FF:11529-119I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004891 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008319;DRR009191;DRZ000616;DRZ002001;DRZ011966;DRZ013351 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0010077,UBERON:0005389,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0000484,UBERON:0001032,UBERON:0010317,UBERON:0000965,UBERON:0001803,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000255,CL:0000306,CL:0002222,CL:0002224 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000085 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor1.CNhs12342.11529-119I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor1.CNhs12342.11529-119I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor1.CNhs12342.11529-119I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor1.CNhs12342.11529-119I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor1.CNhs12342.11529-119I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11529-119I8 | |id=FF:11529-119I8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000085 | ||
|is_obsolete= | |||
|library_id=CNhs12342 | |||
|library_id_phase_based=2:CNhs12342 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11529 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11529 | |||
|name=Lens Epithelial Cells, donor1 | |name=Lens Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12342,LSID913,release011,COMPLETED | |profile_hcage=CNhs12342,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.277362132193514,0.434309992530186,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436249835173775,0,0,0,0,0,0.290021284154255,0,0,0.25502259064345,0,0,0,0,0,0,0,0,0,0,0.387979180422312,0,-0.0393849328391045,0,0,0,0,0,0,0,0,0.169774569098322,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198941491402031,0,0,0,-0.0666820816892785,0.0835890200652325,0,0,0,0,-0.0980353512377064,0.156309221960206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.114741150775265,-0.283170965997063,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.0861070383296963,0.24446403789884,0,0,-0.427279086909571,0,0.387979180422312,0,0,0,0,0,0,0,0.259859313469747,0,-0.0504125515893149,0.110065511728973,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.120528361611592,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,-0.120879483793741,0.305259012098895,0.239027369332781,0.126593404652664,-0.055712496781182,0,0,0,0.0512113452251276,-0.291656572015183,0,0,-0.121779851751874,0.0126399716504969,0,0,-0.391044581551635,0,-0.174649742240022,-0.0604397418968705,0,0.0817665096943345,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.0609905837433432,0,0,0,0,-0.370695464617039,0,0,0.611685598909545,0.115609048078671,-0.090611292374525,0.303085855233775,0,0.287183118512289,-0.0443056654417041,0.0729948311061372,-0.288500463214497,0.579320492006567,0.197997460872465,0,0.204432443489636,0.12841777718723,-0.019915513265726,0.198941491402031,0,0.0644459986940942,-0.0616220113698396,0,0,0,0.149546619063812,0,-0.141164658083686,0.0994581310454289,-0.30104629273172,0.213451943299066,-0.171315890257175,-0.058742339874173,0.06577473391982,0.154457061754485,-0.457436452896595,-0.0282287785285922,-0.0582111542148472,0,0,-0.0386753623721519,0.0637310679107662,-0.0591897657296173,-0.227846992756367,0,-0.483977461810981,-0.0683442610773682,0,0.0403365155489835,0.0972950735757068,0.387979180422312,0,-0.1907980504491,0,0,-0.0111527785139467,0,0,0.120434363669735,0.0500807024920361,-0.232855561555545,0,-0.0648886581582685,0,-0.10329649014143,0,0.0707457329031155,0,-0.298074152361292,-0.0129728625403371,0,0.03079017394122,-0.308682688525801,-0.164990696339003,0.167178040130465,-0.0584468268118252,-0.342492753353419,-0.320401471328014,-0.0736794006842254,-0.400960684367914,0.0514521501745914,1.10032730023975,0,-0.156822409140675,-0.291518951199212,-0.102865319921008,0.302555229355253,0,0.0483321000806971,0,0.221652271388402,0,0.0347242756343709,-0.54043375147324,-0.439289374580686,-0.136228441489683,0,-0.456610497669744,0.439150098106601,0,0.000847879736538104,0,0,0.237612097087673,-0.697695966512583,-0.211650427864589,0.248989723743118,0,-0.200507312867454,0,0,0.164077688942198,0.152503142657923,0,-0.0319073226423527,-0.221223733791084,-0.216236860772982,-0.115971073434934,0.387979180422312,0,0.268990068308517,0,0,-0.60592806381803,0,0.106939017419072,0.134652838935556,-0.00408035960020858,0.380153203518002,0,0,-0.177527765965176,0,0.163453309412706,0,0,-0.0558917063876675,0,0,0,0,0,0,0,0,0,0,0,0,-0.746550855550344,0.0331458502058641,0,0.0896742170855318,0,0,0,0,0,0,0,0,0.288781501592532,0,-0.12301741567642,0,0,0,0,0.172255777868837,0.184742618327588,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.0342669684430585,0,0,0,0.312618443920412,0,0,0,-0.0508864193012211,-0.0890338598053244,0,0,0.0947921679913252,0,-0.0514115255627219,-0.0815818795468414,0,0.066248817471637,0.475985904953764,0.33677752900621,0,0,-0.261347131789888,0,0,0.00950360415869622,0,0,-0.0209247759461169,0,0,0,0,0,0,0.173664668022556,0,0,0,0,0,0,0,0,0,0,0,-0.126097618268596,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.11760548878875,0,0,0,0,0,0,0,0,0.255296401714463,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.48064080463806,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.442733185825865,0,0,0,0,0,0,0,-0.27483329820609,0,0.387979180422312,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00250514396070756,0,0.0404278803434838,-0.0568589461625992,0,0,0.0621580701280595,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.290021284154255,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0068095821043918,0.274130361076861,-0.025187642555139,0,0,0,0.240400850278646,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436249835173775,0,0,0,0,0,0,0,0,0,0,0,0,0.193989590211156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307960712153674,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0174496865280825,0,0,0,0,0,0,0,0,0.387979180422312,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0.387979180422312,0,0,0,0,0,0,0,0,0,0,-0.1625248620934,0,0,0,0,0.541935734861284,0,0,0,0,0,0,0.387979180422312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.045332691965898,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.339549138196643,0,0,0,0,0,0,0,0,0.726722341377705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.127355744603297,-0.283170965997063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.354724076107398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC6555 | |rna_catalog_number=SC6555 | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.89609121140349e-216!GO:0005737;cytoplasm;3.50760112749079e-193!GO:0043226;organelle;4.59162197699974e-169!GO:0043229;intracellular organelle;7.76123217078544e-169!GO:0043231;intracellular membrane-bound organelle;1.19625507822581e-164!GO:0043227;membrane-bound organelle;2.80792041397786e-164!GO:0044422;organelle part;6.76037217311598e-145!GO:0044446;intracellular organelle part;1.5526992580692e-143!GO:0044444;cytoplasmic part;1.54280637130428e-137!GO:0032991;macromolecular complex;1.7484753401964e-106!GO:0030529;ribonucleoprotein complex;3.04003462535502e-89!GO:0005515;protein binding;1.05245509884469e-78!GO:0044237;cellular metabolic process;3.10033933746177e-76!GO:0044238;primary metabolic process;2.59251205292375e-74!GO:0043233;organelle lumen;5.70948125206792e-74!GO:0031974;membrane-enclosed lumen;5.70948125206792e-74!GO:0005739;mitochondrion;1.60047630762917e-73!GO:0003723;RNA binding;6.32967919822653e-69!GO:0044428;nuclear part;1.10420616335548e-67!GO:0043170;macromolecule metabolic process;4.39528423525545e-63!GO:0005840;ribosome;2.28437759560725e-55!GO:0043234;protein complex;1.16089982808317e-54!GO:0005634;nucleus;6.23424497585326e-54!GO:0006412;translation;1.20179175069305e-53!GO:0016043;cellular component organization and biogenesis;1.60104259793022e-52!GO:0044429;mitochondrial part;5.4842254079073e-51!GO:0031090;organelle membrane;4.58141659167264e-50!GO:0003735;structural constituent of ribosome;1.13954977419049e-48!GO:0009058;biosynthetic process;3.08638881858802e-48!GO:0044249;cellular biosynthetic process;4.28629611187085e-47!GO:0006396;RNA processing;5.67074474854038e-47!GO:0019538;protein metabolic process;7.15804562310286e-47!GO:0031967;organelle envelope;2.45206612525648e-44!GO:0031975;envelope;5.95052657068983e-44!GO:0033036;macromolecule localization;2.87380183892844e-43!GO:0033279;ribosomal subunit;1.05560553811375e-42!GO:0044260;cellular macromolecule metabolic process;1.41255010313282e-42!GO:0015031;protein transport;2.46698310775506e-42!GO:0031981;nuclear lumen;1.32014905930615e-41!GO:0044267;cellular protein metabolic process;2.57032025586226e-41!GO:0005829;cytosol;4.66697163788068e-41!GO:0009059;macromolecule biosynthetic process;8.05718389180336e-41!GO:0008104;protein localization;4.16345152229121e-40!GO:0045184;establishment of protein localization;6.36745621668041e-40!GO:0043228;non-membrane-bound organelle;4.36155317385992e-36!GO:0043232;intracellular non-membrane-bound organelle;4.36155317385992e-36!GO:0046907;intracellular transport;1.82891680998124e-35!GO:0016071;mRNA metabolic process;4.65356074099642e-35!GO:0006996;organelle organization and biogenesis;3.19898959862976e-34!GO:0005740;mitochondrial envelope;3.40791936465288e-33!GO:0008380;RNA splicing;4.29790047585637e-33!GO:0065003;macromolecular complex assembly;1.10152288338323e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.59423068869405e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.71685958336855e-31!GO:0031966;mitochondrial membrane;3.04533458514692e-31!GO:0006397;mRNA processing;2.59039251519419e-30!GO:0019866;organelle inner membrane;2.87628856321549e-30!GO:0022607;cellular component assembly;4.642446072155e-29!GO:0006886;intracellular protein transport;4.9161798484763e-29!GO:0005743;mitochondrial inner membrane;1.81578622769356e-28!GO:0043283;biopolymer metabolic process;3.3653871169454e-28!GO:0010467;gene expression;6.61201792218781e-27!GO:0044445;cytosolic part;2.51162643740242e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.89998441597777e-26!GO:0006259;DNA metabolic process;1.28085766120962e-25!GO:0005681;spliceosome;2.04121474614383e-24!GO:0006119;oxidative phosphorylation;4.09570285747055e-24!GO:0005654;nucleoplasm;6.04237515163275e-24!GO:0016462;pyrophosphatase activity;2.13408295486475e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.65058321491674e-23!GO:0051649;establishment of cellular localization;4.23900946873713e-23!GO:0051641;cellular localization;4.45662800023604e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;5.27681013192135e-23!GO:0044455;mitochondrial membrane part;2.03832037818979e-22!GO:0017111;nucleoside-triphosphatase activity;3.54521440963311e-22!GO:0015935;small ribosomal subunit;6.61317541883522e-22!GO:0031980;mitochondrial lumen;7.41264344634274e-22!GO:0005759;mitochondrial matrix;7.41264344634274e-22!GO:0015934;large ribosomal subunit;7.61734252210831e-22!GO:0006457;protein folding;1.31520356100655e-21!GO:0000166;nucleotide binding;6.13993547723234e-21!GO:0007049;cell cycle;1.02741158880576e-20!GO:0044451;nucleoplasm part;2.48822291782113e-19!GO:0005783;endoplasmic reticulum;3.37406568389839e-19!GO:0012505;endomembrane system;3.44253891697398e-19!GO:0005746;mitochondrial respiratory chain;1.98149866329289e-18!GO:0005730;nucleolus;4.74256227190389e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.22559866263488e-17!GO:0022618;protein-RNA complex assembly;1.58935940347168e-17!GO:0048770;pigment granule;1.92638075832872e-17!GO:0042470;melanosome;1.92638075832872e-17!GO:0044265;cellular macromolecule catabolic process;9.10128487408219e-17!GO:0000502;proteasome complex (sensu Eukaryota);9.10128487408219e-17!GO:0000278;mitotic cell cycle;9.84067865686178e-17!GO:0044432;endoplasmic reticulum part;1.05561939784791e-16!GO:0005761;mitochondrial ribosome;1.97836448983353e-16!GO:0000313;organellar ribosome;1.97836448983353e-16!GO:0022402;cell cycle process;2.33784937021853e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.3489640643454e-16!GO:0003954;NADH dehydrogenase activity;2.3489640643454e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.3489640643454e-16!GO:0051186;cofactor metabolic process;2.44416793497143e-16!GO:0051082;unfolded protein binding;6.78504948715232e-16!GO:0016874;ligase activity;7.50246443748981e-16!GO:0044248;cellular catabolic process;7.68562166899927e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.87127525826703e-16!GO:0009057;macromolecule catabolic process;1.07353025747506e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.26918648261814e-15!GO:0042775;organelle ATP synthesis coupled electron transport;8.02343905963898e-15!GO:0042773;ATP synthesis coupled electron transport;8.02343905963898e-15!GO:0042254;ribosome biogenesis and assembly;8.42311863746822e-15!GO:0043285;biopolymer catabolic process;8.50310535095901e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.20892165894856e-14!GO:0045271;respiratory chain complex I;1.20892165894856e-14!GO:0005747;mitochondrial respiratory chain complex I;1.20892165894856e-14!GO:0006605;protein targeting;1.32754745048081e-14!GO:0008135;translation factor activity, nucleic acid binding;1.84330843595948e-14!GO:0032553;ribonucleotide binding;3.67422408570676e-14!GO:0032555;purine ribonucleotide binding;3.67422408570676e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.87463337103574e-14!GO:0017076;purine nucleotide binding;4.72052015691767e-14!GO:0008134;transcription factor binding;4.72613555832768e-14!GO:0005794;Golgi apparatus;6.86917101143961e-14!GO:0005694;chromosome;9.52304232200548e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.25852492023817e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;2.1732514475222e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.61002366817327e-13!GO:0000375;RNA splicing, via transesterification reactions;2.61002366817327e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.61002366817327e-13!GO:0019941;modification-dependent protein catabolic process;3.39625087762014e-13!GO:0043632;modification-dependent macromolecule catabolic process;3.39625087762014e-13!GO:0044257;cellular protein catabolic process;4.79042790190138e-13!GO:0006511;ubiquitin-dependent protein catabolic process;4.95356076205211e-13!GO:0006512;ubiquitin cycle;5.04976460654075e-13!GO:0006974;response to DNA damage stimulus;6.55622504055295e-13!GO:0009055;electron carrier activity;9.46064428439353e-13!GO:0006732;coenzyme metabolic process;1.28749501730524e-12!GO:0044427;chromosomal part;2.01940295440381e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.12722035432505e-12!GO:0030163;protein catabolic process;5.08533534350615e-12!GO:0005635;nuclear envelope;5.32489446660118e-12!GO:0005789;endoplasmic reticulum membrane;6.88053897050843e-12!GO:0048193;Golgi vesicle transport;7.09961649381553e-12!GO:0000087;M phase of mitotic cell cycle;9.50700635830439e-12!GO:0007067;mitosis;1.1310717406387e-11!GO:0009259;ribonucleotide metabolic process;1.17143252414897e-11!GO:0051276;chromosome organization and biogenesis;1.18816508384778e-11!GO:0022403;cell cycle phase;1.25760996432205e-11!GO:0016887;ATPase activity;1.78158091646136e-11!GO:0044453;nuclear membrane part;2.28431291929631e-11!GO:0005524;ATP binding;2.49558378425613e-11!GO:0003743;translation initiation factor activity;3.18387408976739e-11!GO:0016192;vesicle-mediated transport;3.27859758364232e-11!GO:0032559;adenyl ribonucleotide binding;3.34956153304665e-11!GO:0003676;nucleic acid binding;3.69210974666552e-11!GO:0031965;nuclear membrane;3.80737678876071e-11!GO:0006413;translational initiation;3.87533704804677e-11!GO:0006163;purine nucleotide metabolic process;4.47075802543329e-11!GO:0042623;ATPase activity, coupled;4.96104303975689e-11!GO:0012501;programmed cell death;5.40987990767029e-11!GO:0030554;adenyl nucleotide binding;5.52526016758029e-11!GO:0006281;DNA repair;6.16380220036513e-11!GO:0065004;protein-DNA complex assembly;7.43296673565358e-11!GO:0006915;apoptosis;9.96078148829724e-11!GO:0006399;tRNA metabolic process;1.23545426855745e-10!GO:0009150;purine ribonucleotide metabolic process;1.45015517912195e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.05551229311869e-10!GO:0006446;regulation of translational initiation;2.12087737327604e-10!GO:0009260;ribonucleotide biosynthetic process;2.58775848263115e-10!GO:0006164;purine nucleotide biosynthetic process;2.64679143640307e-10!GO:0005793;ER-Golgi intermediate compartment;2.70372996121361e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.1828460832049e-10!GO:0006333;chromatin assembly or disassembly;4.14745736385042e-10!GO:0006260;DNA replication;4.87644427257069e-10!GO:0000074;regulation of progression through cell cycle;6.4930408111431e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;6.71944558012324e-10!GO:0006364;rRNA processing;7.5869943659607e-10!GO:0051301;cell division;7.76633091478813e-10!GO:0009152;purine ribonucleotide biosynthetic process;8.33195484499797e-10!GO:0051726;regulation of cell cycle;9.50216719922727e-10!GO:0008219;cell death;1.16727360947906e-09!GO:0016265;death;1.16727360947906e-09!GO:0009056;catabolic process;1.25445159095583e-09!GO:0006913;nucleocytoplasmic transport;1.40246375199897e-09!GO:0043412;biopolymer modification;1.46838251521805e-09!GO:0009719;response to endogenous stimulus;1.602540161219e-09!GO:0016072;rRNA metabolic process;1.75734322150032e-09!GO:0009141;nucleoside triphosphate metabolic process;2.0041585588029e-09!GO:0006323;DNA packaging;2.01449837027074e-09!GO:0008565;protein transporter activity;2.26246040631133e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.45531382882916e-09!GO:0016604;nuclear body;2.50541474334472e-09!GO:0005643;nuclear pore;2.51966873741704e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.91021306754884e-09!GO:0051169;nuclear transport;3.29250353265314e-09!GO:0009117;nucleotide metabolic process;3.81699412451914e-09!GO:0048523;negative regulation of cellular process;4.36838842616283e-09!GO:0000785;chromatin;4.38211632278027e-09!GO:0006334;nucleosome assembly;4.62607316071339e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.64289283165543e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.64289283165543e-09!GO:0003712;transcription cofactor activity;5.50427655766973e-09!GO:0030532;small nuclear ribonucleoprotein complex;5.92180679050425e-09!GO:0016491;oxidoreductase activity;5.95680140826347e-09!GO:0003924;GTPase activity;6.45823009940438e-09!GO:0051188;cofactor biosynthetic process;6.45823009940438e-09!GO:0009142;nucleoside triphosphate biosynthetic process;7.47803989960074e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.47803989960074e-09!GO:0065002;intracellular protein transport across a membrane;8.88912568447908e-09!GO:0007005;mitochondrion organization and biogenesis;1.10163186223319e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.21387599900252e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.21387599900252e-08!GO:0000279;M phase;1.29656390184443e-08!GO:0006464;protein modification process;1.31330136831938e-08!GO:0015986;ATP synthesis coupled proton transport;1.31330136831938e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.31330136831938e-08!GO:0009060;aerobic respiration;1.77388458620634e-08!GO:0051246;regulation of protein metabolic process;2.39859078057914e-08!GO:0006461;protein complex assembly;2.63796733951311e-08!GO:0004386;helicase activity;3.08421248545513e-08!GO:0008026;ATP-dependent helicase activity;3.58850781308102e-08!GO:0031497;chromatin assembly;3.90656635140558e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.46791853424139e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.63242247323272e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.63242247323272e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.63242247323272e-08!GO:0046930;pore complex;5.53938830811263e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.7758101762064e-08!GO:0019829;cation-transporting ATPase activity;5.87321622985506e-08!GO:0046034;ATP metabolic process;6.09133268361656e-08!GO:0045333;cellular respiration;6.09133268361656e-08!GO:0043067;regulation of programmed cell death;6.43011621688238e-08!GO:0043069;negative regulation of programmed cell death;7.3261920333704e-08!GO:0030120;vesicle coat;7.71341040216149e-08!GO:0030662;coated vesicle membrane;7.71341040216149e-08!GO:0017038;protein import;7.8424632422852e-08!GO:0042981;regulation of apoptosis;7.87662394872051e-08!GO:0048519;negative regulation of biological process;8.38667225116991e-08!GO:0043038;amino acid activation;8.39821592007216e-08!GO:0006418;tRNA aminoacylation for protein translation;8.39821592007216e-08!GO:0043039;tRNA aminoacylation;8.39821592007216e-08!GO:0008639;small protein conjugating enzyme activity;9.98262223362241e-08!GO:0043687;post-translational protein modification;1.00501318118441e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.03215373595691e-07!GO:0016607;nuclear speck;1.0552350853369e-07!GO:0006403;RNA localization;1.10866125797064e-07!GO:0050657;nucleic acid transport;1.22945808520655e-07!GO:0051236;establishment of RNA localization;1.22945808520655e-07!GO:0050658;RNA transport;1.22945808520655e-07!GO:0006754;ATP biosynthetic process;1.29987692276432e-07!GO:0006753;nucleoside phosphate metabolic process;1.29987692276432e-07!GO:0043066;negative regulation of apoptosis;1.93640817974446e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.93640817974446e-07!GO:0048475;coated membrane;1.95180765234359e-07!GO:0030117;membrane coat;1.95180765234359e-07!GO:0019787;small conjugating protein ligase activity;1.96083217967787e-07!GO:0004842;ubiquitin-protein ligase activity;2.10300155465324e-07!GO:0016070;RNA metabolic process;2.45564021845268e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.40363379773304e-07!GO:0015630;microtubule cytoskeleton;5.353729835609e-07!GO:0006091;generation of precursor metabolites and energy;5.93327864986831e-07!GO:0005788;endoplasmic reticulum lumen;7.24953496102482e-07!GO:0016787;hydrolase activity;8.83238067154065e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.7484721505347e-07!GO:0006099;tricarboxylic acid cycle;1.02986126584248e-06!GO:0046356;acetyl-CoA catabolic process;1.02986126584248e-06!GO:0045259;proton-transporting ATP synthase complex;1.0610789947852e-06!GO:0016853;isomerase activity;1.104858901309e-06!GO:0009108;coenzyme biosynthetic process;1.21781246889917e-06!GO:0006084;acetyl-CoA metabolic process;1.27745056595601e-06!GO:0016881;acid-amino acid ligase activity;1.59552047653818e-06!GO:0016779;nucleotidyltransferase activity;2.2665304627395e-06!GO:0006916;anti-apoptosis;2.26930799763223e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.42664899952291e-06!GO:0003697;single-stranded DNA binding;2.75685493694768e-06!GO:0005762;mitochondrial large ribosomal subunit;2.89985706997706e-06!GO:0000315;organellar large ribosomal subunit;2.89985706997706e-06!GO:0005768;endosome;3.90180746269851e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.24297674310642e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.50418699322929e-06!GO:0051028;mRNA transport;5.09402431987425e-06!GO:0005667;transcription factor complex;5.38759971786084e-06!GO:0031988;membrane-bound vesicle;5.53659274379297e-06!GO:0032446;protein modification by small protein conjugation;5.58856491741476e-06!GO:0006752;group transfer coenzyme metabolic process;6.5106346683676e-06!GO:0000245;spliceosome assembly;6.51964627108679e-06!GO:0051329;interphase of mitotic cell cycle;6.75545107974014e-06!GO:0015980;energy derivation by oxidation of organic compounds;6.99045438270363e-06!GO:0051187;cofactor catabolic process;7.61893263986579e-06!GO:0016740;transferase activity;7.62980191155795e-06!GO:0009109;coenzyme catabolic process;8.65621813489737e-06!GO:0006366;transcription from RNA polymerase II promoter;8.84637697479961e-06!GO:0016567;protein ubiquitination;1.08853816624194e-05!GO:0051325;interphase;1.10981629532726e-05!GO:0043566;structure-specific DNA binding;1.16765068448565e-05!GO:0004298;threonine endopeptidase activity;1.27021666916683e-05!GO:0006613;cotranslational protein targeting to membrane;1.52116533506787e-05!GO:0009165;nucleotide biosynthetic process;1.60113208658569e-05!GO:0003899;DNA-directed RNA polymerase activity;1.7896220506478e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.7896220506478e-05!GO:0044431;Golgi apparatus part;1.80319901103428e-05!GO:0006793;phosphorus metabolic process;1.96902295087725e-05!GO:0006796;phosphate metabolic process;1.96902295087725e-05!GO:0000151;ubiquitin ligase complex;2.08511957047259e-05!GO:0031410;cytoplasmic vesicle;2.105354031637e-05!GO:0031982;vesicle;2.16311260790319e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.36571157568101e-05!GO:0016126;sterol biosynthetic process;2.40555767338364e-05!GO:0005525;GTP binding;2.47487498623661e-05!GO:0031252;leading edge;2.67313745126611e-05!GO:0031968;organelle outer membrane;2.69069457884674e-05!GO:0005819;spindle;3.10210075384644e-05!GO:0019867;outer membrane;3.2629038628663e-05!GO:0000314;organellar small ribosomal subunit;3.36785125551428e-05!GO:0005763;mitochondrial small ribosomal subunit;3.36785125551428e-05!GO:0030867;rough endoplasmic reticulum membrane;3.71530177082026e-05!GO:0003713;transcription coactivator activity;3.74498737532774e-05!GO:0051427;hormone receptor binding;3.74498737532774e-05!GO:0003724;RNA helicase activity;3.81937466484373e-05!GO:0006695;cholesterol biosynthetic process;3.8339729674502e-05!GO:0051170;nuclear import;4.10880412369673e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.19901838293324e-05!GO:0005798;Golgi-associated vesicle;4.49748937665286e-05!GO:0045454;cell redox homeostasis;4.70047036158462e-05!GO:0045786;negative regulation of progression through cell cycle;4.79006657016863e-05!GO:0016310;phosphorylation;5.10972001211484e-05!GO:0005813;centrosome;5.16139717499128e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.32587289040227e-05!GO:0016859;cis-trans isomerase activity;6.43788518163983e-05!GO:0044262;cellular carbohydrate metabolic process;6.48345547640131e-05!GO:0000786;nucleosome;6.53952646017691e-05!GO:0043623;cellular protein complex assembly;6.55512807140461e-05!GO:0007010;cytoskeleton organization and biogenesis;6.56648390942568e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.82386403200911e-05!GO:0005905;coated pit;7.15746848548163e-05!GO:0043021;ribonucleoprotein binding;7.25331028295242e-05!GO:0035257;nuclear hormone receptor binding;8.07813380690391e-05!GO:0016563;transcription activator activity;8.43056711891971e-05!GO:0005741;mitochondrial outer membrane;8.89148389586953e-05!GO:0005770;late endosome;8.90829088685827e-05!GO:0006606;protein import into nucleus;9.25291310065539e-05!GO:0016568;chromatin modification;9.93614994952942e-05!GO:0031324;negative regulation of cellular metabolic process;0.000123929680788677!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000127974268832035!GO:0001558;regulation of cell growth;0.000131510374369029!GO:0005815;microtubule organizing center;0.000136258253544564!GO:0044440;endosomal part;0.000136693156731448!GO:0010008;endosome membrane;0.000136693156731448!GO:0006839;mitochondrial transport;0.000149206814217914!GO:0008654;phospholipid biosynthetic process;0.000153322647753178!GO:0042802;identical protein binding;0.000155904552346585!GO:0032561;guanyl ribonucleotide binding;0.000155904552346585!GO:0019001;guanyl nucleotide binding;0.000155904552346585!GO:0000075;cell cycle checkpoint;0.000173508801669036!GO:0019899;enzyme binding;0.000174178022433888!GO:0006261;DNA-dependent DNA replication;0.000176916672055799!GO:0019843;rRNA binding;0.000188760025861752!GO:0006414;translational elongation;0.000192388916259143!GO:0048522;positive regulation of cellular process;0.000207982706812611!GO:0007051;spindle organization and biogenesis;0.000209969494987348!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00021347601029548!GO:0016363;nuclear matrix;0.000234392906800521!GO:0048471;perinuclear region of cytoplasm;0.000237635977966284!GO:0033116;ER-Golgi intermediate compartment membrane;0.000245350627981636!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000250111394094034!GO:0015399;primary active transmembrane transporter activity;0.000250111394094034!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000276704778855125!GO:0008361;regulation of cell size;0.000277473110789126!GO:0030036;actin cytoskeleton organization and biogenesis;0.000298716009418951!GO:0005885;Arp2/3 protein complex;0.000309196597602835!GO:0016049;cell growth;0.000341095034498224!GO:0006626;protein targeting to mitochondrion;0.00036445956905171!GO:0008250;oligosaccharyl transferase complex;0.000373001232042727!GO:0003714;transcription corepressor activity;0.000380929941302447!GO:0043681;protein import into mitochondrion;0.000385972644525933!GO:0008033;tRNA processing;0.000396199372941201!GO:0044452;nucleolar part;0.000440779213911352!GO:0016564;transcription repressor activity;0.000443535479145976!GO:0030133;transport vesicle;0.000453850849349234!GO:0051789;response to protein stimulus;0.000485498345262189!GO:0006986;response to unfolded protein;0.000485498345262189!GO:0005773;vacuole;0.000524399537384745!GO:0006612;protein targeting to membrane;0.000546389178574665!GO:0009892;negative regulation of metabolic process;0.000566339455953272!GO:0005791;rough endoplasmic reticulum;0.000570282088731885!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000590862030973939!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000615755607564104!GO:0065009;regulation of a molecular function;0.000705328891168568!GO:0008186;RNA-dependent ATPase activity;0.000711279029844015!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000735265403531999!GO:0004576;oligosaccharyl transferase activity;0.000735280878149627!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000735280878149627!GO:0051920;peroxiredoxin activity;0.000739616531762577!GO:0008610;lipid biosynthetic process;0.000809453141263324!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00083037202805929!GO:0043284;biopolymer biosynthetic process;0.000853392223501008!GO:0018196;peptidyl-asparagine modification;0.000867297168377027!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000867297168377027!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000937517004250144!GO:0016044;membrane organization and biogenesis;0.00102410769705804!GO:0000139;Golgi membrane;0.00108384381256653!GO:0051168;nuclear export;0.00109673540363711!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00111368828004306!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00115457642050685!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00115457642050685!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00115457642050685!GO:0005048;signal sequence binding;0.00117223504002704!GO:0006007;glucose catabolic process;0.00123725922407986!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00127203525360104!GO:0030118;clathrin coat;0.00139502997708872!GO:0005657;replication fork;0.00143684782240325!GO:0031072;heat shock protein binding;0.00148923082165065!GO:0030029;actin filament-based process;0.00153368386896157!GO:0006082;organic acid metabolic process;0.00154088115903839!GO:0003729;mRNA binding;0.00156268773779557!GO:0015992;proton transport;0.00156347983889362!GO:0000059;protein import into nucleus, docking;0.00157519637805868!GO:0030658;transport vesicle membrane;0.00157886855618747!GO:0050794;regulation of cellular process;0.0015853795288623!GO:0048468;cell development;0.00167749540239174!GO:0007006;mitochondrial membrane organization and biogenesis;0.00169238801639858!GO:0019752;carboxylic acid metabolic process;0.00170908414549412!GO:0007093;mitotic cell cycle checkpoint;0.00175866994006627!GO:0000775;chromosome, pericentric region;0.00178146158224848!GO:0006818;hydrogen transport;0.00179748531372331!GO:0004004;ATP-dependent RNA helicase activity;0.00192843440231226!GO:0005769;early endosome;0.00192843440231226!GO:0005684;U2-dependent spliceosome;0.00202893854760326!GO:0008092;cytoskeletal protein binding;0.00216699169303174!GO:0000082;G1/S transition of mitotic cell cycle;0.00219710612025872!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00220328657094117!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00220328657094117!GO:0030132;clathrin coat of coated pit;0.00233120087334916!GO:0008094;DNA-dependent ATPase activity;0.0024496126429496!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0024496126429496!GO:0048500;signal recognition particle;0.00247347198834318!GO:0035258;steroid hormone receptor binding;0.002536623643353!GO:0040008;regulation of growth;0.00260153082179678!GO:0008632;apoptotic program;0.00265359547331035!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0028944468886893!GO:0015002;heme-copper terminal oxidase activity;0.0028944468886893!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0028944468886893!GO:0004129;cytochrome-c oxidase activity;0.0028944468886893!GO:0000323;lytic vacuole;0.00299790759995717!GO:0005764;lysosome;0.00299790759995717!GO:0043492;ATPase activity, coupled to movement of substances;0.00301835418900445!GO:0030119;AP-type membrane coat adaptor complex;0.00309364041319563!GO:0007088;regulation of mitosis;0.00320919187144096!GO:0046483;heterocycle metabolic process;0.00322465727857551!GO:0030663;COPI coated vesicle membrane;0.00329019345957679!GO:0030126;COPI vesicle coat;0.00329019345957679!GO:0051287;NAD binding;0.0033755688885426!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00340737851499604!GO:0051252;regulation of RNA metabolic process;0.00345478210293254!GO:0031543;peptidyl-proline dioxygenase activity;0.00345478210293254!GO:0016272;prefoldin complex;0.00349265766312801!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00353554077674182!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0035811075627787!GO:0006402;mRNA catabolic process;0.00370624830236729!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00372507747324995!GO:0000776;kinetochore;0.0038286103609809!GO:0003684;damaged DNA binding;0.00390184750229392!GO:0007243;protein kinase cascade;0.00390554857604281!GO:0017166;vinculin binding;0.00397943418843457!GO:0030521;androgen receptor signaling pathway;0.0039912584163646!GO:0003682;chromatin binding;0.0041667495844583!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0041916319287599!GO:0030660;Golgi-associated vesicle membrane;0.00422721123257443!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00460027828789333!GO:0006352;transcription initiation;0.00465543713258976!GO:0003678;DNA helicase activity;0.00468066582309567!GO:0050662;coenzyme binding;0.00475653796873774!GO:0030131;clathrin adaptor complex;0.00486286355847783!GO:0006950;response to stress;0.0049205321166604!GO:0006595;polyamine metabolic process;0.0050641051552144!GO:0008312;7S RNA binding;0.00538084095036163!GO:0006979;response to oxidative stress;0.00540903956309307!GO:0022890;inorganic cation transmembrane transporter activity;0.00556177132262634!GO:0006740;NADPH regeneration;0.00566955041470148!GO:0006098;pentose-phosphate shunt;0.00566955041470148!GO:0006778;porphyrin metabolic process;0.00571114842188583!GO:0033013;tetrapyrrole metabolic process;0.00571114842188583!GO:0006417;regulation of translation;0.00571307414469054!GO:0030137;COPI-coated vesicle;0.00578645574639819!GO:0030134;ER to Golgi transport vesicle;0.00578645574639819!GO:0006401;RNA catabolic process;0.00590773294245519!GO:0000049;tRNA binding;0.00592664070753874!GO:0006066;alcohol metabolic process;0.00595738658339425!GO:0030176;integral to endoplasmic reticulum membrane;0.0059781468552491!GO:0030880;RNA polymerase complex;0.00621666225538533!GO:0007050;cell cycle arrest;0.00621733140458336!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00629327380517152!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00629327380517152!GO:0045047;protein targeting to ER;0.00629327380517152!GO:0046474;glycerophospholipid biosynthetic process;0.00632857411357505!GO:0006383;transcription from RNA polymerase III promoter;0.00633296041747646!GO:0019798;procollagen-proline dioxygenase activity;0.00646858687110595!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00657130552548745!GO:0005869;dynactin complex;0.00662545626582791!GO:0048487;beta-tubulin binding;0.00671256114509145!GO:0048518;positive regulation of biological process;0.00686323347681704!GO:0030127;COPII vesicle coat;0.00686323347681704!GO:0012507;ER to Golgi transport vesicle membrane;0.00686323347681704!GO:0046365;monosaccharide catabolic process;0.00712836738774863!GO:0045792;negative regulation of cell size;0.0073846063475765!GO:0051087;chaperone binding;0.00743458707071336!GO:0033673;negative regulation of kinase activity;0.00765953425401753!GO:0006469;negative regulation of protein kinase activity;0.00765953425401753!GO:0030308;negative regulation of cell growth;0.00779557965474519!GO:0030125;clathrin vesicle coat;0.00793434803139259!GO:0030665;clathrin coated vesicle membrane;0.00793434803139259!GO:0006509;membrane protein ectodomain proteolysis;0.0079592883800041!GO:0033619;membrane protein proteolysis;0.0079592883800041!GO:0005996;monosaccharide metabolic process;0.00803215304543215!GO:0006779;porphyrin biosynthetic process;0.00806039142754342!GO:0033014;tetrapyrrole biosynthetic process;0.00806039142754342!GO:0006289;nucleotide-excision repair;0.00806886604689967!GO:0007052;mitotic spindle organization and biogenesis;0.00809732464514575!GO:0031970;organelle envelope lumen;0.00810568573396032!GO:0009116;nucleoside metabolic process;0.00819425655070725!GO:0051348;negative regulation of transferase activity;0.00823554124414653!GO:0001726;ruffle;0.00848264262714201!GO:0006302;double-strand break repair;0.00848264262714201!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00849820495059731!GO:0015631;tubulin binding;0.00854564352455224!GO:0045941;positive regulation of transcription;0.00865784722348602!GO:0046467;membrane lipid biosynthetic process;0.00884360006050542!GO:0019318;hexose metabolic process;0.00902821885821791!GO:0006118;electron transport;0.0092632835591186!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00955263633642581!GO:0008180;signalosome;0.00955542139705549!GO:0045936;negative regulation of phosphate metabolic process;0.00973045847228745!GO:0051270;regulation of cell motility;0.00982838722702462!GO:0050681;androgen receptor binding;0.0101428207035599!GO:0000339;RNA cap binding;0.0101570585568344!GO:0030659;cytoplasmic vesicle membrane;0.0103679264007606!GO:0051052;regulation of DNA metabolic process;0.0103679264007606!GO:0043022;ribosome binding;0.0104164164886919!GO:0032508;DNA duplex unwinding;0.0104164164886919!GO:0032392;DNA geometric change;0.0104164164886919!GO:0045893;positive regulation of transcription, DNA-dependent;0.0106268411350483!GO:0016197;endosome transport;0.0106268411350483!GO:0046164;alcohol catabolic process;0.0108615153038505!GO:0030027;lamellipodium;0.0111315826030701!GO:0005874;microtubule;0.0111315826030701!GO:0043488;regulation of mRNA stability;0.0111315826030701!GO:0043487;regulation of RNA stability;0.0111315826030701!GO:0008022;protein C-terminus binding;0.0111315826030701!GO:0005832;chaperonin-containing T-complex;0.0114204864258383!GO:0005637;nuclear inner membrane;0.0114953389336139!GO:0019320;hexose catabolic process;0.0115292571972155!GO:0006144;purine base metabolic process;0.0116724916888574!GO:0004003;ATP-dependent DNA helicase activity;0.0116724916888574!GO:0051098;regulation of binding;0.0116724916888574!GO:0006520;amino acid metabolic process;0.011709399611116!GO:0007264;small GTPase mediated signal transduction;0.0118747237157573!GO:0016481;negative regulation of transcription;0.0119759540159809!GO:0050790;regulation of catalytic activity;0.0120153964438908!GO:0005862;muscle thin filament tropomyosin;0.0122844963190382!GO:0016125;sterol metabolic process;0.012445558971402!GO:0006220;pyrimidine nucleotide metabolic process;0.0124599228811461!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0129113031497919!GO:0000428;DNA-directed RNA polymerase complex;0.0129113031497919!GO:0008139;nuclear localization sequence binding;0.0134483351380782!GO:0016408;C-acyltransferase activity;0.0137315253085648!GO:0003690;double-stranded DNA binding;0.0138355866415496!GO:0009889;regulation of biosynthetic process;0.0142525179541624!GO:0006611;protein export from nucleus;0.014443842413593!GO:0001666;response to hypoxia;0.0145509824935176!GO:0040011;locomotion;0.0147332035132028!GO:0008047;enzyme activator activity;0.015060090023989!GO:0031529;ruffle organization and biogenesis;0.0150795588636598!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0151397877871419!GO:0000287;magnesium ion binding;0.0156642001344259!GO:0006720;isoprenoid metabolic process;0.0156959837027108!GO:0016860;intramolecular oxidoreductase activity;0.0156959837027108!GO:0016584;nucleosome positioning;0.0162122974803271!GO:0007040;lysosome organization and biogenesis;0.0163411924537893!GO:0051128;regulation of cellular component organization and biogenesis;0.0168693550168562!GO:0031326;regulation of cellular biosynthetic process;0.0170920235845366!GO:0000178;exosome (RNase complex);0.0176099137154385!GO:0042168;heme metabolic process;0.0176474055435954!GO:0046519;sphingoid metabolic process;0.0177173198967565!GO:0051539;4 iron, 4 sulfur cluster binding;0.0178194027301853!GO:0006268;DNA unwinding during replication;0.0186159057789066!GO:0006891;intra-Golgi vesicle-mediated transport;0.0190383434314433!GO:0030032;lamellipodium biogenesis;0.0192670495014224!GO:0051101;regulation of DNA binding;0.0192883436946231!GO:0003711;transcription elongation regulator activity;0.0195358389124266!GO:0005758;mitochondrial intermembrane space;0.019674538225239!GO:0051540;metal cluster binding;0.019674538225239!GO:0051536;iron-sulfur cluster binding;0.019674538225239!GO:0003746;translation elongation factor activity;0.0197493309564719!GO:0050789;regulation of biological process;0.0198232444578302!GO:0040012;regulation of locomotion;0.0199276095148842!GO:0009303;rRNA transcription;0.0200333141795696!GO:0022411;cellular component disassembly;0.0200333141795696!GO:0044433;cytoplasmic vesicle part;0.0201702529485024!GO:0009112;nucleobase metabolic process;0.0205689168102638!GO:0007033;vacuole organization and biogenesis;0.0209478139956801!GO:0048144;fibroblast proliferation;0.0209478139956801!GO:0048145;regulation of fibroblast proliferation;0.0209478139956801!GO:0006405;RNA export from nucleus;0.0210891783446962!GO:0051272;positive regulation of cell motility;0.0210891783446962!GO:0040017;positive regulation of locomotion;0.0210891783446962!GO:0000086;G2/M transition of mitotic cell cycle;0.0215335482237582!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0218574428856594!GO:0016251;general RNA polymerase II transcription factor activity;0.0219277626110805!GO:0016741;transferase activity, transferring one-carbon groups;0.022109041583667!GO:0006096;glycolysis;0.022311608902756!GO:0046489;phosphoinositide biosynthetic process;0.0224015227249539!GO:0022408;negative regulation of cell-cell adhesion;0.0226886423313038!GO:0006733;oxidoreduction coenzyme metabolic process;0.022696346033668!GO:0032906;transforming growth factor-beta2 production;0.0231604165688853!GO:0032909;regulation of transforming growth factor-beta2 production;0.0231604165688853!GO:0009124;nucleoside monophosphate biosynthetic process;0.0237402996829519!GO:0009123;nucleoside monophosphate metabolic process;0.0237402996829519!GO:0007059;chromosome segregation;0.0243242195269672!GO:0042326;negative regulation of phosphorylation;0.0244635382570442!GO:0009451;RNA modification;0.0245141799304881!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0245894972797648!GO:0006376;mRNA splice site selection;0.0245894972797648!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0245894972797648!GO:0000209;protein polyubiquitination;0.0248265552113946!GO:0008168;methyltransferase activity;0.0251630135411173!GO:0006783;heme biosynthetic process;0.0251786037132841!GO:0048037;cofactor binding;0.0258665723335783!GO:0007021;tubulin folding;0.0261370685668663!GO:0004177;aminopeptidase activity;0.0263361912196213!GO:0044275;cellular carbohydrate catabolic process;0.0267481205925059!GO:0031124;mRNA 3'-end processing;0.0269623462903755!GO:0006338;chromatin remodeling;0.0269623462903755!GO:0008652;amino acid biosynthetic process;0.0271684700756332!GO:0007162;negative regulation of cell adhesion;0.0271783674415838!GO:0007346;regulation of progression through mitotic cell cycle;0.0273528510103708!GO:0006739;NADP metabolic process;0.0275334760905184!GO:0006767;water-soluble vitamin metabolic process;0.0280983704719889!GO:0030145;manganese ion binding;0.0290019149987603!GO:0050178;phenylpyruvate tautomerase activity;0.0290782595762657!GO:0048146;positive regulation of fibroblast proliferation;0.0293084976453777!GO:0030031;cell projection biogenesis;0.0294120518491676!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0296624837794746!GO:0031902;late endosome membrane;0.0296624837794746!GO:0005975;carbohydrate metabolic process;0.0306771456597609!GO:0045334;clathrin-coated endocytic vesicle;0.0306838682937964!GO:0008538;proteasome activator activity;0.0310441481570528!GO:0004527;exonuclease activity;0.0313881795255102!GO:0016407;acetyltransferase activity;0.0314882797939236!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0316247755763516!GO:0031575;G1/S transition checkpoint;0.0316346722317853!GO:0050811;GABA receptor binding;0.0316843528331272!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0322542503883156!GO:0010257;NADH dehydrogenase complex assembly;0.0322542503883156!GO:0033108;mitochondrial respiratory chain complex assembly;0.0322542503883156!GO:0008637;apoptotic mitochondrial changes;0.0322542503883156!GO:0030518;steroid hormone receptor signaling pathway;0.032762140590699!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0329376607164932!GO:0022415;viral reproductive process;0.033078760759353!GO:0045926;negative regulation of growth;0.0346892931496005!GO:0000096;sulfur amino acid metabolic process;0.035645288525913!GO:0033559;unsaturated fatty acid metabolic process;0.0357056808756294!GO:0006636;unsaturated fatty acid biosynthetic process;0.0357056808756294!GO:0009967;positive regulation of signal transduction;0.0357268782341577!GO:0043130;ubiquitin binding;0.0357471313057668!GO:0032182;small conjugating protein binding;0.0357471313057668!GO:0007034;vacuolar transport;0.0359386290775489!GO:0043065;positive regulation of apoptosis;0.0360578795519479!GO:0032984;macromolecular complex disassembly;0.0364292460634712!GO:0006672;ceramide metabolic process;0.0366505098902286!GO:0008320;protein transmembrane transporter activity;0.0367243962515932!GO:0005784;translocon complex;0.037575222057301!GO:0006378;mRNA polyadenylation;0.037575222057301!GO:0043624;cellular protein complex disassembly;0.0377130667084247!GO:0006275;regulation of DNA replication;0.0379750125673631!GO:0035267;NuA4 histone acetyltransferase complex;0.0380575663233903!GO:0031418;L-ascorbic acid binding;0.0381789058227315!GO:0005092;GDP-dissociation inhibitor activity;0.0382656526550696!GO:0035035;histone acetyltransferase binding;0.0383278377016003!GO:0046426;negative regulation of JAK-STAT cascade;0.0385511045368727!GO:0012506;vesicle membrane;0.0386576553457881!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0386831308342891!GO:0046128;purine ribonucleoside metabolic process;0.039702321182313!GO:0042278;purine nucleoside metabolic process;0.039702321182313!GO:0031371;ubiquitin conjugating enzyme complex;0.0399116045098328!GO:0006541;glutamine metabolic process;0.0399321296214246!GO:0031625;ubiquitin protein ligase binding;0.0399321296214246!GO:0009161;ribonucleoside monophosphate metabolic process;0.0399321296214246!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0399321296214246!GO:0006769;nicotinamide metabolic process;0.0401357865950799!GO:0006284;base-excision repair;0.0401860220489603!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0402861217331038!GO:0000922;spindle pole;0.0404875207240373!GO:0043086;negative regulation of catalytic activity;0.0407166275898591!GO:0006310;DNA recombination;0.0407434861171853!GO:0046870;cadmium ion binding;0.0407693413225886!GO:0051338;regulation of transferase activity;0.0407974818389971!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0416830358681102!GO:0009166;nucleotide catabolic process;0.0416830358681102!GO:0004518;nuclease activity;0.0425738303685529!GO:0022884;macromolecule transmembrane transporter activity;0.0427727347849959!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0427727347849959!GO:0045045;secretory pathway;0.0433555604071283!GO:0043068;positive regulation of programmed cell death;0.0440806803394355!GO:0030911;TPR domain binding;0.0441855356366686!GO:0047485;protein N-terminus binding;0.045688525434307!GO:0005096;GTPase activator activity;0.045688525434307!GO:0005669;transcription factor TFIID complex;0.0458197774041664!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0458197774041664!GO:0030100;regulation of endocytosis;0.0462757187326215!GO:0030508;thiol-disulfide exchange intermediate activity;0.0464781469880673!GO:0043189;H4/H2A histone acetyltransferase complex;0.0467887867467427!GO:0009081;branched chain family amino acid metabolic process;0.0472802312038269!GO:0003756;protein disulfide isomerase activity;0.0472802312038269!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0472802312038269!GO:0051059;NF-kappaB binding;0.0478297109951201!GO:0001953;negative regulation of cell-matrix adhesion;0.0482653701206004!GO:0006807;nitrogen compound metabolic process;0.0486792954661566!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0486877149712966!GO:0006518;peptide metabolic process;0.0487057336151734!GO:0005876;spindle microtubule;0.0489616520939244!GO:0043433;negative regulation of transcription factor activity;0.0494032732871609!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0494032732871609!GO:0045039;protein import into mitochondrial inner membrane;0.0494032732871609!GO:0008203;cholesterol metabolic process;0.0499774350244479 | |||
|sample_id=11529 | |sample_id=11529 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=NR3C1:1.86892604564;NR6A1:1.79041354617;PAX1,9:1.48274958819;T:1.4318264671;ZNF384:1.39995102882;ZIC1..3:1.26384909997;CRX:1.22680443898;NKX2-1,4:1.09401054256;FOX{I1,J2}:1.06426260366;GFI1:0.914822154509;PAX4:0.839839713807;EN1,2:0.838406130064;ONECUT1,2:0.793414983459;UFEwm:0.783824033001;TFAP4:0.777171293063;HSF1,2:0.764209134231;SOX2:0.753634424562;TLX1..3_NFIC{dimer}:0.747472573758;HOXA9_MEIS1:0.739025850968;HOX{A5,B5}:0.663664784777;PBX1:0.637780573544;GTF2A1,2:0.608721889462;GFI1B:0.608366872398;KLF4:0.602236738;TBP:0.594466247302;PAX5:0.594371299889;FOXQ1:0.579689932325;HOX{A4,D4}:0.565944047866;NANOG:0.541571117195;SOX17:0.536804747591;POU6F1:0.526593024447;NKX2-3_NKX2-5:0.506158408473;LMO2:0.505168662541;NKX3-2:0.49686897939;HNF4A_NR2F1,2:0.492271317098;ESRRA:0.487545903441;PAX8:0.48312594982;SRF:0.471071718303;ADNP_IRX_SIX_ZHX:0.468727075964;ZBTB6:0.464407173978;PAX6:0.458279768177;TEAD1:0.455964318881;POU5F1:0.453794168484;NFATC1..3:0.414765270032;SPZ1:0.408503086621;FOSL2:0.405045176378;IKZF2:0.401647566419;LHX3,4:0.37899220559;E2F1..5:0.374451889304;SOX{8,9,10}:0.372689794923;AIRE:0.360300272028;TEF:0.314423628761;HMX1:0.311860088468;GZF1:0.292179438064;EVI1:0.279591950059;MYB:0.250260516267;MYBL2:0.245461125494;CDC5L:0.229642532707;NKX6-1,2:0.225336721307;DBP:0.22148219973;GCM1,2:0.218071945137;PAX3,7:0.208328274635;MYOD1:0.202006360319;TFCP2:0.191423754483;NR1H4:0.190856778216;NFIL3:0.188787119992;TP53:0.184660264473;NKX2-2,8:0.181393091548;XCPE1{core}:0.179569559306;ZBTB16:0.174347876268;BACH2:0.162000329995;POU2F1..3:0.158210234802;HAND1,2:0.153859957031;YY1:0.153753714271;HOX{A6,A7,B6,B7}:0.15027540935;ZNF148:0.148622899207;HIF1A:0.146112250091;FOXL1:0.128207086558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.124617100156;RXR{A,B,G}:0.123721140382;LEF1_TCF7_TCF7L1,2:0.117250005638;CDX1,2,4:0.0892963262378;EBF1:0.0809616780684;ALX1:0.0806596806263;TAL1_TCF{3,4,12}:0.0724139513735;AR:0.0695074312321;POU1F1:0.0637672654031;OCT4_SOX2{dimer}:0.0515586620764;NFY{A,B,C}:0.0445869611387;NFE2L2:0.036857885142;STAT2,4,6:0.0311739207284;ARID5B:0.00415254270207;GATA4:-0.0162003203809;FOS_FOS{B,L1}_JUN{B,D}:-0.0205960982077;TFDP1:-0.021216700379;HMGA1,2:-0.0219271777048;RBPJ:-0.0244903072478;NFE2L1:-0.0274433735168;NKX3-1:-0.0344997138382;STAT5{A,B}:-0.0474435963066;GTF2I:-0.05449056013;RFX1:-0.0695811436325;PRRX1,2:-0.0909936272998;HNF1A:-0.092555056908;MTF1:-0.105328774503;NRF1:-0.12017024407;SNAI1..3:-0.133385094953;NFE2:-0.13466918385;NR5A1,2:-0.137014991046;RUNX1..3:-0.143862091098;PRDM1:-0.144135499212;JUN:-0.144246837303;ALX4:-0.150250672127;TOPORS:-0.161471172203;ZEB1:-0.171057567149;VSX1,2:-0.177213976841;GLI1..3:-0.182484573783;ZNF423:-0.205139281956;REST:-0.214261666333;FOXD3:-0.216774161987;POU3F1..4:-0.239837276188;NHLH1,2:-0.244803649562;GATA6:-0.246115858305;ZFP161:-0.249861889759;AHR_ARNT_ARNT2:-0.255933410907;CEBPA,B_DDIT3:-0.256546900551;ZNF143:-0.259305228693;MZF1:-0.265443311123;FOXP3:-0.282171558913;NFIX:-0.283827707605;HIC1:-0.285088267422;DMAP1_NCOR{1,2}_SMARC:-0.295150533923;ELF1,2,4:-0.312133557173;PAX2:-0.31381471994;ETS1,2:-0.317411235918;HLF:-0.322408032803;ZNF238:-0.338566593289;SP1:-0.340081385267;MEF2{A,B,C,D}:-0.347031797662;NFKB1_REL_RELA:-0.368389695882;PITX1..3:-0.376409823447;TFAP2{A,C}:-0.391581379456;PPARG:-0.408453910818;SOX5:-0.41563127325;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.423840221457;MYFfamily:-0.427313563814;CUX2:-0.441489674361;SPI1:-0.475349188591;FOXO1,3,4:-0.476327824542;RORA:-0.47735157386;IRF1,2:-0.483969108036;FOXP1:-0.488228533336;ATF6:-0.496411153315;XBP1:-0.500303449178;RXRA_VDR{dimer}:-0.508875224095;MAFB:-0.510313003535;TGIF1:-0.513317819486;RREB1:-0.515359722029;PATZ1:-0.516533530348;EGR1..3:-0.542327059017;EP300:-0.550431179325;SPIB:-0.550791076471;MAZ:-0.557797281355;MED-1{core}:-0.564305565315;HES1:-0.576862013795;TBX4,5:-0.588745958523;BREu{core}:-0.608334652028;bHLH_family:-0.617578738146;SMAD1..7,9:-0.617654999381;MTE{core}:-0.635121560106;IKZF1:-0.672362340873;ATF2:-0.678818058946;RFX2..5_RFXANK_RFXAP:-0.700813158663;TFAP2B:-0.754123515435;FOX{D1,D2}:-0.768790679378;BPTF:-0.776036089477;ELK1,4_GABP{A,B1}:-0.778354443031;FOX{F1,F2,J1}:-0.785474281916;FOXM1:-0.832876843825;TLX2:-0.84727540548;ESR1:-0.904502561153;FOXA2:-0.946092772001;NANOG{mouse}:-0.947783595774;ATF5_CREB3:-0.952420596793;HBP1_HMGB_SSRP1_UBTF:-0.95360688556;STAT1,3:-0.99315007734;IRF7:-1.00682083117;CREB1:-1.14323306294;PDX1:-1.15751120855;SREBF1,2:-1.19079471453;ATF4:-1.26254767089;FOXN1:-1.49097355588 | |top_motifs=NR3C1:1.86892604564;NR6A1:1.79041354617;PAX1,9:1.48274958819;T:1.4318264671;ZNF384:1.39995102882;ZIC1..3:1.26384909997;CRX:1.22680443898;NKX2-1,4:1.09401054256;FOX{I1,J2}:1.06426260366;GFI1:0.914822154509;PAX4:0.839839713807;EN1,2:0.838406130064;ONECUT1,2:0.793414983459;UFEwm:0.783824033001;TFAP4:0.777171293063;HSF1,2:0.764209134231;SOX2:0.753634424562;TLX1..3_NFIC{dimer}:0.747472573758;HOXA9_MEIS1:0.739025850968;HOX{A5,B5}:0.663664784777;PBX1:0.637780573544;GTF2A1,2:0.608721889462;GFI1B:0.608366872398;KLF4:0.602236738;TBP:0.594466247302;PAX5:0.594371299889;FOXQ1:0.579689932325;HOX{A4,D4}:0.565944047866;NANOG:0.541571117195;SOX17:0.536804747591;POU6F1:0.526593024447;NKX2-3_NKX2-5:0.506158408473;LMO2:0.505168662541;NKX3-2:0.49686897939;HNF4A_NR2F1,2:0.492271317098;ESRRA:0.487545903441;PAX8:0.48312594982;SRF:0.471071718303;ADNP_IRX_SIX_ZHX:0.468727075964;ZBTB6:0.464407173978;PAX6:0.458279768177;TEAD1:0.455964318881;POU5F1:0.453794168484;NFATC1..3:0.414765270032;SPZ1:0.408503086621;FOSL2:0.405045176378;IKZF2:0.401647566419;LHX3,4:0.37899220559;E2F1..5:0.374451889304;SOX{8,9,10}:0.372689794923;AIRE:0.360300272028;TEF:0.314423628761;HMX1:0.311860088468;GZF1:0.292179438064;EVI1:0.279591950059;MYB:0.250260516267;MYBL2:0.245461125494;CDC5L:0.229642532707;NKX6-1,2:0.225336721307;DBP:0.22148219973;GCM1,2:0.218071945137;PAX3,7:0.208328274635;MYOD1:0.202006360319;TFCP2:0.191423754483;NR1H4:0.190856778216;NFIL3:0.188787119992;TP53:0.184660264473;NKX2-2,8:0.181393091548;XCPE1{core}:0.179569559306;ZBTB16:0.174347876268;BACH2:0.162000329995;POU2F1..3:0.158210234802;HAND1,2:0.153859957031;YY1:0.153753714271;HOX{A6,A7,B6,B7}:0.15027540935;ZNF148:0.148622899207;HIF1A:0.146112250091;FOXL1:0.128207086558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.124617100156;RXR{A,B,G}:0.123721140382;LEF1_TCF7_TCF7L1,2:0.117250005638;CDX1,2,4:0.0892963262378;EBF1:0.0809616780684;ALX1:0.0806596806263;TAL1_TCF{3,4,12}:0.0724139513735;AR:0.0695074312321;POU1F1:0.0637672654031;OCT4_SOX2{dimer}:0.0515586620764;NFY{A,B,C}:0.0445869611387;NFE2L2:0.036857885142;STAT2,4,6:0.0311739207284;ARID5B:0.00415254270207;GATA4:-0.0162003203809;FOS_FOS{B,L1}_JUN{B,D}:-0.0205960982077;TFDP1:-0.021216700379;HMGA1,2:-0.0219271777048;RBPJ:-0.0244903072478;NFE2L1:-0.0274433735168;NKX3-1:-0.0344997138382;STAT5{A,B}:-0.0474435963066;GTF2I:-0.05449056013;RFX1:-0.0695811436325;PRRX1,2:-0.0909936272998;HNF1A:-0.092555056908;MTF1:-0.105328774503;NRF1:-0.12017024407;SNAI1..3:-0.133385094953;NFE2:-0.13466918385;NR5A1,2:-0.137014991046;RUNX1..3:-0.143862091098;PRDM1:-0.144135499212;JUN:-0.144246837303;ALX4:-0.150250672127;TOPORS:-0.161471172203;ZEB1:-0.171057567149;VSX1,2:-0.177213976841;GLI1..3:-0.182484573783;ZNF423:-0.205139281956;REST:-0.214261666333;FOXD3:-0.216774161987;POU3F1..4:-0.239837276188;NHLH1,2:-0.244803649562;GATA6:-0.246115858305;ZFP161:-0.249861889759;AHR_ARNT_ARNT2:-0.255933410907;CEBPA,B_DDIT3:-0.256546900551;ZNF143:-0.259305228693;MZF1:-0.265443311123;FOXP3:-0.282171558913;NFIX:-0.283827707605;HIC1:-0.285088267422;DMAP1_NCOR{1,2}_SMARC:-0.295150533923;ELF1,2,4:-0.312133557173;PAX2:-0.31381471994;ETS1,2:-0.317411235918;HLF:-0.322408032803;ZNF238:-0.338566593289;SP1:-0.340081385267;MEF2{A,B,C,D}:-0.347031797662;NFKB1_REL_RELA:-0.368389695882;PITX1..3:-0.376409823447;TFAP2{A,C}:-0.391581379456;PPARG:-0.408453910818;SOX5:-0.41563127325;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.423840221457;MYFfamily:-0.427313563814;CUX2:-0.441489674361;SPI1:-0.475349188591;FOXO1,3,4:-0.476327824542;RORA:-0.47735157386;IRF1,2:-0.483969108036;FOXP1:-0.488228533336;ATF6:-0.496411153315;XBP1:-0.500303449178;RXRA_VDR{dimer}:-0.508875224095;MAFB:-0.510313003535;TGIF1:-0.513317819486;RREB1:-0.515359722029;PATZ1:-0.516533530348;EGR1..3:-0.542327059017;EP300:-0.550431179325;SPIB:-0.550791076471;MAZ:-0.557797281355;MED-1{core}:-0.564305565315;HES1:-0.576862013795;TBX4,5:-0.588745958523;BREu{core}:-0.608334652028;bHLH_family:-0.617578738146;SMAD1..7,9:-0.617654999381;MTE{core}:-0.635121560106;IKZF1:-0.672362340873;ATF2:-0.678818058946;RFX2..5_RFXANK_RFXAP:-0.700813158663;TFAP2B:-0.754123515435;FOX{D1,D2}:-0.768790679378;BPTF:-0.776036089477;ELK1,4_GABP{A,B1}:-0.778354443031;FOX{F1,F2,J1}:-0.785474281916;FOXM1:-0.832876843825;TLX2:-0.84727540548;ESR1:-0.904502561153;FOXA2:-0.946092772001;NANOG{mouse}:-0.947783595774;ATF5_CREB3:-0.952420596793;HBP1_HMGB_SSRP1_UBTF:-0.95360688556;STAT1,3:-0.99315007734;IRF7:-1.00682083117;CREB1:-1.14323306294;PDX1:-1.15751120855;SREBF1,2:-1.19079471453;ATF4:-1.26254767089;FOXN1:-1.49097355588 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11529-119I8;search_select_hide=table117:FF:11529-119I8 | |||
}} | }} | ||
Latest revision as of 18:06, 4 June 2020
| Name: | Lens Epithelial Cells, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12342 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12342
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12342
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.286 |
| 10 | 10 | 0.548 |
| 100 | 100 | 0.309 |
| 101 | 101 | 0.688 |
| 102 | 102 | 0.964 |
| 103 | 103 | 0.209 |
| 104 | 104 | 0.578 |
| 105 | 105 | 0.894 |
| 106 | 106 | 0.201 |
| 107 | 107 | 0.0468 |
| 108 | 108 | 0.557 |
| 109 | 109 | 0.195 |
| 11 | 11 | 0.148 |
| 110 | 110 | 0.0645 |
| 111 | 111 | 0.44 |
| 112 | 112 | 0.85 |
| 113 | 113 | 0.805 |
| 114 | 114 | 0.143 |
| 115 | 115 | 0.478 |
| 116 | 116 | 0.16 |
| 117 | 117 | 0.836 |
| 118 | 118 | 0.65 |
| 119 | 119 | 0.137 |
| 12 | 12 | 0.546 |
| 120 | 120 | 0.212 |
| 121 | 121 | 0.898 |
| 122 | 122 | 0.975 |
| 123 | 123 | 0.344 |
| 124 | 124 | 0.0648 |
| 125 | 125 | 0.193 |
| 126 | 126 | 0.449 |
| 127 | 127 | 0.422 |
| 128 | 128 | 0.463 |
| 129 | 129 | 0.0573 |
| 13 | 13 | 0.112 |
| 130 | 130 | 0.506 |
| 131 | 131 | 0.0837 |
| 132 | 132 | 0.636 |
| 133 | 133 | 0.556 |
| 134 | 134 | 0.899 |
| 135 | 135 | 0.841 |
| 136 | 136 | 0.309 |
| 137 | 137 | 0.382 |
| 138 | 138 | 0.326 |
| 139 | 139 | 0.249 |
| 14 | 14 | 0.827 |
| 140 | 140 | 0.872 |
| 141 | 141 | 0.598 |
| 142 | 142 | 0.449 |
| 143 | 143 | 0.0815 |
| 144 | 144 | 0.665 |
| 145 | 145 | 0.124 |
| 146 | 146 | 0.358 |
| 147 | 147 | 0.104 |
| 148 | 148 | 0.699 |
| 149 | 149 | 0.392 |
| 15 | 15 | 0.14 |
| 150 | 150 | 0.416 |
| 151 | 151 | 0.682 |
| 152 | 152 | 0.901 |
| 153 | 153 | 0.893 |
| 154 | 154 | 0.856 |
| 155 | 155 | 0.118 |
| 156 | 156 | 0.61 |
| 157 | 157 | 0.649 |
| 158 | 158 | 0.0807 |
| 159 | 159 | 0.454 |
| 16 | 16 | 0.167 |
| 160 | 160 | 0.00589 |
| 161 | 161 | 0.783 |
| 162 | 162 | 0.0582 |
| 163 | 163 | 0.467 |
| 164 | 164 | 0.919 |
| 165 | 165 | 0.782 |
| 166 | 166 | 0.653 |
| 167 | 167 | 0.621 |
| 168 | 168 | 0.163 |
| 169 | 169 | 0.0701 |
| 17 | 17 | 0.379 |
| 18 | 18 | 0.45 |
| 19 | 19 | 0.344 |
| 2 | 2 | 0.512 |
| 20 | 20 | 0.358 |
| 21 | 21 | 0.264 |
| 22 | 22 | 0.572 |
| 23 | 23 | 0.155 |
| 24 | 24 | 0.236 |
| 25 | 25 | 0.617 |
| 26 | 26 | 0.327 |
| 27 | 27 | 0.214 |
| 28 | 28 | 0.82 |
| 29 | 29 | 0.473 |
| 3 | 3 | 0.237 |
| 30 | 30 | 0.511 |
| 31 | 31 | 0.639 |
| 32 | 32 | 0.0259 |
| 33 | 33 | 0.513 |
| 34 | 34 | 0.64 |
| 35 | 35 | 0.297 |
| 36 | 36 | 0.493 |
| 37 | 37 | 0.271 |
| 38 | 38 | 0.661 |
| 39 | 39 | 0.442 |
| 4 | 4 | 0.893 |
| 40 | 40 | 0.121 |
| 41 | 41 | 0.851 |
| 42 | 42 | 0.489 |
| 43 | 43 | 0.386 |
| 44 | 44 | 0.203 |
| 45 | 45 | 0.731 |
| 46 | 46 | 0.156 |
| 47 | 47 | 0.227 |
| 48 | 48 | 0.282 |
| 49 | 49 | 0.436 |
| 5 | 5 | 0.438 |
| 50 | 50 | 0.9 |
| 51 | 51 | 0.387 |
| 52 | 52 | 0.734 |
| 53 | 53 | 0.667 |
| 54 | 54 | 0.913 |
| 55 | 55 | 0.936 |
| 56 | 56 | 0.694 |
| 57 | 57 | 0.332 |
| 58 | 58 | 0.805 |
| 59 | 59 | 0.168 |
| 6 | 6 | 0.828 |
| 60 | 60 | 0.715 |
| 61 | 61 | 0.991 |
| 62 | 62 | 0.278 |
| 63 | 63 | 0.185 |
| 64 | 64 | 0.197 |
| 65 | 65 | 0.257 |
| 66 | 66 | 0.25 |
| 67 | 67 | 0.176 |
| 68 | 68 | 0.487 |
| 69 | 69 | 0.0661 |
| 7 | 7 | 0.182 |
| 70 | 70 | 0.134 |
| 71 | 71 | 0.0948 |
| 72 | 72 | 0.871 |
| 73 | 73 | 0.398 |
| 74 | 74 | 0.639 |
| 75 | 75 | 0.876 |
| 76 | 76 | 0.226 |
| 77 | 77 | 0.109 |
| 78 | 78 | 0.486 |
| 79 | 79 | 0.106 |
| 8 | 8 | 0.0138 |
| 80 | 80 | 0.671 |
| 81 | 81 | 0.398 |
| 82 | 82 | 0.662 |
| 83 | 83 | 0.088 |
| 84 | 84 | 0.748 |
| 85 | 85 | 0.305 |
| 86 | 86 | 0.329 |
| 87 | 87 | 0.695 |
| 88 | 88 | 0.854 |
| 89 | 89 | 0.0187 |
| 9 | 9 | 0.478 |
| 90 | 90 | 0.722 |
| 91 | 91 | 0.064 |
| 92 | 92 | 0.611 |
| 93 | 93 | 0.472 |
| 94 | 94 | 0.0952 |
| 95 | 95 | 0.998 |
| 96 | 96 | 0.295 |
| 97 | 97 | 0.6 |
| 98 | 98 | 0.978 |
| 99 | 99 | 0.0147 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12342
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000306 (crystallin accumulating cell)
0002222 (vertebrate lens cell)
0002224 (lens epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0010077 (cuboidal epithelium)
0005389 (transparent eye structure)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0000484 (simple cuboidal epithelium)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000965 (lens of camera-type eye)
0001803 (epithelium of lens)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000085 (human lens epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
