXP3:0.104535625392;UFEwm:0.0652968955285;MAZ:0.0553825564145;SREBF1,2:0.0230928575;DMAP1_NCOR{1,2}_SMARC:0.00171282458261;ZBTB6:-0.012951613825;HAND1,2:-0.0306332220939;PRDM1:-0.0346735081386;SOX2:-0.0417641567684;PAX6:-0.0616867313056;ZNF238:-0.0731521227598;RXR{A,B,G}:-0.0869543185205;ATF5_CREB3:-0.094255758447;CREB1:-0.0955163702556;ALX1:-0.0991482588148;POU5F1:-0.10935643568;NKX3-1:-0.132858501246;ZFP161:-0.133731625298;HIF1A:-0.140970191378;TFAP4:-0.147142245526;ATF6:-0.156965500582;HNF1A:-0.162407775089;HNF4A_NR2F1,2:-0.182121490017;MTF1:-0.192744805411;TLX2:-0.192866952578;GATA6:-0.197350353843;NR3C1:-0.239216470059;FOX{F1,F2,J1}:-0.248728588758;XBP1:-0.259662477306;PPARG:-0.264541486127;FOXL1:-0.266331552701;NKX2-2,8:-0.281325837879;NANOG{mouse}:-0.282102982909;FOX{D1,D2}:-0.291687838086;EBF1:-0.299134582346;REST:-0.301852265512;NFIX:-0.302622124629;MEF2{A,B,C,D}:-0.321012220482;TAL1_TCF{3,4,12}:-0.340276900608;ALX4:-0.340558768587;TGIF1:-0.353244213428;TFAP2{A,C}:-0.365946009119;JUN:-0.382568778355;PAX5:-0.397480521413;RUNX1..3:-0.402366262547;ELF1,2,4:-0.415479422723;SNAI1..3:-0.432991696601;MYFfamily:-0.452676505749;FOXO1,3,4:-0.463585584707;TP53:-0.481396362839;IKZF1:-0.495157785838;AR:-0.499461432307;SPIB:-0.50359607722;SRF:-0.511124029467;ATF2:-0.512587149738;ZEB1:-0.548770843455;PAX2:-0.559188278582;XCPE1{core}:-0.577970478467;GCM1,2:-0.586719621204;SPI1:-0.597469357522;TLX1..3_NFIC{dimer}:-0.606778053147;NANOG:-0.642119335743;FOS_FOS{B,L1}_JUN{B,D}:-0.643011548523;NFKB1_REL_RELA:-0.668012506409;NR1H4:-0.679945330847;HMX1:-0.685196264423;NFATC1..3:-0.690420552556;HLF:-0.71285348441;FOSL2:-0.790604260234;BACH2:-0.797197364487;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.813785655057;NFE2:-0.833190760155;IRF7:-0.850490749963;TBP:-0.854413941834;GZF1:-0.86322206684;SMAD1..7,9:-0.879850884368;TBX4,5:-0.892328294311;STAT1,3:-0.918392779012;NHLH1,2:-0.921685690789;IRF1,2:-0.932195166521;CEBPA,B_DDIT3:-0.945712162591;NFIL3:-0.99537970283;NFE2L2:-1.00009190109;ETS1,2:-1.00302626234;NFE2L1:-1.02162457024;SPZ1:-1.02418526288;ESR1:-1.02692411659;STAT2,4,6:-1.04613239474;LMO2:-1.05349526046;ZNF423:-1.1232624933;ZNF148:-1.15638273567;HES1:-1.17167876673;EP300:-1.18941096045;TFCP2:-1.3832124261;ESRRA:-1.39150350469;GLI1..3:-1.59581601634;RXRA_VDR{dimer}:-1.76927689603;MAFB:-1.86133708821;MYOD1:-2.00167599748
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10441-106E9;search_select_hide=table117:FF:10441-106E9
 }}

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FF:10441-106E9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:02, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0