FF:11240-116D7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005420 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005420 | ||
|accession_numbers=CAGE;DRX008458;DRR009330;DRZ000755;DRZ002140;DRZ012105;DRZ013490 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037082;DRR041448;DRZ007090 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000723,CL:0000035,CL:0000548,CL:0000680,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188,CL:0000034,CL:0000594 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000165 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor1.CNhs10869.11240-116D7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor1.CNhs10869.11240-116D7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor1.CNhs10869.11240-116D7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor1.CNhs10869.11240-116D7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor1.CNhs10869.11240-116D7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11240-116D7 | |id=FF:11240-116D7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000165 | ||
|is_obsolete= | |||
|library_id=CNhs10869 | |||
|library_id_phase_based=2:CNhs10869 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11240 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GTAGAG.11240 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11240 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GTAGAG.11240 | |||
|name=Skeletal Muscle Satellite Cells, donor1 | |name=Skeletal Muscle Satellite Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10869,LSID703,release008,COMPLETED | |profile_hcage=CNhs10869,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC3515 | |rna_catalog_number=SC3515 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116D7 | |rna_tube_id=116D7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.GTAGAG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.85979992667321e-260!GO:0043226;organelle;2.27737379035109e-204!GO:0043229;intracellular organelle;5.96058772256579e-204!GO:0005737;cytoplasm;4.79847318478989e-198!GO:0043231;intracellular membrane-bound organelle;5.39453965390592e-198!GO:0043227;membrane-bound organelle;8.19282070127409e-198!GO:0044422;organelle part;8.7898163483371e-147!GO:0044446;intracellular organelle part;3.85269563874668e-145!GO:0044444;cytoplasmic part;1.00785196935461e-139!GO:0032991;macromolecular complex;8.2800125843993e-99!GO:0044237;cellular metabolic process;5.54221058736734e-95!GO:0044238;primary metabolic process;1.54254872477132e-94!GO:0030529;ribonucleoprotein complex;4.80901892796177e-90!GO:0043170;macromolecule metabolic process;8.5790449345186e-84!GO:0005634;nucleus;3.0308750927189e-80!GO:0043233;organelle lumen;2.78820558756798e-76!GO:0031974;membrane-enclosed lumen;2.78820558756798e-76!GO:0044428;nuclear part;1.6090198565838e-73!GO:0005739;mitochondrion;9.42044532740794e-72!GO:0003723;RNA binding;1.10312965023773e-71!GO:0005515;protein binding;2.47244089811644e-71!GO:0005840;ribosome;3.28364864276897e-55!GO:0016043;cellular component organization and biogenesis;1.12441578551482e-51!GO:0006412;translation;4.77111383707681e-50!GO:0043234;protein complex;1.71766673911134e-48!GO:0006396;RNA processing;2.68482235505429e-48!GO:0003735;structural constituent of ribosome;4.4885630413538e-48!GO:0031090;organelle membrane;9.21000484887744e-48!GO:0044429;mitochondrial part;2.62864590185637e-47!GO:0019538;protein metabolic process;1.00782557638874e-46!GO:0010467;gene expression;8.80750494790756e-46!GO:0043283;biopolymer metabolic process;1.70437282577694e-45!GO:0033036;macromolecule localization;1.90332232019768e-44!GO:0015031;protein transport;5.7583120998725e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.50947366317495e-43!GO:0009058;biosynthetic process;4.77122271640694e-43!GO:0031981;nuclear lumen;8.45584308366583e-43!GO:0031967;organelle envelope;1.83662264581568e-42!GO:0031975;envelope;5.0416731366846e-42!GO:0044260;cellular macromolecule metabolic process;1.08802667302544e-41!GO:0033279;ribosomal subunit;1.19214090721741e-41!GO:0045184;establishment of protein localization;9.33322039203512e-41!GO:0044267;cellular protein metabolic process;1.23370597204225e-40!GO:0008104;protein localization;1.23633267952798e-40!GO:0044249;cellular biosynthetic process;3.04319744842345e-40!GO:0016071;mRNA metabolic process;4.33960586593049e-40!GO:0005829;cytosol;1.28142831094497e-39!GO:0009059;macromolecule biosynthetic process;2.20102686201466e-37!GO:0008380;RNA splicing;3.82785417831559e-37!GO:0043228;non-membrane-bound organelle;1.63064585201178e-36!GO:0043232;intracellular non-membrane-bound organelle;1.63064585201178e-36!GO:0046907;intracellular transport;2.77492474796101e-36!GO:0006996;organelle organization and biogenesis;9.86630250737856e-35!GO:0006397;mRNA processing;1.13750754031942e-34!GO:0065003;macromolecular complex assembly;4.69402130268817e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.61690471027115e-31!GO:0022607;cellular component assembly;2.90027668082216e-31!GO:0006886;intracellular protein transport;2.76535532298457e-30!GO:0005740;mitochondrial envelope;2.0569695608217e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.32103131399834e-29!GO:0031966;mitochondrial membrane;9.47467803551019e-28!GO:0006259;DNA metabolic process;1.07394971228409e-27!GO:0003676;nucleic acid binding;1.99534081231911e-27!GO:0005654;nucleoplasm;3.70486412294105e-27!GO:0019866;organelle inner membrane;3.94379513870184e-27!GO:0005681;spliceosome;5.55305928621064e-26!GO:0005743;mitochondrial inner membrane;2.2305448594064e-25!GO:0044445;cytosolic part;4.67396577710623e-24!GO:0051649;establishment of cellular localization;4.13668569248369e-23!GO:0051641;cellular localization;4.94181467871962e-23!GO:0000166;nucleotide binding;9.06638791660997e-23!GO:0031980;mitochondrial lumen;3.11794583923026e-22!GO:0005759;mitochondrial matrix;3.11794583923026e-22!GO:0015935;small ribosomal subunit;5.42542716268731e-22!GO:0006119;oxidative phosphorylation;1.59109040911076e-21!GO:0044451;nucleoplasm part;2.19246722730734e-21!GO:0007049;cell cycle;3.81481964666788e-21!GO:0015934;large ribosomal subunit;9.14733377418098e-21!GO:0016070;RNA metabolic process;1.47749910820712e-20!GO:0006457;protein folding;4.09423360307003e-20!GO:0044455;mitochondrial membrane part;5.1335470416988e-20!GO:0012505;endomembrane system;2.3632238878817e-19!GO:0048770;pigment granule;6.81334130380547e-19!GO:0042470;melanosome;6.81334130380547e-19!GO:0022618;protein-RNA complex assembly;1.0336981262284e-18!GO:0005783;endoplasmic reticulum;2.31974632566796e-18!GO:0051186;cofactor metabolic process;4.20831721893192e-18!GO:0016874;ligase activity;4.24157860301993e-18!GO:0006974;response to DNA damage stimulus;1.38842370788472e-17!GO:0005746;mitochondrial respiratory chain;2.0100773829512e-17!GO:0016462;pyrophosphatase activity;2.97669042816262e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.67872290273585e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;5.38744969381839e-17!GO:0008134;transcription factor binding;6.69682792354667e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.71119144343715e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.47062429688715e-17!GO:0006512;ubiquitin cycle;2.05782667963325e-16!GO:0017111;nucleoside-triphosphatase activity;2.30892545159967e-16!GO:0005730;nucleolus;2.42578303847363e-16!GO:0022402;cell cycle process;2.44963422548724e-16!GO:0008135;translation factor activity, nucleic acid binding;3.97787957668992e-16!GO:0044432;endoplasmic reticulum part;4.44756185235469e-16!GO:0000278;mitotic cell cycle;9.34896707522668e-16!GO:0006605;protein targeting;1.07111350570046e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.11726000482438e-15!GO:0043285;biopolymer catabolic process;1.78032822147122e-15!GO:0044265;cellular macromolecule catabolic process;1.78760648083873e-15!GO:0019941;modification-dependent protein catabolic process;2.3424278492596e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.3424278492596e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.50168740778771e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.23966555393848e-15!GO:0003954;NADH dehydrogenase activity;3.23966555393848e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.23966555393848e-15!GO:0005761;mitochondrial ribosome;3.35790304956536e-15!GO:0000313;organellar ribosome;3.35790304956536e-15!GO:0044257;cellular protein catabolic process;3.55003592981675e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.45750290650076e-15!GO:0017076;purine nucleotide binding;4.82287422605989e-15!GO:0000502;proteasome complex (sensu Eukaryota);9.64094573719865e-15!GO:0044248;cellular catabolic process;9.91335033791792e-15!GO:0006732;coenzyme metabolic process;1.27190852336152e-14!GO:0048193;Golgi vesicle transport;1.30668067948342e-14!GO:0032553;ribonucleotide binding;2.44436033742714e-14!GO:0032555;purine ribonucleotide binding;2.44436033742714e-14!GO:0005794;Golgi apparatus;5.37022454048334e-14!GO:0005694;chromosome;6.92696260476695e-14!GO:0009057;macromolecule catabolic process;6.9478913251743e-14!GO:0030163;protein catabolic process;7.6492666037654e-14!GO:0042775;organelle ATP synthesis coupled electron transport;9.05704210798826e-14!GO:0042773;ATP synthesis coupled electron transport;9.05704210798826e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.14546152349973e-13!GO:0005635;nuclear envelope;1.14546152349973e-13!GO:0006281;DNA repair;1.53465693326937e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.21996112935542e-13!GO:0045271;respiratory chain complex I;2.21996112935542e-13!GO:0005747;mitochondrial respiratory chain complex I;2.21996112935542e-13!GO:0016192;vesicle-mediated transport;3.10425046041656e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;3.45009344367042e-13!GO:0000375;RNA splicing, via transesterification reactions;3.45009344367042e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.45009344367042e-13!GO:0051276;chromosome organization and biogenesis;5.65173635510886e-13!GO:0003743;translation initiation factor activity;6.09683675436779e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.18231414312709e-13!GO:0051082;unfolded protein binding;1.15937661808757e-12!GO:0009719;response to endogenous stimulus;1.26625228822909e-12!GO:0044427;chromosomal part;1.30273528813443e-12!GO:0030554;adenyl nucleotide binding;2.03005609773466e-12!GO:0000087;M phase of mitotic cell cycle;3.7183540559938e-12!GO:0006413;translational initiation;3.99556079679734e-12!GO:0005524;ATP binding;4.3688133759972e-12!GO:0016604;nuclear body;5.30433475241663e-12!GO:0007067;mitosis;5.75566859179897e-12!GO:0005793;ER-Golgi intermediate compartment;6.50495835098933e-12!GO:0032559;adenyl ribonucleotide binding;7.53207856488275e-12!GO:0022403;cell cycle phase;8.46062469888919e-12!GO:0009055;electron carrier activity;8.90432001252922e-12!GO:0031965;nuclear membrane;1.43687728617314e-11!GO:0042254;ribosome biogenesis and assembly;1.69811988793061e-11!GO:0006913;nucleocytoplasmic transport;2.17181958356439e-11!GO:0051301;cell division;2.29610946076496e-11!GO:0006446;regulation of translational initiation;4.50027958898606e-11!GO:0051169;nuclear transport;5.19279161202494e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.27388326441099e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;7.01502863828051e-11!GO:0003712;transcription cofactor activity;8.63843987052392e-11!GO:0006163;purine nucleotide metabolic process;9.51494476916875e-11!GO:0005789;endoplasmic reticulum membrane;1.18652114404075e-10!GO:0009259;ribonucleotide metabolic process;1.25198859979039e-10!GO:0006323;DNA packaging;2.65786554272093e-10!GO:0008565;protein transporter activity;3.04122183922229e-10!GO:0009150;purine ribonucleotide metabolic process;3.71920686156787e-10!GO:0043412;biopolymer modification;3.91572381389874e-10!GO:0006260;DNA replication;4.61128136576511e-10!GO:0044453;nuclear membrane part;4.61128136576511e-10!GO:0016491;oxidoreductase activity;6.5605639168326e-10!GO:0006461;protein complex assembly;8.26653529774684e-10!GO:0004386;helicase activity;8.58125621758905e-10!GO:0006164;purine nucleotide biosynthetic process;8.58125621758905e-10!GO:0016607;nuclear speck;9.23785405235798e-10!GO:0009060;aerobic respiration;9.6373609955114e-10!GO:0045333;cellular respiration;9.81662886471309e-10!GO:0000279;M phase;1.4368730629396e-09!GO:0006399;tRNA metabolic process;1.49957693093659e-09!GO:0065004;protein-DNA complex assembly;2.4017428482422e-09!GO:0009260;ribonucleotide biosynthetic process;3.10593875381507e-09!GO:0017038;protein import;3.30669285297947e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.30773122609938e-09!GO:0042623;ATPase activity, coupled;3.37581352618149e-09!GO:0008639;small protein conjugating enzyme activity;4.11900196260432e-09!GO:0016887;ATPase activity;4.39901338652121e-09!GO:0000074;regulation of progression through cell cycle;5.45145845873937e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.20115071639353e-09!GO:0009056;catabolic process;6.82055838010677e-09!GO:0004842;ubiquitin-protein ligase activity;6.91812767526296e-09!GO:0006464;protein modification process;7.97222421901537e-09!GO:0051726;regulation of cell cycle;8.42739468905115e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.60152909682656e-09!GO:0004812;aminoacyl-tRNA ligase activity;9.60152909682656e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.60152909682656e-09!GO:0012501;programmed cell death;1.01642421339942e-08!GO:0051188;cofactor biosynthetic process;1.06337849082822e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.08732281596849e-08!GO:0043038;amino acid activation;1.2041699755026e-08!GO:0006418;tRNA aminoacylation for protein translation;1.2041699755026e-08!GO:0043039;tRNA aminoacylation;1.2041699755026e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.20613715592601e-08!GO:0019787;small conjugating protein ligase activity;1.26936130081271e-08!GO:0006915;apoptosis;1.58167917978217e-08!GO:0065002;intracellular protein transport across a membrane;1.73110432963552e-08!GO:0008026;ATP-dependent helicase activity;1.80583213481623e-08!GO:0006333;chromatin assembly or disassembly;1.98236145467671e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.29794277559013e-08!GO:0015630;microtubule cytoskeleton;2.62400874879305e-08!GO:0006099;tricarboxylic acid cycle;3.05022343566881e-08!GO:0046356;acetyl-CoA catabolic process;3.05022343566881e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.33523083697302e-08!GO:0050657;nucleic acid transport;3.60730742805958e-08!GO:0051236;establishment of RNA localization;3.60730742805958e-08!GO:0050658;RNA transport;3.60730742805958e-08!GO:0050794;regulation of cellular process;3.80680396090653e-08!GO:0005643;nuclear pore;3.85335098132406e-08!GO:0005788;endoplasmic reticulum lumen;3.88704429013111e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.2811641752825e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.2811641752825e-08!GO:0006403;RNA localization;4.47496185346164e-08!GO:0009141;nucleoside triphosphate metabolic process;4.7224989524652e-08!GO:0006366;transcription from RNA polymerase II promoter;5.10374999223501e-08!GO:0048475;coated membrane;5.43104645630435e-08!GO:0030117;membrane coat;5.43104645630435e-08!GO:0008219;cell death;5.43104645630435e-08!GO:0016265;death;5.43104645630435e-08!GO:0043687;post-translational protein modification;5.69092565803808e-08!GO:0030120;vesicle coat;5.97997973540082e-08!GO:0030662;coated vesicle membrane;5.97997973540082e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.97997973540082e-08!GO:0051187;cofactor catabolic process;6.13084984133486e-08!GO:0009109;coenzyme catabolic process;6.85434923932905e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.18088526553261e-08!GO:0006084;acetyl-CoA metabolic process;7.69820230244028e-08!GO:0003697;single-stranded DNA binding;1.04492688918184e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.27340831283569e-07!GO:0043566;structure-specific DNA binding;1.28644932116735e-07!GO:0009117;nucleotide metabolic process;1.37697436881863e-07!GO:0016881;acid-amino acid ligase activity;1.48358151373759e-07!GO:0000785;chromatin;1.61719982733918e-07!GO:0006364;rRNA processing;2.11714794247505e-07!GO:0015986;ATP synthesis coupled proton transport;2.95907706978646e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.95907706978646e-07!GO:0046034;ATP metabolic process;3.55853686799523e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.83139485321401e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.83139485321401e-07!GO:0016853;isomerase activity;3.89231114744145e-07!GO:0009108;coenzyme biosynthetic process;4.49815519046976e-07!GO:0005768;endosome;4.81997041295828e-07!GO:0005813;centrosome;4.86804689208532e-07!GO:0051246;regulation of protein metabolic process;4.87877039731153e-07!GO:0016072;rRNA metabolic process;4.89062283787127e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.91767699726815e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.91767699726815e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.91767699726815e-07!GO:0016859;cis-trans isomerase activity;4.97144003460208e-07!GO:0006091;generation of precursor metabolites and energy;5.59591798411722e-07!GO:0006334;nucleosome assembly;5.86539506501047e-07!GO:0046930;pore complex;6.95299321119791e-07!GO:0051170;nuclear import;7.29837692836073e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.00435536428322e-07!GO:0019829;cation-transporting ATPase activity;8.76538906640567e-07!GO:0048523;negative regulation of cellular process;9.05470662279718e-07!GO:0003924;GTPase activity;1.00159915389578e-06!GO:0005815;microtubule organizing center;1.42419470305383e-06!GO:0051028;mRNA transport;1.55126104941424e-06!GO:0006606;protein import into nucleus;1.81296866917644e-06!GO:0016564;transcription repressor activity;2.02166899619597e-06!GO:0000245;spliceosome assembly;2.06163035551985e-06!GO:0031497;chromatin assembly;2.16534967565663e-06!GO:0032446;protein modification by small protein conjugation;2.1965598504326e-06!GO:0007005;mitochondrion organization and biogenesis;2.3235109818373e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.46396209312935e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.72156469911419e-06!GO:0016567;protein ubiquitination;3.72255582764773e-06!GO:0045259;proton-transporting ATP synthase complex;3.86278663444931e-06!GO:0006754;ATP biosynthetic process;3.92378495097932e-06!GO:0006753;nucleoside phosphate metabolic process;3.92378495097932e-06!GO:0016568;chromatin modification;4.03802825707027e-06!GO:0003714;transcription corepressor activity;5.09926237167557e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.59171442910389e-06!GO:0015980;energy derivation by oxidation of organic compounds;5.61024004436631e-06!GO:0044440;endosomal part;5.6561239135543e-06!GO:0010008;endosome membrane;5.6561239135543e-06!GO:0006613;cotranslational protein targeting to membrane;6.00391112983841e-06!GO:0005798;Golgi-associated vesicle;6.06562217664411e-06!GO:0031252;leading edge;6.46890917651167e-06!GO:0016740;transferase activity;6.46890917651167e-06!GO:0030036;actin cytoskeleton organization and biogenesis;6.64767420659901e-06!GO:0008654;phospholipid biosynthetic process;6.70284041710039e-06!GO:0044431;Golgi apparatus part;8.1638698095793e-06!GO:0007010;cytoskeleton organization and biogenesis;8.23000660173397e-06!GO:0005770;late endosome;8.91534212022814e-06!GO:0031982;vesicle;9.01869505864858e-06!GO:0031988;membrane-bound vesicle;9.01869505864858e-06!GO:0050789;regulation of biological process;1.00244780215308e-05!GO:0006752;group transfer coenzyme metabolic process;1.0181325299875e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.05031755431126e-05!GO:0000151;ubiquitin ligase complex;1.05440524965409e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.12772128277119e-05!GO:0031324;negative regulation of cellular metabolic process;1.15390336463382e-05!GO:0019222;regulation of metabolic process;1.19448264626777e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.21307328694236e-05!GO:0004298;threonine endopeptidase activity;1.26298132932823e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.43685843668069e-05!GO:0031410;cytoplasmic vesicle;1.47275466860415e-05!GO:0005819;spindle;1.57102340083378e-05!GO:0030133;transport vesicle;1.63401196400952e-05!GO:0005667;transcription factor complex;1.77593629239488e-05!GO:0005762;mitochondrial large ribosomal subunit;1.79202658546629e-05!GO:0000315;organellar large ribosomal subunit;1.79202658546629e-05!GO:0016779;nucleotidyltransferase activity;1.95551590574391e-05!GO:0003713;transcription coactivator activity;2.13680169125687e-05!GO:0045786;negative regulation of progression through cell cycle;2.21566253124959e-05!GO:0051427;hormone receptor binding;2.36963692184278e-05!GO:0048519;negative regulation of biological process;2.40127882879272e-05!GO:0030029;actin filament-based process;3.04556598501868e-05!GO:0042981;regulation of apoptosis;3.29474619815308e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.66017493612599e-05!GO:0003724;RNA helicase activity;3.67618355510299e-05!GO:0043021;ribonucleoprotein binding;3.90807216064563e-05!GO:0030867;rough endoplasmic reticulum membrane;3.97274222199758e-05!GO:0043067;regulation of programmed cell death;4.20703271133584e-05!GO:0043623;cellular protein complex assembly;4.24985357578148e-05!GO:0019843;rRNA binding;4.74511294127419e-05!GO:0005525;GTP binding;5.03254989073501e-05!GO:0035257;nuclear hormone receptor binding;5.04521980486401e-05!GO:0016126;sterol biosynthetic process;5.47224101896019e-05!GO:0016563;transcription activator activity;5.60550559482517e-05!GO:0051329;interphase of mitotic cell cycle;5.88750600666855e-05!GO:0045454;cell redox homeostasis;6.01294051264144e-05!GO:0016787;hydrolase activity;6.63114716307822e-05!GO:0009892;negative regulation of metabolic process;6.86202558205345e-05!GO:0000314;organellar small ribosomal subunit;7.01955769659535e-05!GO:0005763;mitochondrial small ribosomal subunit;7.01955769659535e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.04167610657957e-05!GO:0019899;enzyme binding;7.2667935143573e-05!GO:0005048;signal sequence binding;7.85854498682851e-05!GO:0031968;organelle outer membrane;8.25237130636751e-05!GO:0016481;negative regulation of transcription;8.86508100305444e-05!GO:0008610;lipid biosynthetic process;8.96704822415932e-05!GO:0000775;chromosome, pericentric region;9.13107353802167e-05!GO:0019867;outer membrane;9.81383821826598e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000113491232528024!GO:0006261;DNA-dependent DNA replication;0.000146989038229231!GO:0005791;rough endoplasmic reticulum;0.000162050600668089!GO:0006916;anti-apoptosis;0.000164453077538739!GO:0043069;negative regulation of programmed cell death;0.000164631913494974!GO:0050662;coenzyme binding;0.0001717116876264!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000177643183351176!GO:0006612;protein targeting to membrane;0.000180827332155652!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000181068130774647!GO:0005773;vacuole;0.000186168010885944!GO:0043066;negative regulation of apoptosis;0.000186168010885944!GO:0005741;mitochondrial outer membrane;0.000198818114055702!GO:0000139;Golgi membrane;0.000199053640350358!GO:0051325;interphase;0.000225918536200248!GO:0030663;COPI coated vesicle membrane;0.000226283328187167!GO:0030126;COPI vesicle coat;0.000226283328187167!GO:0009165;nucleotide biosynthetic process;0.000239064162314694!GO:0007051;spindle organization and biogenesis;0.000245893086646033!GO:0008092;cytoskeletal protein binding;0.000247974311733212!GO:0005769;early endosome;0.000252347512077024!GO:0016363;nuclear matrix;0.000255022806711434!GO:0003899;DNA-directed RNA polymerase activity;0.000267565393986196!GO:0006793;phosphorus metabolic process;0.000267565393986196!GO:0006796;phosphate metabolic process;0.000267565393986196!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000283585026024848!GO:0003729;mRNA binding;0.000284043837369942!GO:0003690;double-stranded DNA binding;0.000302266147480344!GO:0032561;guanyl ribonucleotide binding;0.000303971148652942!GO:0019001;guanyl nucleotide binding;0.000303971148652942!GO:0046474;glycerophospholipid biosynthetic process;0.000304271278989053!GO:0008250;oligosaccharyl transferase complex;0.000344721437890396!GO:0033116;ER-Golgi intermediate compartment membrane;0.000346448511706308!GO:0005885;Arp2/3 protein complex;0.00034948606064126!GO:0005905;coated pit;0.000369550959975137!GO:0016310;phosphorylation;0.00038404625086607!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000421714671486874!GO:0004576;oligosaccharyl transferase activity;0.000482783100011844!GO:0000075;cell cycle checkpoint;0.0004857909411198!GO:0000323;lytic vacuole;0.000549759894182053!GO:0005764;lysosome;0.000549759894182053!GO:0051168;nuclear export;0.000578117693275813!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000578414824735913!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000594579773034897!GO:0043681;protein import into mitochondrion;0.000699268152065191!GO:0008186;RNA-dependent ATPase activity;0.000720960352338042!GO:0030137;COPI-coated vesicle;0.000720960352338042!GO:0051920;peroxiredoxin activity;0.000737894258498286!GO:0000776;kinetochore;0.00076271387441781!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000798333931392265!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000818532929289296!GO:0006695;cholesterol biosynthetic process;0.000820929535992027!GO:0006891;intra-Golgi vesicle-mediated transport;0.000832739118271841!GO:0051789;response to protein stimulus;0.000885397400144462!GO:0006986;response to unfolded protein;0.000885397400144462!GO:0019752;carboxylic acid metabolic process;0.000943805793589953!GO:0006626;protein targeting to mitochondrion;0.00101500628014029!GO:0006082;organic acid metabolic process;0.00110550781036965!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00110550781036965!GO:0005657;replication fork;0.00114536866047083!GO:0018196;peptidyl-asparagine modification;0.00114705422741659!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00114705422741659!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00114732334978403!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00114732334978403!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00114732334978403!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00118003956072767!GO:0031323;regulation of cellular metabolic process;0.00126631427888315!GO:0048037;cofactor binding;0.0012758238324553!GO:0006414;translational elongation;0.00140622684106341!GO:0046467;membrane lipid biosynthetic process;0.00142633909399545!GO:0006302;double-strand break repair;0.00146821564683408!GO:0051287;NAD binding;0.00146821564683408!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00148053376343429!GO:0000786;nucleosome;0.00153396322577279!GO:0046483;heterocycle metabolic process;0.00158254378080821!GO:0008168;methyltransferase activity;0.00169385423337627!GO:0048500;signal recognition particle;0.00175452054859482!GO:0016741;transferase activity, transferring one-carbon groups;0.00184090913870165!GO:0006310;DNA recombination;0.00187061045545831!GO:0051252;regulation of RNA metabolic process;0.00190902759950433!GO:0006350;transcription;0.00191820899939394!GO:0004004;ATP-dependent RNA helicase activity;0.00196832686234991!GO:0030027;lamellipodium;0.00196832686234991!GO:0016044;membrane organization and biogenesis;0.00199562363858095!GO:0046489;phosphoinositide biosynthetic process;0.00201048513565094!GO:0035258;steroid hormone receptor binding;0.00205812192424284!GO:0008361;regulation of cell size;0.00228316262491267!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00236755661310403!GO:0030521;androgen receptor signaling pathway;0.00242001270678806!GO:0007050;cell cycle arrest;0.00245096135840678!GO:0000059;protein import into nucleus, docking;0.00249111880124073!GO:0030132;clathrin coat of coated pit;0.00272774126840063!GO:0051539;4 iron, 4 sulfur cluster binding;0.00292937093736961!GO:0051540;metal cluster binding;0.00298567579421334!GO:0051536;iron-sulfur cluster binding;0.00298567579421334!GO:0008094;DNA-dependent ATPase activity;0.00298598568813762!GO:0004177;aminopeptidase activity;0.00306408000302717!GO:0008312;7S RNA binding;0.00316605245171138!GO:0009112;nucleobase metabolic process;0.00317427880328582!GO:0051087;chaperone binding;0.00321616833826529!GO:0016049;cell growth;0.00327687094259055!GO:0048471;perinuclear region of cytoplasm;0.0033160852828547!GO:0008139;nuclear localization sequence binding;0.00334217107545352!GO:0043488;regulation of mRNA stability;0.00359454271047318!GO:0043487;regulation of RNA stability;0.00359454271047318!GO:0030118;clathrin coat;0.0037188501234348!GO:0006383;transcription from RNA polymerase III promoter;0.00372803909001785!GO:0008180;signalosome;0.00390543548795238!GO:0003678;DNA helicase activity;0.00390636214471735!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0039741468941271!GO:0045047;protein targeting to ER;0.0039741468941271!GO:0044262;cellular carbohydrate metabolic process;0.0039741468941271!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00406835260875189!GO:0015002;heme-copper terminal oxidase activity;0.00406835260875189!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00406835260875189!GO:0004129;cytochrome-c oxidase activity;0.00406835260875189!GO:0030880;RNA polymerase complex;0.00411188021731131!GO:0051128;regulation of cellular component organization and biogenesis;0.00425542797504175!GO:0030658;transport vesicle membrane;0.00429518335252735!GO:0016408;C-acyltransferase activity;0.00432449368194009!GO:0006118;electron transport;0.00439796629599285!GO:0030041;actin filament polymerization;0.00441748254570692!GO:0042802;identical protein binding;0.00441873717310964!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00441873717310964!GO:0006650;glycerophospholipid metabolic process;0.00443876399344824!GO:0006289;nucleotide-excision repair;0.0045034663948059!GO:0006352;transcription initiation;0.00453070522647168!GO:0032984;macromolecular complex disassembly;0.00487677260081512!GO:0030134;ER to Golgi transport vesicle;0.00499573016664996!GO:0015631;tubulin binding;0.00501334354955765!GO:0031072;heat shock protein binding;0.00531297172020253!GO:0006402;mRNA catabolic process;0.00540159334333888!GO:0007052;mitotic spindle organization and biogenesis;0.00547235152351118!GO:0051101;regulation of DNA binding;0.00550307242859055!GO:0051052;regulation of DNA metabolic process;0.00568264596620932!GO:0005874;microtubule;0.00570079636819179!GO:0000049;tRNA binding;0.00571103844532318!GO:0031902;late endosome membrane;0.00575110216614199!GO:0010468;regulation of gene expression;0.00584906952499596!GO:0007093;mitotic cell cycle checkpoint;0.00585283747186165!GO:0016251;general RNA polymerase II transcription factor activity;0.00594391797665102!GO:0003684;damaged DNA binding;0.00594391797665102!GO:0007006;mitochondrial membrane organization and biogenesis;0.00604682950558476!GO:0006839;mitochondrial transport;0.00604682950558476!GO:0001726;ruffle;0.00611620547700174!GO:0065007;biological regulation;0.00614523651114991!GO:0030176;integral to endoplasmic reticulum membrane;0.00630981371438897!GO:0000096;sulfur amino acid metabolic process;0.00634237760200583!GO:0003682;chromatin binding;0.0063608209855113!GO:0045892;negative regulation of transcription, DNA-dependent;0.00641926094007232!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0066341807237271!GO:0005684;U2-dependent spliceosome;0.0066341807237271!GO:0001558;regulation of cell growth;0.0066341807237271!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0066341807237271!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0066341807237271!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00666135455074516!GO:0005869;dynactin complex;0.006891709511668!GO:0016197;endosome transport;0.00694921323748138!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00706842221922146!GO:0008154;actin polymerization and/or depolymerization;0.00722279084940239!GO:0003711;transcription elongation regulator activity;0.00726741333352868!GO:0006740;NADPH regeneration;0.00732282727074518!GO:0006098;pentose-phosphate shunt;0.00732282727074518!GO:0008033;tRNA processing;0.0073723694534616!GO:0003746;translation elongation factor activity;0.00745853854489541!GO:0048522;positive regulation of cellular process;0.00804030488003553!GO:0030127;COPII vesicle coat;0.00805376053640064!GO:0012507;ER to Golgi transport vesicle membrane;0.00805376053640064!GO:0017166;vinculin binding;0.00845316952862138!GO:0007243;protein kinase cascade;0.00850416677395246!GO:0006733;oxidoreduction coenzyme metabolic process;0.00851247094953761!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00853194052470838!GO:0000428;DNA-directed RNA polymerase complex;0.00853194052470838!GO:0008652;amino acid biosynthetic process;0.00856129207041767!GO:0009116;nucleoside metabolic process;0.00856410579972492!GO:0031124;mRNA 3'-end processing;0.00856410579972492!GO:0050681;androgen receptor binding;0.0085889073043369!GO:0006979;response to oxidative stress;0.00864895434126874!GO:0043284;biopolymer biosynthetic process;0.00880449219850711!GO:0006769;nicotinamide metabolic process;0.00892420008262532!GO:0009081;branched chain family amino acid metabolic process;0.00895766726318111!GO:0031625;ubiquitin protein ligase binding;0.00920221290147979!GO:0016584;nucleosome positioning;0.00932804273365437!GO:0006520;amino acid metabolic process;0.0093899403375363!GO:0044452;nucleolar part;0.00951892462476778!GO:0043241;protein complex disassembly;0.00968456158768664!GO:0000910;cytokinesis;0.00971508599839751!GO:0000339;RNA cap binding;0.00975047943252366!GO:0043022;ribosome binding;0.0103271416365891!GO:0005637;nuclear inner membrane;0.0104931999833201!GO:0030384;phosphoinositide metabolic process;0.0106108239466196!GO:0000209;protein polyubiquitination;0.0107179229835137!GO:0006595;polyamine metabolic process;0.0107587737381222!GO:0030518;steroid hormone receptor signaling pathway;0.0113899582868688!GO:0048487;beta-tubulin binding;0.0113899582868688!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0114468871882014!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0114591135516058!GO:0008629;induction of apoptosis by intracellular signals;0.0121190936961811!GO:0006892;post-Golgi vesicle-mediated transport;0.012165076629154!GO:0005876;spindle microtubule;0.0122202248205861!GO:0030660;Golgi-associated vesicle membrane;0.0122202248205861!GO:0006509;membrane protein ectodomain proteolysis;0.0122520247956898!GO:0033619;membrane protein proteolysis;0.0122520247956898!GO:0006405;RNA export from nucleus;0.0122837977409163!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0123230137786942!GO:0006950;response to stress;0.0126051837728842!GO:0045045;secretory pathway;0.0126619576057702!GO:0007088;regulation of mitosis;0.0127312552916243!GO:0005832;chaperonin-containing T-complex;0.0128998310821569!GO:0006607;NLS-bearing substrate import into nucleus;0.0129653319344516!GO:0007264;small GTPase mediated signal transduction;0.0136730667923498!GO:0016407;acetyltransferase activity;0.0137277334993988!GO:0004674;protein serine/threonine kinase activity;0.0137520658870765!GO:0031970;organelle envelope lumen;0.0143017244165938!GO:0042770;DNA damage response, signal transduction;0.0143942743207349!GO:0045893;positive regulation of transcription, DNA-dependent;0.0145724491937307!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0149098454335498!GO:0043624;cellular protein complex disassembly;0.0152819572016489!GO:0016272;prefoldin complex;0.0160767523719171!GO:0006401;RNA catabolic process;0.0160972298810879!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0165731582792453!GO:0033043;regulation of organelle organization and biogenesis;0.0165731582792453!GO:0065009;regulation of a molecular function;0.0166465038078941!GO:0004527;exonuclease activity;0.0167506242248264!GO:0016125;sterol metabolic process;0.0169119958350189!GO:0007059;chromosome segregation;0.0170297031239906!GO:0005862;muscle thin filament tropomyosin;0.0170427342109064!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.017249804621822!GO:0042158;lipoprotein biosynthetic process;0.018748000387116!GO:0022890;inorganic cation transmembrane transporter activity;0.0187968334488903!GO:0005669;transcription factor TFIID complex;0.019035366502923!GO:0009303;rRNA transcription;0.0190429259947036!GO:0046914;transition metal ion binding;0.0192826307908437!GO:0006505;GPI anchor metabolic process;0.0193350728576896!GO:0005586;collagen type III;0.0194046999548545!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0194389747779055!GO:0030145;manganese ion binding;0.0194647634181956!GO:0006338;chromatin remodeling;0.0195510161786815!GO:0016860;intramolecular oxidoreductase activity;0.0196055380282001!GO:0006506;GPI anchor biosynthetic process;0.0206410093527868!GO:0006220;pyrimidine nucleotide metabolic process;0.0208120906956287!GO:0007021;tubulin folding;0.0208455916830459!GO:0006739;NADP metabolic process;0.0209713278782826!GO:0006497;protein amino acid lipidation;0.0211337727333812!GO:0006144;purine base metabolic process;0.0213050727602342!GO:0030119;AP-type membrane coat adaptor complex;0.0213929684913343!GO:0006376;mRNA splice site selection;0.0214274745754603!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0214274745754603!GO:0006778;porphyrin metabolic process;0.0214274745754603!GO:0033013;tetrapyrrole metabolic process;0.0214274745754603!GO:0006790;sulfur metabolic process;0.0214757205678409!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0219018873064336!GO:0031901;early endosome membrane;0.0222202866327462!GO:0003756;protein disulfide isomerase activity;0.0225170904569595!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0225170904569595!GO:0008047;enzyme activator activity;0.0225793505308617!GO:0005758;mitochondrial intermembrane space;0.0226324348722043!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0227479744463897!GO:0008234;cysteine-type peptidase activity;0.0227999695054735!GO:0000097;sulfur amino acid biosynthetic process;0.0228128668128049!GO:0003779;actin binding;0.0238524088975565!GO:0000082;G1/S transition of mitotic cell cycle;0.0238524088975565!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0239165855441447!GO:0015399;primary active transmembrane transporter activity;0.0239165855441447!GO:0008097;5S rRNA binding;0.0240630078369074!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0244005481791047!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0244767008667996!GO:0047485;protein N-terminus binding;0.0248591648356052!GO:0030125;clathrin vesicle coat;0.0251094236251432!GO:0030665;clathrin coated vesicle membrane;0.0251094236251432!GO:0031123;RNA 3'-end processing;0.0252162442560058!GO:0006720;isoprenoid metabolic process;0.0253127631901452!GO:0004300;enoyl-CoA hydratase activity;0.0254067064432023!GO:0000792;heterochromatin;0.0254623848200094!GO:0019362;pyridine nucleotide metabolic process;0.0259293703008036!GO:0001872;zymosan binding;0.0259293703008036!GO:0001878;response to yeast;0.0259293703008036!GO:0032200;telomere organization and biogenesis;0.0259293703008036!GO:0000723;telomere maintenance;0.0259293703008036!GO:0031529;ruffle organization and biogenesis;0.0260962413198381!GO:0009124;nucleoside monophosphate biosynthetic process;0.0264081887159927!GO:0009123;nucleoside monophosphate metabolic process;0.0264081887159927!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0273068687689832!GO:0008022;protein C-terminus binding;0.0274968413446617!GO:0045941;positive regulation of transcription;0.0278222468758761!GO:0015036;disulfide oxidoreductase activity;0.0278448906636441!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.028132604236123!GO:0006767;water-soluble vitamin metabolic process;0.0284317617418286!GO:0006378;mRNA polyadenylation;0.0284916202669489!GO:0030865;cortical cytoskeleton organization and biogenesis;0.028532106078561!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0290661620859065!GO:0004003;ATP-dependent DNA helicase activity;0.0299822461270348!GO:0051098;regulation of binding;0.0300966571376632!GO:0032508;DNA duplex unwinding;0.0306211513761603!GO:0032392;DNA geometric change;0.0306211513761603!GO:0005096;GTPase activator activity;0.0308839645681094!GO:0030032;lamellipodium biogenesis;0.0310218462150334!GO:0007004;telomere maintenance via telomerase;0.0315146497698272!GO:0017134;fibroblast growth factor binding;0.0315892319657415!GO:0043130;ubiquitin binding;0.0315892319657415!GO:0032182;small conjugating protein binding;0.0315892319657415!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0316208450436505!GO:0032774;RNA biosynthetic process;0.0321542856759909!GO:0031406;carboxylic acid binding;0.0327293645918837!GO:0000922;spindle pole;0.0345793981255917!GO:0030508;thiol-disulfide exchange intermediate activity;0.0351041174490022!GO:0050811;GABA receptor binding;0.0354050151266326!GO:0006275;regulation of DNA replication;0.0354050151266326!GO:0006611;protein export from nucleus;0.0362960053315953!GO:0035035;histone acetyltransferase binding;0.0362960053315953!GO:0007040;lysosome organization and biogenesis;0.0363530444237681!GO:0005583;fibrillar collagen;0.0364719385874182!GO:0005784;translocon complex;0.0370571066199492!GO:0005774;vacuolar membrane;0.0371880710790755!GO:0030131;clathrin adaptor complex;0.0371880710790755!GO:0008632;apoptotic program;0.0372561784590614!GO:0006541;glutamine metabolic process;0.0372947198880484!GO:0006351;transcription, DNA-dependent;0.0372947198880484!GO:0005100;Rho GTPase activator activity;0.0373021159508144!GO:0015992;proton transport;0.0374474047058794!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0375832772532579!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0375935043882412!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0375935043882412!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0384754983688038!GO:0008299;isoprenoid biosynthetic process;0.0393484058291253!GO:0004563;beta-N-acetylhexosaminidase activity;0.0393484058291253!GO:0009161;ribonucleoside monophosphate metabolic process;0.039622674605703!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.039622674605703!GO:0050750;low-density lipoprotein receptor binding;0.0396247536756136!GO:0006897;endocytosis;0.0401847676453692!GO:0010324;membrane invagination;0.0401847676453692!GO:0006779;porphyrin biosynthetic process;0.0402908881533293!GO:0033014;tetrapyrrole biosynthetic process;0.0402908881533293!GO:0005099;Ras GTPase activator activity;0.0406900987679964!GO:0033559;unsaturated fatty acid metabolic process;0.0406900987679964!GO:0006636;unsaturated fatty acid biosynthetic process;0.0406900987679964!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0414701284956109!GO:0019798;procollagen-proline dioxygenase activity;0.0414701284956109!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0414701284956109!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0414701284956109!GO:0009126;purine nucleoside monophosphate metabolic process;0.0414701284956109!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0414701284956109!GO:0006007;glucose catabolic process;0.0418241209697363!GO:0022411;cellular component disassembly;0.0418909492757087!GO:0043065;positive regulation of apoptosis;0.042029363369071!GO:0006818;hydrogen transport;0.0424832163352294!GO:0030833;regulation of actin filament polymerization;0.0425204922897948!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0425208257999549!GO:0044255;cellular lipid metabolic process;0.0427291142391789!GO:0005801;cis-Golgi network;0.0430975309409972!GO:0031371;ubiquitin conjugating enzyme complex;0.0437584200704935!GO:0046966;thyroid hormone receptor binding;0.0437594796881754!GO:0007569;cell aging;0.04394856353502!GO:0006268;DNA unwinding during replication;0.0439973329163275!GO:0030522;intracellular receptor-mediated signaling pathway;0.0446702034047909!GO:0008320;protein transmembrane transporter activity;0.0448337485454757!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0452964852806006!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0452964852806006!GO:0031418;L-ascorbic acid binding;0.0455069955495722!GO:0022415;viral reproductive process;0.0466099947107673!GO:0031543;peptidyl-proline dioxygenase activity;0.0473388177343052!GO:0006417;regulation of translation;0.0475757357676993!GO:0016453;C-acetyltransferase activity;0.0476319254821971!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0478256921731773!GO:0010257;NADH dehydrogenase complex assembly;0.0478256921731773!GO:0033108;mitochondrial respiratory chain complex assembly;0.0478256921731773!GO:0043068;positive regulation of programmed cell death;0.0486832887927959!GO:0003923;GPI-anchor transamidase activity;0.0486832887927959!GO:0016255;attachment of GPI anchor to protein;0.0486832887927959!GO:0042765;GPI-anchor transamidase complex;0.0486832887927959!GO:0031570;DNA integrity checkpoint;0.0486832887927959!GO:0007017;microtubule-based process;0.0486832887927959!GO:0004448;isocitrate dehydrogenase activity;0.0488136259796638!GO:0042168;heme metabolic process;0.0488466346525957!GO:0007033;vacuole organization and biogenesis;0.0488897459616243!GO:0004518;nuclease activity;0.0491568404610583 | |||
|sample_id=11240 | |sample_id=11240 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=ZNF238:1.56269734433;NKX3-1:1.55161660159;GFI1B:1.40608384947;PAX4:1.40495009276;EN1,2:1.37920164048;NANOG{mouse}:1.35726557604;NKX2-1,4:1.31675007302;MYBL2:1.28628450465;TFAP4:1.24095716411;GZF1:1.18858581661;YY1:1.18281306976;CDX1,2,4:1.15036029085;TAL1_TCF{3,4,12}:1.09522376666;STAT1,3:1.04512355152;EVI1:1.03454271708;RXR{A,B,G}:1.01525684343;FOXD3:0.966931289187;NKX2-2,8:0.9660757942;MZF1:0.950727596486;GFI1:0.902206278168;CDC5L:0.868763941819;SPZ1:0.828435179152;FOXP1:0.788135924875;POU3F1..4:0.785846383852;DBP:0.782149537655;NR3C1:0.752007208663;SOX17:0.732945819371;IKZF1:0.71335127188;PAX5:0.698901527229;KLF4:0.695485295332;ALX4:0.688989629135;ATF6:0.68767704729;GTF2I:0.68712658312;NFIX:0.68453410788;UFEwm:0.679953810563;PDX1:0.679677697868;AIRE:0.673891125026;TLX1..3_NFIC{dimer}:0.66371902435;TOPORS:0.657006676885;TEAD1:0.653656771892;NFATC1..3:0.60399793881;ZNF143:0.59353059994;HOX{A4,D4}:0.583923510417;EBF1:0.578061158788;ZBTB16:0.564657443424;PAX1,9:0.546076732235;GTF2A1,2:0.534081987259;NKX6-1,2:0.532337712196;HOX{A5,B5}:0.526885674802;TEF:0.516756943963;LHX3,4:0.502102256638;SRF:0.493257549315;NRF1:0.473211014561;DMAP1_NCOR{1,2}_SMARC:0.463225172472;NR1H4:0.447156992786;STAT5{A,B}:0.408771124183;GLI1..3:0.408476392101;NFY{A,B,C}:0.400474940548;HSF1,2:0.398905117727;POU1F1:0.378222099879;TP53:0.370937039836;ELK1,4_GABP{A,B1}:0.352873962035;STAT2,4,6:0.34884622947;NKX3-2:0.348632590843;FOXP3:0.329716320908;HIF1A:0.31661555709;PATZ1:0.307677828989;HMGA1,2:0.307516402814;CEBPA,B_DDIT3:0.306318728255;MAZ:0.304256168428;PRDM1:0.298716401117;PRRX1,2:0.282463360463;TBX4,5:0.280624225755;E2F1..5:0.269981994212;MYFfamily:0.26455854441;XBP1:0.259970073752;NKX2-3_NKX2-5:0.248352149176;MYB:0.224343132085;AR:0.22150414377;NHLH1,2:0.172524158894;PITX1..3:0.164216537853;BPTF:0.160232507951;FOXO1,3,4:0.158455326812;PBX1:0.111940819696;RBPJ:0.108752775102;TFAP2{A,C}:0.0707998404638;RREB1:0.0556048095745;TFDP1:0.0544194167157;GATA4:0.0518655153296;ZNF384:0.0422265511014;HBP1_HMGB_SSRP1_UBTF:0.0359550837408;RFX1:0.0314117268659;HNF4A_NR2F1,2:0.0276520472719;ZFP161:0.0187868852747;MAFB:0.0176947778102;HNF1A:0.0117409534617;BACH2:0.00993461174299;AHR_ARNT_ARNT2:-0.00716636910471;HLF:-0.0072961556309;ZIC1..3:-0.00979204051065;HOX{A6,A7,B6,B7}:-0.0176671019502;ELF1,2,4:-0.0348779389192;PPARG:-0.0354334852817;ONECUT1,2:-0.0497567731493;CUX2:-0.0603304721997;RXRA_VDR{dimer}:-0.0651657279927;TFCP2:-0.072532987942;SREBF1,2:-0.0816697787849;SP1:-0.0829684924131;NFE2L2:-0.106982108653;ESR1:-0.119677308388;FOXL1:-0.126078712084;SOX5:-0.127675530261;EGR1..3:-0.12885160566;HIC1:-0.139264388591;ADNP_IRX_SIX_ZHX:-0.144290802645;ALX1:-0.144580852179;NR6A1:-0.145923097051;IRF1,2:-0.161222258315;XCPE1{core}:-0.168450515165;ZBTB6:-0.182958396083;ZNF148:-0.184674049756;TGIF1:-0.197341906349;FOX{D1,D2}:-0.197784034154;NFE2:-0.199348934917;TLX2:-0.203153748966;FOXA2:-0.204401612793;FOS_FOS{B,L1}_JUN{B,D}:-0.222023708377;CREB1:-0.224150984647;MTF1:-0.225643241977;ZNF423:-0.235231848129;TBP:-0.23648320897;RUNX1..3:-0.24293509411;MEF2{A,B,C,D}:-0.253795072342;GCM1,2:-0.264506450254;MTE{core}:-0.276272558915;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.278537875488;SOX2:-0.285646299385;MED-1{core}:-0.291581856006;T:-0.299796404288;FOSL2:-0.30436917082;PAX3,7:-0.31492228175;IRF7:-0.329238054256;BREu{core}:-0.341822990327;NFE2L1:-0.342087474163;POU2F1..3:-0.36014039923;FOXM1:-0.365252512398;SMAD1..7,9:-0.369038328568;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.376053114869;ARID5B:-0.399087526473;FOXN1:-0.399559633509;NFKB1_REL_RELA:-0.400650075198;ATF4:-0.410292260061;NANOG:-0.44204221919;POU6F1:-0.448611583551;RFX2..5_RFXANK_RFXAP:-0.449761415833;ATF2:-0.463220897057;IKZF2:-0.464860064387;PAX6:-0.467172930003;HAND1,2:-0.470115387372;POU5F1:-0.488175223369;SPI1:-0.488615299017;ETS1,2:-0.491506822016;RORA:-0.499271442886;bHLH_family:-0.508152902655;ESRRA:-0.514383692767;LEF1_TCF7_TCF7L1,2:-0.518771955447;HES1:-0.531299936095;PAX8:-0.554156083964;JUN:-0.560915387215;TFAP2B:-0.564254855072;REST:-0.576631667291;SPIB:-0.58324576022;CRX:-0.60151968924;LMO2:-0.608024110695;PAX2:-0.609861882157;OCT4_SOX2{dimer}:-0.625512680726;ATF5_CREB3:-0.712788869849;EP300:-0.716682220817;GATA6:-0.720138563162;SOX{8,9,10}:-0.741880689397;HOXA9_MEIS1:-0.789778141662;NR5A1,2:-0.827628674601;FOXQ1:-0.829134143471;VSX1,2:-0.883538259228;HMX1:-0.974419060674;SNAI1..3:-0.994438760396;NFIL3:-1.00364714632;FOX{F1,F2,J1}:-1.03586039777;FOX{I1,J2}:-1.1307709559;ZEB1:-1.16953651021;MYOD1:-1.7208155553 | |top_motifs=ZNF238:1.56269734433;NKX3-1:1.55161660159;GFI1B:1.40608384947;PAX4:1.40495009276;EN1,2:1.37920164048;NANOG{mouse}:1.35726557604;NKX2-1,4:1.31675007302;MYBL2:1.28628450465;TFAP4:1.24095716411;GZF1:1.18858581661;YY1:1.18281306976;CDX1,2,4:1.15036029085;TAL1_TCF{3,4,12}:1.09522376666;STAT1,3:1.04512355152;EVI1:1.03454271708;RXR{A,B,G}:1.01525684343;FOXD3:0.966931289187;NKX2-2,8:0.9660757942;MZF1:0.950727596486;GFI1:0.902206278168;CDC5L:0.868763941819;SPZ1:0.828435179152;FOXP1:0.788135924875;POU3F1..4:0.785846383852;DBP:0.782149537655;NR3C1:0.752007208663;SOX17:0.732945819371;IKZF1:0.71335127188;PAX5:0.698901527229;KLF4:0.695485295332;ALX4:0.688989629135;ATF6:0.68767704729;GTF2I:0.68712658312;NFIX:0.68453410788;UFEwm:0.679953810563;PDX1:0.679677697868;AIRE:0.673891125026;TLX1..3_NFIC{dimer}:0.66371902435;TOPORS:0.657006676885;TEAD1:0.653656771892;NFATC1..3:0.60399793881;ZNF143:0.59353059994;HOX{A4,D4}:0.583923510417;EBF1:0.578061158788;ZBTB16:0.564657443424;PAX1,9:0.546076732235;GTF2A1,2:0.534081987259;NKX6-1,2:0.532337712196;HOX{A5,B5}:0.526885674802;TEF:0.516756943963;LHX3,4:0.502102256638;SRF:0.493257549315;NRF1:0.473211014561;DMAP1_NCOR{1,2}_SMARC:0.463225172472;NR1H4:0.447156992786;STAT5{A,B}:0.408771124183;GLI1..3:0.408476392101;NFY{A,B,C}:0.400474940548;HSF1,2:0.398905117727;POU1F1:0.378222099879;TP53:0.370937039836;ELK1,4_GABP{A,B1}:0.352873962035;STAT2,4,6:0.34884622947;NKX3-2:0.348632590843;FOXP3:0.329716320908;HIF1A:0.31661555709;PATZ1:0.307677828989;HMGA1,2:0.307516402814;CEBPA,B_DDIT3:0.306318728255;MAZ:0.304256168428;PRDM1:0.298716401117;PRRX1,2:0.282463360463;TBX4,5:0.280624225755;E2F1..5:0.269981994212;MYFfamily:0.26455854441;XBP1:0.259970073752;NKX2-3_NKX2-5:0.248352149176;MYB:0.224343132085;AR:0.22150414377;NHLH1,2:0.172524158894;PITX1..3:0.164216537853;BPTF:0.160232507951;FOXO1,3,4:0.158455326812;PBX1:0.111940819696;RBPJ:0.108752775102;TFAP2{A,C}:0.0707998404638;RREB1:0.0556048095745;TFDP1:0.0544194167157;GATA4:0.0518655153296;ZNF384:0.0422265511014;HBP1_HMGB_SSRP1_UBTF:0.0359550837408;RFX1:0.0314117268659;HNF4A_NR2F1,2:0.0276520472719;ZFP161:0.0187868852747;MAFB:0.0176947778102;HNF1A:0.0117409534617;BACH2:0.00993461174299;AHR_ARNT_ARNT2:-0.00716636910471;HLF:-0.0072961556309;ZIC1..3:-0.00979204051065;HOX{A6,A7,B6,B7}:-0.0176671019502;ELF1,2,4:-0.0348779389192;PPARG:-0.0354334852817;ONECUT1,2:-0.0497567731493;CUX2:-0.0603304721997;RXRA_VDR{dimer}:-0.0651657279927;TFCP2:-0.072532987942;SREBF1,2:-0.0816697787849;SP1:-0.0829684924131;NFE2L2:-0.106982108653;ESR1:-0.119677308388;FOXL1:-0.126078712084;SOX5:-0.127675530261;EGR1..3:-0.12885160566;HIC1:-0.139264388591;ADNP_IRX_SIX_ZHX:-0.144290802645;ALX1:-0.144580852179;NR6A1:-0.145923097051;IRF1,2:-0.161222258315;XCPE1{core}:-0.168450515165;ZBTB6:-0.182958396083;ZNF148:-0.184674049756;TGIF1:-0.197341906349;FOX{D1,D2}:-0.197784034154;NFE2:-0.199348934917;TLX2:-0.203153748966;FOXA2:-0.204401612793;FOS_FOS{B,L1}_JUN{B,D}:-0.222023708377;CREB1:-0.224150984647;MTF1:-0.225643241977;ZNF423:-0.235231848129;TBP:-0.23648320897;RUNX1..3:-0.24293509411;MEF2{A,B,C,D}:-0.253795072342;GCM1,2:-0.264506450254;MTE{core}:-0.276272558915;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.278537875488;SOX2:-0.285646299385;MED-1{core}:-0.291581856006;T:-0.299796404288;FOSL2:-0.30436917082;PAX3,7:-0.31492228175;IRF7:-0.329238054256;BREu{core}:-0.341822990327;NFE2L1:-0.342087474163;POU2F1..3:-0.36014039923;FOXM1:-0.365252512398;SMAD1..7,9:-0.369038328568;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.376053114869;ARID5B:-0.399087526473;FOXN1:-0.399559633509;NFKB1_REL_RELA:-0.400650075198;ATF4:-0.410292260061;NANOG:-0.44204221919;POU6F1:-0.448611583551;RFX2..5_RFXANK_RFXAP:-0.449761415833;ATF2:-0.463220897057;IKZF2:-0.464860064387;PAX6:-0.467172930003;HAND1,2:-0.470115387372;POU5F1:-0.488175223369;SPI1:-0.488615299017;ETS1,2:-0.491506822016;RORA:-0.499271442886;bHLH_family:-0.508152902655;ESRRA:-0.514383692767;LEF1_TCF7_TCF7L1,2:-0.518771955447;HES1:-0.531299936095;PAX8:-0.554156083964;JUN:-0.560915387215;TFAP2B:-0.564254855072;REST:-0.576631667291;SPIB:-0.58324576022;CRX:-0.60151968924;LMO2:-0.608024110695;PAX2:-0.609861882157;OCT4_SOX2{dimer}:-0.625512680726;ATF5_CREB3:-0.712788869849;EP300:-0.716682220817;GATA6:-0.720138563162;SOX{8,9,10}:-0.741880689397;HOXA9_MEIS1:-0.789778141662;NR5A1,2:-0.827628674601;FOXQ1:-0.829134143471;VSX1,2:-0.883538259228;HMX1:-0.974419060674;SNAI1..3:-0.994438760396;NFIL3:-1.00364714632;FOX{F1,F2,J1}:-1.03586039777;FOX{I1,J2}:-1.1307709559;ZEB1:-1.16953651021;MYOD1:-1.7208155553 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11240-116D7;search_select_hide=table117:FF:11240-116D7 | |||
}} | }} | ||
Latest revision as of 16:27, 3 June 2020
| Name: | Skeletal Muscle Satellite Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10869 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10869
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10869
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.768 |
| 10 | 10 | 0.314 |
| 100 | 100 | 0.963 |
| 101 | 101 | 0.834 |
| 102 | 102 | 0.0758 |
| 103 | 103 | 0.552 |
| 104 | 104 | 0.867 |
| 105 | 105 | 0.604 |
| 106 | 106 | 1.26717e-4 |
| 107 | 107 | 0.449 |
| 108 | 108 | 0.224 |
| 109 | 109 | 0.254 |
| 11 | 11 | 0.776 |
| 110 | 110 | 0.137 |
| 111 | 111 | 0.27 |
| 112 | 112 | 0.0668 |
| 113 | 113 | 0.00645 |
| 114 | 114 | 0.1 |
| 115 | 115 | 0.125 |
| 116 | 116 | 0.429 |
| 117 | 117 | 0.377 |
| 118 | 118 | 0.583 |
| 119 | 119 | 0.368 |
| 12 | 12 | 0.282 |
| 120 | 120 | 0.927 |
| 121 | 121 | 0.934 |
| 122 | 122 | 0.00113 |
| 123 | 123 | 0.135 |
| 124 | 124 | 0.364 |
| 125 | 125 | 0.774 |
| 126 | 126 | 0.893 |
| 127 | 127 | 0.0365 |
| 128 | 128 | 0.474 |
| 129 | 129 | 0.0895 |
| 13 | 13 | 0.817 |
| 130 | 130 | 0.0849 |
| 131 | 131 | 0.902 |
| 132 | 132 | 0.241 |
| 133 | 133 | 0.922 |
| 134 | 134 | 0.434 |
| 135 | 135 | 0.253 |
| 136 | 136 | 0.539 |
| 137 | 137 | 0.122 |
| 138 | 138 | 0.111 |
| 139 | 139 | 0.0368 |
| 14 | 14 | 0.458 |
| 140 | 140 | 0.262 |
| 141 | 141 | 0.343 |
| 142 | 142 | 0.947 |
| 143 | 143 | 0.0155 |
| 144 | 144 | 0.415 |
| 145 | 145 | 0.965 |
| 146 | 146 | 0.771 |
| 147 | 147 | 0.418 |
| 148 | 148 | 0.3 |
| 149 | 149 | 0.852 |
| 15 | 15 | 0.116 |
| 150 | 150 | 0.791 |
| 151 | 151 | 0.545 |
| 152 | 152 | 0.0776 |
| 153 | 153 | 0.565 |
| 154 | 154 | 0.742 |
| 155 | 155 | 0.0307 |
| 156 | 156 | 0.0278 |
| 157 | 157 | 0.317 |
| 158 | 158 | 0.0164 |
| 159 | 159 | 0.531 |
| 16 | 16 | 0.999 |
| 160 | 160 | 0.876 |
| 161 | 161 | 0.458 |
| 162 | 162 | 0.0693 |
| 163 | 163 | 0.832 |
| 164 | 164 | 0.407 |
| 165 | 165 | 0.838 |
| 166 | 166 | 0.0954 |
| 167 | 167 | 0.199 |
| 168 | 168 | 0.222 |
| 169 | 169 | 0.74 |
| 17 | 17 | 0.277 |
| 18 | 18 | 0.64 |
| 19 | 19 | 0.206 |
| 2 | 2 | 0.789 |
| 20 | 20 | 0.852 |
| 21 | 21 | 0.0159 |
| 22 | 22 | 0.946 |
| 23 | 23 | 0.0745 |
| 24 | 24 | 0.563 |
| 25 | 25 | 0.171 |
| 26 | 26 | 0.726 |
| 27 | 27 | 0.457 |
| 28 | 28 | 0.341 |
| 29 | 29 | 0.417 |
| 3 | 3 | 0.701 |
| 30 | 30 | 0.869 |
| 31 | 31 | 0.681 |
| 32 | 32 | 0.00105 |
| 33 | 33 | 0.849 |
| 34 | 34 | 0.935 |
| 35 | 35 | 0.335 |
| 36 | 36 | 0.0627 |
| 37 | 37 | 0.802 |
| 38 | 38 | 0.357 |
| 39 | 39 | 0.779 |
| 4 | 4 | 0.0256 |
| 40 | 40 | 0.00319 |
| 41 | 41 | 1.3352e-4 |
| 42 | 42 | 0.947 |
| 43 | 43 | 0.336 |
| 44 | 44 | 0.344 |
| 45 | 45 | 0.145 |
| 46 | 46 | 0.552 |
| 47 | 47 | 0.897 |
| 48 | 48 | 0.98 |
| 49 | 49 | 0.172 |
| 5 | 5 | 0.213 |
| 50 | 50 | 0.69 |
| 51 | 51 | 0.858 |
| 52 | 52 | 0.41 |
| 53 | 53 | 0.584 |
| 54 | 54 | 0.487 |
| 55 | 55 | 0.365 |
| 56 | 56 | 0.981 |
| 57 | 57 | 0.803 |
| 58 | 58 | 0.176 |
| 59 | 59 | 0.233 |
| 6 | 6 | 0.487 |
| 60 | 60 | 0.0573 |
| 61 | 61 | 0.88 |
| 62 | 62 | 0.0711 |
| 63 | 63 | 0.461 |
| 64 | 64 | 0.495 |
| 65 | 65 | 0.31 |
| 66 | 66 | 0.984 |
| 67 | 67 | 0.442 |
| 68 | 68 | 0.612 |
| 69 | 69 | 0.597 |
| 7 | 7 | 0.224 |
| 70 | 70 | 0.0438 |
| 71 | 71 | 0.547 |
| 72 | 72 | 0.843 |
| 73 | 73 | 0.757 |
| 74 | 74 | 0.249 |
| 75 | 75 | 0.419 |
| 76 | 76 | 0.628 |
| 77 | 77 | 0.538 |
| 78 | 78 | 0.303 |
| 79 | 79 | 0.0546 |
| 8 | 8 | 0.957 |
| 80 | 80 | 0.155 |
| 81 | 81 | 0.59 |
| 82 | 82 | 0.198 |
| 83 | 83 | 0.81 |
| 84 | 84 | 0.548 |
| 85 | 85 | 0.0176 |
| 86 | 86 | 0.554 |
| 87 | 87 | 0.879 |
| 88 | 88 | 0.411 |
| 89 | 89 | 0.153 |
| 9 | 9 | 0.834 |
| 90 | 90 | 0.803 |
| 91 | 91 | 0.342 |
| 92 | 92 | 0.645 |
| 93 | 93 | 0.68 |
| 94 | 94 | 0.722 |
| 95 | 95 | 0.883 |
| 96 | 96 | 0.523 |
| 97 | 97 | 0.931 |
| 98 | 98 | 0.152 |
| 99 | 99 | 0.0017 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10869
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000165 human skeletal muscle satellite cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000035 (single fate stem cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
0000034 (stem cell)
0000594 (skeletal muscle satellite cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000165 (human skeletal muscle satellite cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
