FF:11432-118H1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005106 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008470;DRR009342;DRZ000767;DRZ002152;DRZ012117;DRZ013502 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000168 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor3.CNhs11309.11432-118H1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor3.CNhs11309.11432-118H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor3.CNhs11309.11432-118H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor3.CNhs11309.11432-118H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor3.CNhs11309.11432-118H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11432-118H1 | |id=FF:11432-118H1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000168 | ||
|is_obsolete= | |||
|library_id=CNhs11309 | |||
|library_id_phase_based=2:CNhs11309 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11432 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11432 | |||
|name=Smooth Muscle Cells - Aortic, donor3 | |name=Smooth Muscle Cells - Aortic, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11309,LSID767,release009,COMPLETED | |profile_hcage=CNhs11309,LSID767,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA354-R10a | |rna_catalog_number=CA354-R10a | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=54 | |sample_age=54 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.47493167100806e-217!GO:0005737;cytoplasm;1.35131054723791e-185!GO:0043226;organelle;1.24165602589967e-148!GO:0043229;intracellular organelle;2.04971718721856e-148!GO:0043231;intracellular membrane-bound organelle;2.29523062884695e-146!GO:0043227;membrane-bound organelle;5.03872166044829e-146!GO:0044444;cytoplasmic part;3.89411696246286e-139!GO:0044422;organelle part;1.00318936274236e-127!GO:0044446;intracellular organelle part;2.69041765736232e-126!GO:0032991;macromolecular complex;3.56469926527211e-84!GO:0005515;protein binding;5.32244372823555e-76!GO:0030529;ribonucleoprotein complex;4.99936986396301e-72!GO:0044237;cellular metabolic process;8.50987997682365e-71!GO:0044238;primary metabolic process;3.1108448985021e-70!GO:0005739;mitochondrion;4.03791831939902e-63!GO:0043170;macromolecule metabolic process;3.39306966733317e-62!GO:0043233;organelle lumen;7.02190350291574e-60!GO:0031974;membrane-enclosed lumen;7.02190350291574e-60!GO:0031090;organelle membrane;4.387413004621e-54!GO:0044428;nuclear part;2.60089609067926e-53!GO:0003723;RNA binding;2.56514404706627e-51!GO:0019538;protein metabolic process;2.56514404706627e-51!GO:0006412;translation;2.28804272181332e-49!GO:0005840;ribosome;2.96431548205255e-49!GO:0044260;cellular macromolecule metabolic process;3.17067336629125e-46!GO:0044267;cellular protein metabolic process;1.29787371774865e-45!GO:0009058;biosynthetic process;1.72019946576529e-45!GO:0003735;structural constituent of ribosome;6.53283403214787e-45!GO:0043234;protein complex;3.97642393885483e-43!GO:0044429;mitochondrial part;8.59860850626573e-43!GO:0016043;cellular component organization and biogenesis;1.52582783456066e-42!GO:0009059;macromolecule biosynthetic process;9.07883201073617e-42!GO:0015031;protein transport;1.43993609655224e-41!GO:0005634;nucleus;2.44801637244376e-41!GO:0044249;cellular biosynthetic process;7.5801088397931e-41!GO:0005829;cytosol;9.5457409582534e-41!GO:0033036;macromolecule localization;1.64704633575346e-40!GO:0045184;establishment of protein localization;7.13488328948712e-39!GO:0033279;ribosomal subunit;1.89530298629277e-38!GO:0008104;protein localization;5.08968318410191e-38!GO:0031967;organelle envelope;1.12050815681585e-37!GO:0031975;envelope;2.50350362845964e-37!GO:0006396;RNA processing;2.73496514861451e-34!GO:0046907;intracellular transport;1.0501086035011e-32!GO:0031981;nuclear lumen;2.94746246796884e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.89412701114704e-29!GO:0006886;intracellular protein transport;3.96940016162508e-28!GO:0005740;mitochondrial envelope;7.8958346807352e-28!GO:0065003;macromolecular complex assembly;1.2594583876957e-27!GO:0043283;biopolymer metabolic process;5.00089549061503e-27!GO:0031966;mitochondrial membrane;2.97009001142086e-26!GO:0016071;mRNA metabolic process;3.11871769529603e-26!GO:0006996;organelle organization and biogenesis;3.99245395684845e-26!GO:0043228;non-membrane-bound organelle;5.47465885022026e-26!GO:0043232;intracellular non-membrane-bound organelle;5.47465885022026e-26!GO:0022607;cellular component assembly;3.67734964034834e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.56177491065928e-24!GO:0008380;RNA splicing;4.045289440247e-24!GO:0044445;cytosolic part;7.3152740530315e-24!GO:0012505;endomembrane system;1.31642991349349e-23!GO:0019866;organelle inner membrane;1.31642991349349e-23!GO:0005783;endoplasmic reticulum;2.26106479205825e-23!GO:0010467;gene expression;6.42091769809882e-23!GO:0006397;mRNA processing;1.04035871612706e-22!GO:0005743;mitochondrial inner membrane;1.79664331371551e-22!GO:0006119;oxidative phosphorylation;1.07023326322325e-21!GO:0051641;cellular localization;5.65902514985331e-21!GO:0051649;establishment of cellular localization;5.94057289106828e-21!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.3238865215223e-21!GO:0015934;large ribosomal subunit;4.00420776644116e-20!GO:0016462;pyrophosphatase activity;6.58224251153908e-20!GO:0006457;protein folding;6.8129644756125e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.3401613124601e-20!GO:0017111;nucleoside-triphosphatase activity;1.11763936544988e-19!GO:0044455;mitochondrial membrane part;1.18316765622155e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.2294461104565e-19!GO:0015935;small ribosomal subunit;2.72739545253582e-19!GO:0044432;endoplasmic reticulum part;2.77920017292853e-19!GO:0005794;Golgi apparatus;3.06025165603411e-19!GO:0006259;DNA metabolic process;3.06025165603411e-19!GO:0005654;nucleoplasm;3.66533730664005e-19!GO:0048770;pigment granule;2.69287173164597e-18!GO:0042470;melanosome;2.69287173164597e-18!GO:0000166;nucleotide binding;2.89629490625185e-18!GO:0031980;mitochondrial lumen;7.36637026377152e-18!GO:0005759;mitochondrial matrix;7.36637026377152e-18!GO:0005681;spliceosome;4.21956440123214e-17!GO:0005746;mitochondrial respiratory chain;6.80470454381456e-17!GO:0016874;ligase activity;2.18578538120737e-16!GO:0006512;ubiquitin cycle;4.49491785185315e-16!GO:0051186;cofactor metabolic process;1.59842418034354e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.64038059868425e-15!GO:0000502;proteasome complex (sensu Eukaryota);4.2026504602953e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.2026504602953e-15!GO:0044451;nucleoplasm part;5.44459197414022e-15!GO:0044265;cellular macromolecule catabolic process;1.00166011070087e-14!GO:0007049;cell cycle;1.04375231701905e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.07572770596887e-14!GO:0022618;protein-RNA complex assembly;1.29332445528001e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.47467027168973e-14!GO:0003954;NADH dehydrogenase activity;1.47467027168973e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.47467027168973e-14!GO:0051082;unfolded protein binding;1.59747472758516e-14!GO:0009057;macromolecule catabolic process;1.76371227637028e-14!GO:0043285;biopolymer catabolic process;1.9244885355982e-14!GO:0006605;protein targeting;1.99942942122403e-14!GO:0008135;translation factor activity, nucleic acid binding;4.5713103408306e-14!GO:0005730;nucleolus;5.28740368597273e-14!GO:0008134;transcription factor binding;5.47010355530936e-14!GO:0017076;purine nucleotide binding;7.85150639603227e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.21811209862335e-14!GO:0048193;Golgi vesicle transport;8.21811209862335e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;9.92096934615658e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.10860226075725e-13!GO:0032553;ribonucleotide binding;1.28656102718579e-13!GO:0032555;purine ribonucleotide binding;1.28656102718579e-13!GO:0019941;modification-dependent protein catabolic process;1.83049493520281e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.83049493520281e-13!GO:0044257;cellular protein catabolic process;2.25205258352102e-13!GO:0044248;cellular catabolic process;2.63835177066335e-13!GO:0005761;mitochondrial ribosome;3.32424959289971e-13!GO:0000313;organellar ribosome;3.32424959289971e-13!GO:0030163;protein catabolic process;3.32932231843614e-13!GO:0006511;ubiquitin-dependent protein catabolic process;3.36816369137237e-13!GO:0005789;endoplasmic reticulum membrane;3.62722990700492e-13!GO:0016192;vesicle-mediated transport;7.10510816179136e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.20892143714562e-13!GO:0045271;respiratory chain complex I;8.20892143714562e-13!GO:0005747;mitochondrial respiratory chain complex I;8.20892143714562e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.08506116210779e-12!GO:0042773;ATP synthesis coupled electron transport;1.08506116210779e-12!GO:0005793;ER-Golgi intermediate compartment;1.49654794572793e-12!GO:0009055;electron carrier activity;2.57092817187955e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.76749890570108e-12!GO:0006732;coenzyme metabolic process;6.88964633020684e-12!GO:0043412;biopolymer modification;1.18113832146508e-11!GO:0003743;translation initiation factor activity;3.2932358769958e-11!GO:0012501;programmed cell death;3.42747776581479e-11!GO:0022402;cell cycle process;4.11634025788132e-11!GO:0009259;ribonucleotide metabolic process;6.42300629758918e-11!GO:0006915;apoptosis;6.60877647639316e-11!GO:0006464;protein modification process;7.55870206148129e-11!GO:0005524;ATP binding;7.55870206148129e-11!GO:0005635;nuclear envelope;8.46049043385252e-11!GO:0016491;oxidoreductase activity;1.0090803089513e-10!GO:0030554;adenyl nucleotide binding;1.4572982296339e-10!GO:0000278;mitotic cell cycle;1.4572982296339e-10!GO:0032559;adenyl ribonucleotide binding;1.77930045601308e-10!GO:0009150;purine ribonucleotide metabolic process;1.8525194882665e-10!GO:0006163;purine nucleotide metabolic process;2.00809573789363e-10!GO:0006913;nucleocytoplasmic transport;2.55023605382799e-10!GO:0042254;ribosome biogenesis and assembly;3.04370677345408e-10!GO:0008219;cell death;3.91060249494222e-10!GO:0016265;death;3.91060249494222e-10!GO:0031965;nuclear membrane;3.93242316043765e-10!GO:0051169;nuclear transport;5.00125648996986e-10!GO:0009152;purine ribonucleotide biosynthetic process;7.16225659393181e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.24521963090444e-10!GO:0000375;RNA splicing, via transesterification reactions;7.24521963090444e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.24521963090444e-10!GO:0006164;purine nucleotide biosynthetic process;8.23834968174528e-10!GO:0009260;ribonucleotide biosynthetic process;8.9499820345807e-10!GO:0048523;negative regulation of cellular process;1.01025026900308e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.19500579431437e-09!GO:0006413;translational initiation;1.27362030135222e-09!GO:0044453;nuclear membrane part;1.32720846068838e-09!GO:0008639;small protein conjugating enzyme activity;1.38864834113224e-09!GO:0016887;ATPase activity;1.4343244050231e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.74373392343892e-09!GO:0009141;nucleoside triphosphate metabolic process;2.85564162709517e-09!GO:0006974;response to DNA damage stimulus;2.88176184514062e-09!GO:0004842;ubiquitin-protein ligase activity;3.02790406369152e-09!GO:0003712;transcription cofactor activity;3.23556930854509e-09!GO:0042623;ATPase activity, coupled;3.27652895640871e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.75841207789001e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.75841207789001e-09!GO:0044431;Golgi apparatus part;4.954093496133e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.73643436821894e-09!GO:0019787;small conjugating protein ligase activity;8.33025162295432e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.33806052397373e-09!GO:0008565;protein transporter activity;1.19595955363336e-08!GO:0017038;protein import;1.23088067346263e-08!GO:0030120;vesicle coat;1.24969945814981e-08!GO:0030662;coated vesicle membrane;1.24969945814981e-08!GO:0005788;endoplasmic reticulum lumen;1.27162245082838e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.31480581285971e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.31480581285971e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.57680675467072e-08!GO:0006446;regulation of translational initiation;1.60333896540321e-08!GO:0003924;GTPase activity;1.76639577194956e-08!GO:0043687;post-translational protein modification;1.90335384607298e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.90335384607298e-08!GO:0048519;negative regulation of biological process;1.93478189658861e-08!GO:0005768;endosome;2.12833097382749e-08!GO:0015986;ATP synthesis coupled proton transport;2.49231515191586e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.49231515191586e-08!GO:0009056;catabolic process;2.50541474434068e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.84307991186268e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.84307991186268e-08!GO:0003676;nucleic acid binding;3.0509630374438e-08!GO:0006399;tRNA metabolic process;3.75700623065673e-08!GO:0006461;protein complex assembly;4.09714585609993e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;4.21137189931845e-08!GO:0046034;ATP metabolic process;4.4303099602946e-08!GO:0016881;acid-amino acid ligase activity;4.56910324798339e-08!GO:0051726;regulation of cell cycle;4.56910324798339e-08!GO:0005643;nuclear pore;5.45061132408171e-08!GO:0043067;regulation of programmed cell death;5.52530905937425e-08!GO:0009719;response to endogenous stimulus;6.31397335922581e-08!GO:0000074;regulation of progression through cell cycle;6.51591666476506e-08!GO:0042981;regulation of apoptosis;6.70839301498376e-08!GO:0051276;chromosome organization and biogenesis;6.80764226709132e-08!GO:0019829;cation-transporting ATPase activity;6.9589398058706e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.06094890958738e-08!GO:0009060;aerobic respiration;8.97680771665921e-08!GO:0006281;DNA repair;9.46005855209609e-08!GO:0016604;nuclear body;9.7213281680464e-08!GO:0065004;protein-DNA complex assembly;1.00669221420619e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.07999498221322e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.07999498221322e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.07999498221322e-07!GO:0048475;coated membrane;1.1197527138577e-07!GO:0030117;membrane coat;1.1197527138577e-07!GO:0006323;DNA packaging;1.2242267138014e-07!GO:0065002;intracellular protein transport across a membrane;1.23748894256538e-07!GO:0006260;DNA replication;1.51205467319925e-07!GO:0051246;regulation of protein metabolic process;1.75519595550102e-07!GO:0009117;nucleotide metabolic process;1.78701473462603e-07!GO:0051188;cofactor biosynthetic process;1.87874873383112e-07!GO:0006916;anti-apoptosis;2.12264959161571e-07!GO:0043038;amino acid activation;2.16567723170049e-07!GO:0006418;tRNA aminoacylation for protein translation;2.16567723170049e-07!GO:0043039;tRNA aminoacylation;2.16567723170049e-07!GO:0045333;cellular respiration;2.70758933002959e-07!GO:0043069;negative regulation of programmed cell death;2.72613459947158e-07!GO:0006091;generation of precursor metabolites and energy;2.72803596332525e-07!GO:0000139;Golgi membrane;2.785683715553e-07!GO:0006754;ATP biosynthetic process;2.94117016150911e-07!GO:0006753;nucleoside phosphate metabolic process;2.94117016150911e-07!GO:0016787;hydrolase activity;3.04292546937707e-07!GO:0000087;M phase of mitotic cell cycle;3.0462635383232e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.41301165292303e-07!GO:0046930;pore complex;3.8517410928278e-07!GO:0007067;mitosis;4.01417508772702e-07!GO:0006333;chromatin assembly or disassembly;4.52969592734052e-07!GO:0005694;chromosome;4.75946206023177e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.75946206023177e-07!GO:0043066;negative regulation of apoptosis;5.29059044022407e-07!GO:0004386;helicase activity;6.23191289651955e-07!GO:0008026;ATP-dependent helicase activity;8.97892249419833e-07!GO:0006334;nucleosome assembly;9.82671611001006e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.45927747993753e-06!GO:0006364;rRNA processing;1.48300483999007e-06!GO:0044427;chromosomal part;1.85019598137251e-06!GO:0006366;transcription from RNA polymerase II promoter;1.85735110871683e-06!GO:0031988;membrane-bound vesicle;1.88561099564824e-06!GO:0016740;transferase activity;2.17295839369179e-06!GO:0016072;rRNA metabolic process;2.20827882727026e-06!GO:0022403;cell cycle phase;2.25546522453945e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.39811774316157e-06!GO:0044440;endosomal part;2.39811774316157e-06!GO:0010008;endosome membrane;2.39811774316157e-06!GO:0051187;cofactor catabolic process;3.00591141972799e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.06410095390717e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.10699368507899e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.24379592703096e-06!GO:0031497;chromatin assembly;3.45944579839039e-06!GO:0016070;RNA metabolic process;3.49185840471466e-06!GO:0031252;leading edge;3.90460534118329e-06!GO:0048522;positive regulation of cellular process;3.9747339578323e-06!GO:0051170;nuclear import;4.53466961650179e-06!GO:0006606;protein import into nucleus;4.55493395756852e-06!GO:0006099;tricarboxylic acid cycle;4.85817725312039e-06!GO:0046356;acetyl-CoA catabolic process;4.85817725312039e-06!GO:0008654;phospholipid biosynthetic process;5.10531366941847e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.17504051695548e-06!GO:0006403;RNA localization;5.32231244697623e-06!GO:0007005;mitochondrion organization and biogenesis;5.48658893667351e-06!GO:0016607;nuclear speck;5.70944696267483e-06!GO:0050657;nucleic acid transport;6.18069010580685e-06!GO:0051236;establishment of RNA localization;6.18069010580685e-06!GO:0050658;RNA transport;6.18069010580685e-06!GO:0045259;proton-transporting ATP synthase complex;6.21201354484859e-06!GO:0016853;isomerase activity;6.22465208374855e-06!GO:0005770;late endosome;7.04565788432745e-06!GO:0051301;cell division;7.04565788432745e-06!GO:0005798;Golgi-associated vesicle;7.32595510480109e-06!GO:0005773;vacuole;8.14249628674616e-06!GO:0006084;acetyl-CoA metabolic process;8.43948233916118e-06!GO:0032446;protein modification by small protein conjugation;8.54023166097004e-06!GO:0031410;cytoplasmic vesicle;9.76476872197514e-06!GO:0016567;protein ubiquitination;9.93985161160237e-06!GO:0031982;vesicle;1.02854016068399e-05!GO:0000785;chromatin;1.05154987992759e-05!GO:0009109;coenzyme catabolic process;1.09457828008712e-05!GO:0009108;coenzyme biosynthetic process;1.22514242520971e-05!GO:0005525;GTP binding;1.37218382838228e-05!GO:0031968;organelle outer membrane;1.42440516993082e-05!GO:0019867;outer membrane;1.43226498092226e-05!GO:0015630;microtubule cytoskeleton;1.50868012120471e-05!GO:0006752;group transfer coenzyme metabolic process;1.56323297621945e-05!GO:0000151;ubiquitin ligase complex;1.6226282006845e-05!GO:0005762;mitochondrial large ribosomal subunit;1.70805931217408e-05!GO:0000315;organellar large ribosomal subunit;1.70805931217408e-05!GO:0003714;transcription corepressor activity;1.84045634666918e-05!GO:0016779;nucleotidyltransferase activity;1.95391657158867e-05!GO:0003697;single-stranded DNA binding;2.09749721995385e-05!GO:0045454;cell redox homeostasis;2.6665736302656e-05!GO:0044262;cellular carbohydrate metabolic process;2.6665736302656e-05!GO:0051789;response to protein stimulus;2.87447589867068e-05!GO:0006986;response to unfolded protein;2.87447589867068e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.93554108633643e-05!GO:0004298;threonine endopeptidase activity;2.93554108633643e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.30736066931336e-05!GO:0005905;coated pit;4.56679490573438e-05!GO:0006613;cotranslational protein targeting to membrane;4.88984654848359e-05!GO:0030867;rough endoplasmic reticulum membrane;5.26016108362693e-05!GO:0019843;rRNA binding;5.31811681285405e-05!GO:0005667;transcription factor complex;5.47286503451311e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.49412882906338e-05!GO:0005741;mitochondrial outer membrane;6.67051788769261e-05!GO:0016859;cis-trans isomerase activity;6.94828766750451e-05!GO:0032561;guanyl ribonucleotide binding;7.15533958505457e-05!GO:0019001;guanyl nucleotide binding;7.15533958505457e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.76914714240601e-05!GO:0031324;negative regulation of cellular metabolic process;7.85669726471132e-05!GO:0005769;early endosome;7.85669726471132e-05!GO:0043623;cellular protein complex assembly;8.05568776550597e-05!GO:0003724;RNA helicase activity;8.2475641958538e-05!GO:0006793;phosphorus metabolic process;9.04781010510352e-05!GO:0006796;phosphate metabolic process;9.04781010510352e-05!GO:0065009;regulation of a molecular function;9.42735656561859e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.46233996794963e-05!GO:0016563;transcription activator activity;0.000100979720595424!GO:0000245;spliceosome assembly;0.000103302672251569!GO:0000323;lytic vacuole;0.000103363423882552!GO:0005764;lysosome;0.000103363423882552!GO:0043566;structure-specific DNA binding;0.000105385756541363!GO:0045786;negative regulation of progression through cell cycle;0.000109801001121654!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000113371201642364!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000120392027227479!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000125721674462426!GO:0003713;transcription coactivator activity;0.000126472807727173!GO:0051028;mRNA transport;0.000129083829200709!GO:0005813;centrosome;0.000140546670838795!GO:0000279;M phase;0.000145553915564648!GO:0030029;actin filament-based process;0.000200506658397717!GO:0005048;signal sequence binding;0.000223049867010226!GO:0016310;phosphorylation;0.000235036928799963!GO:0005815;microtubule organizing center;0.000247421802143566!GO:0016564;transcription repressor activity;0.000269771477570501!GO:0009165;nucleotide biosynthetic process;0.000275079083982398!GO:0016044;membrane organization and biogenesis;0.000296231848974106!GO:0050794;regulation of cellular process;0.000354959717209937!GO:0046474;glycerophospholipid biosynthetic process;0.000366590090391744!GO:0007010;cytoskeleton organization and biogenesis;0.000377791102952034!GO:0048518;positive regulation of biological process;0.000381772957756775!GO:0005885;Arp2/3 protein complex;0.000401845714761624!GO:0004576;oligosaccharyl transferase activity;0.000401845714761624!GO:0009892;negative regulation of metabolic process;0.000404017591346399!GO:0000786;nucleosome;0.000406089684432094!GO:0007264;small GTPase mediated signal transduction;0.000422015906582538!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000423787412793733!GO:0008361;regulation of cell size;0.000424797381260669!GO:0008250;oligosaccharyl transferase complex;0.000450002107321713!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000450393280116395!GO:0015399;primary active transmembrane transporter activity;0.000450393280116395!GO:0006950;response to stress;0.000460640281387014!GO:0019899;enzyme binding;0.000513573025171457!GO:0030663;COPI coated vesicle membrane;0.000516641133313065!GO:0030126;COPI vesicle coat;0.000516641133313065!GO:0016049;cell growth;0.000543327125480304!GO:0030176;integral to endoplasmic reticulum membrane;0.000548555431482522!GO:0006414;translational elongation;0.000548731373352432!GO:0003899;DNA-directed RNA polymerase activity;0.000560503936326267!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000576185707668907!GO:0008047;enzyme activator activity;0.000613283987446003!GO:0030133;transport vesicle;0.00061718757993392!GO:0007243;protein kinase cascade;0.00061718757993392!GO:0046467;membrane lipid biosynthetic process;0.000617405595358568!GO:0043284;biopolymer biosynthetic process;0.000639868474652781!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000658846172375025!GO:0042802;identical protein binding;0.000667060949557302!GO:0051329;interphase of mitotic cell cycle;0.000669212861359231!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000685007301975714!GO:0000314;organellar small ribosomal subunit;0.000701598927872867!GO:0005763;mitochondrial small ribosomal subunit;0.000701598927872867!GO:0005819;spindle;0.000702509272860887!GO:0051920;peroxiredoxin activity;0.000858522598096999!GO:0043021;ribonucleoprotein binding;0.000867832024804208!GO:0030137;COPI-coated vesicle;0.000876997238077701!GO:0001558;regulation of cell growth;0.000893500462776619!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000970985938066009!GO:0031072;heat shock protein binding;0.000986907887798597!GO:0016568;chromatin modification;0.00104908349027764!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00109346654761861!GO:0006082;organic acid metabolic process;0.0011050524827479!GO:0006612;protein targeting to membrane;0.00111173479818101!GO:0019752;carboxylic acid metabolic process;0.00115091651395307!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00123081888506096!GO:0030658;transport vesicle membrane;0.00134530287229191!GO:0008092;cytoskeletal protein binding;0.00137496893342906!GO:0018196;peptidyl-asparagine modification;0.00140157903367824!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00140157903367824!GO:0006118;electron transport;0.00153271153959954!GO:0051168;nuclear export;0.00157915084540574!GO:0051427;hormone receptor binding;0.00166543361540795!GO:0048468;cell development;0.00167004082343397!GO:0008186;RNA-dependent ATPase activity;0.00167004082343397!GO:0048487;beta-tubulin binding;0.00175043564788882!GO:0051325;interphase;0.00175792578582974!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00182117960791432!GO:0015992;proton transport;0.00186042851243158!GO:0000059;protein import into nucleus, docking;0.00186477603844887!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0018794302392824!GO:0006818;hydrogen transport;0.00192344559355163!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00192406927088346!GO:0008610;lipid biosynthetic process;0.00197395101247177!GO:0030659;cytoplasmic vesicle membrane;0.00197703503541236!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00203800131025836!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00203800131025836!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00203800131025836!GO:0008632;apoptotic program;0.00204137668128227!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00212484743425602!GO:0030118;clathrin coat;0.00215087947889976!GO:0043681;protein import into mitochondrion;0.00221943764788971!GO:0007006;mitochondrial membrane organization and biogenesis;0.0023505951358709!GO:0030132;clathrin coat of coated pit;0.00251914208687555!GO:0045941;positive regulation of transcription;0.00254676157076004!GO:0043492;ATPase activity, coupled to movement of substances;0.00263576943436981!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00273652904458946!GO:0046489;phosphoinositide biosynthetic process;0.00292789338380038!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0030168194720603!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00306720915421311!GO:0035257;nuclear hormone receptor binding;0.00309107465811527!GO:0006740;NADPH regeneration;0.00325180969202131!GO:0006098;pentose-phosphate shunt;0.00325180969202131!GO:0005774;vacuolar membrane;0.00341850178930949!GO:0030027;lamellipodium;0.00353659892054614!GO:0005791;rough endoplasmic reticulum;0.003553897853406!GO:0030660;Golgi-associated vesicle membrane;0.00373310186787707!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00377731592188925!GO:0006891;intra-Golgi vesicle-mediated transport;0.00381026579586011!GO:0004004;ATP-dependent RNA helicase activity;0.00402771631260642!GO:0006261;DNA-dependent DNA replication;0.00411945678677771!GO:0046483;heterocycle metabolic process;0.00419535946815419!GO:0017166;vinculin binding;0.00430976239480549!GO:0044433;cytoplasmic vesicle part;0.00430976239480549!GO:0006626;protein targeting to mitochondrion;0.00430976239480549!GO:0006007;glucose catabolic process;0.00432087847355409!GO:0050790;regulation of catalytic activity;0.00438473196420699!GO:0006979;response to oxidative stress;0.00443219122478933!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00450774571630792!GO:0031418;L-ascorbic acid binding;0.00484338687422004!GO:0003746;translation elongation factor activity;0.00493471335722064!GO:0022890;inorganic cation transmembrane transporter activity;0.00499635574034486!GO:0050662;coenzyme binding;0.00500109536327245!GO:0030880;RNA polymerase complex;0.00508776319028516!GO:0045893;positive regulation of transcription, DNA-dependent;0.00520566063821407!GO:0030041;actin filament polymerization;0.00520800053673373!GO:0030127;COPII vesicle coat;0.00547386824249925!GO:0012507;ER to Golgi transport vesicle membrane;0.00547386824249925!GO:0030134;ER to Golgi transport vesicle;0.00554747658327362!GO:0016481;negative regulation of transcription;0.00603168527455851!GO:0009967;positive regulation of signal transduction;0.00618940451368423!GO:0001726;ruffle;0.00631330381308123!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00642036064690674!GO:0015002;heme-copper terminal oxidase activity;0.00642036064690674!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00642036064690674!GO:0004129;cytochrome-c oxidase activity;0.00642036064690674!GO:0008139;nuclear localization sequence binding;0.00646431145629378!GO:0006595;polyamine metabolic process;0.00665203017668301!GO:0006509;membrane protein ectodomain proteolysis;0.00668714383064558!GO:0033619;membrane protein proteolysis;0.00668714383064558!GO:0051252;regulation of RNA metabolic process;0.00694013032898158!GO:0015631;tubulin binding;0.00694013032898158!GO:0006778;porphyrin metabolic process;0.00718330541975548!GO:0033013;tetrapyrrole metabolic process;0.00718330541975548!GO:0048471;perinuclear region of cytoplasm;0.00772602744094775!GO:0044437;vacuolar part;0.0078734917651763!GO:0030125;clathrin vesicle coat;0.00794671126285355!GO:0030665;clathrin coated vesicle membrane;0.00794671126285355!GO:0048500;signal recognition particle;0.00805049648695947!GO:0007050;cell cycle arrest;0.00812248144238108!GO:0031543;peptidyl-proline dioxygenase activity;0.00812830427571102!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00818421980354023!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00818421980354023!GO:0005096;GTPase activator activity;0.00855813947278584!GO:0046519;sphingoid metabolic process;0.00879310984846809!GO:0019206;nucleoside kinase activity;0.0089165946865786!GO:0006650;glycerophospholipid metabolic process;0.00982119409720708!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0100907267065218!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0100907267065218!GO:0003684;damaged DNA binding;0.0101019774160026!GO:0042168;heme metabolic process;0.0101868698012605!GO:0043433;negative regulation of transcription factor activity;0.010331215139981!GO:0001666;response to hypoxia;0.0104903571039389!GO:0007040;lysosome organization and biogenesis;0.0105470463465356!GO:0019318;hexose metabolic process;0.0106725940810344!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0106725940810344!GO:0012506;vesicle membrane;0.0107560940544422!GO:0005862;muscle thin filament tropomyosin;0.0107931841218199!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.010894142267968!GO:0000428;DNA-directed RNA polymerase complex;0.010894142267968!GO:0006520;amino acid metabolic process;0.0109177306415904!GO:0005869;dynactin complex;0.0109513160032146!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0110036365901145!GO:0031902;late endosome membrane;0.0110876663609908!GO:0016126;sterol biosynthetic process;0.0113654917434684!GO:0040008;regulation of growth;0.0115123937766913!GO:0050789;regulation of biological process;0.0116285435581962!GO:0043488;regulation of mRNA stability;0.0118488776757354!GO:0043487;regulation of RNA stability;0.0118488776757354!GO:0003729;mRNA binding;0.0120499783141596!GO:0004177;aminopeptidase activity;0.0121342381461093!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0122506900406068!GO:0006839;mitochondrial transport;0.0122792626631232!GO:0008022;protein C-terminus binding;0.0125091042101227!GO:0005996;monosaccharide metabolic process;0.0128681371162038!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0128888107204641!GO:0048144;fibroblast proliferation;0.0130461781022285!GO:0048145;regulation of fibroblast proliferation;0.0130461781022285!GO:0005765;lysosomal membrane;0.0132968277977444!GO:0006897;endocytosis;0.0134410012443484!GO:0010324;membrane invagination;0.0134410012443484!GO:0006497;protein amino acid lipidation;0.0134428421506132!GO:0030119;AP-type membrane coat adaptor complex;0.0135168317085133!GO:0006289;nucleotide-excision repair;0.0138405654646302!GO:0007242;intracellular signaling cascade;0.0139443301761933!GO:0031625;ubiquitin protein ligase binding;0.0139443301761933!GO:0051087;chaperone binding;0.0142682797696718!GO:0045045;secretory pathway;0.0143054681679744!GO:0019798;procollagen-proline dioxygenase activity;0.0143442296125463!GO:0051540;metal cluster binding;0.0148082820017762!GO:0051536;iron-sulfur cluster binding;0.0148082820017762!GO:0000209;protein polyubiquitination;0.0148101394332938!GO:0006383;transcription from RNA polymerase III promoter;0.0148539809398883!GO:0003678;DNA helicase activity;0.0150541746430651!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0151873888365832!GO:0045047;protein targeting to ER;0.0151873888365832!GO:0008154;actin polymerization and/or depolymerization;0.0159569866627103!GO:0030521;androgen receptor signaling pathway;0.0160892859350817!GO:0009303;rRNA transcription;0.0161150489566002!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0161345675802045!GO:0008180;signalosome;0.0161345675802045!GO:0007051;spindle organization and biogenesis;0.0161345675802045!GO:0005832;chaperonin-containing T-complex;0.016230160440958!GO:0000082;G1/S transition of mitotic cell cycle;0.0172000712841385!GO:0006807;nitrogen compound metabolic process;0.0181808956606949!GO:0048037;cofactor binding;0.0182157278776306!GO:0008283;cell proliferation;0.0182570377404422!GO:0006672;ceramide metabolic process;0.0187862086575161!GO:0007265;Ras protein signal transduction;0.0189823292259809!GO:0030131;clathrin adaptor complex;0.019059745269126!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0195763739555967!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0195763739555967!GO:0022415;viral reproductive process;0.0196789885780416!GO:0007033;vacuole organization and biogenesis;0.0198064266508381!GO:0016408;C-acyltransferase activity;0.0201018127667053!GO:0000096;sulfur amino acid metabolic process;0.0203722861891198!GO:0008033;tRNA processing;0.0204790372809163!GO:0051539;4 iron, 4 sulfur cluster binding;0.0205435362443675!GO:0008312;7S RNA binding;0.0208168609536127!GO:0048146;positive regulation of fibroblast proliferation;0.0208366594377706!GO:0007569;cell aging;0.0210788770410938!GO:0050811;GABA receptor binding;0.0212571287509584!GO:0005874;microtubule;0.0217035108532428!GO:0006458;'de novo' protein folding;0.0217035108532428!GO:0051084;'de novo' posttranslational protein folding;0.0217035108532428!GO:0008243;plasminogen activator activity;0.0217035108532428!GO:0016363;nuclear matrix;0.0217684124241862!GO:0006739;NADP metabolic process;0.0219746778357454!GO:0044452;nucleolar part;0.0220293860364762!GO:0031529;ruffle organization and biogenesis;0.0221322097717015!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0222387591838467!GO:0006417;regulation of translation;0.0222972943049494!GO:0046365;monosaccharide catabolic process;0.0223416422357811!GO:0000075;cell cycle checkpoint;0.0226886682257021!GO:0005684;U2-dependent spliceosome;0.0227670570368271!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0229546711666327!GO:0005975;carbohydrate metabolic process;0.023432906255966!GO:0022408;negative regulation of cell-cell adhesion;0.0238623353178868!GO:0005100;Rho GTPase activator activity;0.0239177659019841!GO:0051287;NAD binding;0.0240051648479371!GO:0016860;intramolecular oxidoreductase activity;0.024893881199034!GO:0005099;Ras GTPase activator activity;0.024893881199034!GO:0030833;regulation of actin filament polymerization;0.0249731232522198!GO:0006779;porphyrin biosynthetic process;0.025073082052965!GO:0033014;tetrapyrrole biosynthetic process;0.025073082052965!GO:0006695;cholesterol biosynthetic process;0.0251085314947536!GO:0035035;histone acetyltransferase binding;0.0257788533008424!GO:0051336;regulation of hydrolase activity;0.0259804978351358!GO:0035258;steroid hormone receptor binding;0.0268979668373067!GO:0006611;protein export from nucleus;0.0270067785526552!GO:0006892;post-Golgi vesicle-mediated transport;0.0273001810690877!GO:0005801;cis-Golgi network;0.0273129013373279!GO:0006790;sulfur metabolic process;0.0274502398629202!GO:0031301;integral to organelle membrane;0.0274869256512473!GO:0006354;RNA elongation;0.0276344116360377!GO:0043022;ribosome binding;0.0276726442735933!GO:0016272;prefoldin complex;0.0278186783117297!GO:0006749;glutathione metabolic process;0.0278186783117297!GO:0006984;ER-nuclear signaling pathway;0.0278600215255472!GO:0009308;amine metabolic process;0.0278600215255472!GO:0016584;nucleosome positioning;0.0279476812502484!GO:0007088;regulation of mitosis;0.0284994042455525!GO:0033673;negative regulation of kinase activity;0.028506630655063!GO:0006469;negative regulation of protein kinase activity;0.028506630655063!GO:0006405;RNA export from nucleus;0.0292372243498335!GO:0006506;GPI anchor biosynthetic process;0.0295135593778298!GO:0043065;positive regulation of apoptosis;0.0295739641930986!GO:0003711;transcription elongation regulator activity;0.0296796685573133!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0300725917987086!GO:0008538;proteasome activator activity;0.031230681683939!GO:0019320;hexose catabolic process;0.0317132665620561!GO:0006769;nicotinamide metabolic process;0.0317740534947316!GO:0043068;positive regulation of programmed cell death;0.0320593027625753!GO:0016197;endosome transport;0.0321059574182843!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0325387361916367!GO:0051128;regulation of cellular component organization and biogenesis;0.0325439159182594!GO:0005092;GDP-dissociation inhibitor activity;0.0326196101786699!GO:0045792;negative regulation of cell size;0.0327986516909654!GO:0032981;mitochondrial respiratory chain complex I assembly;0.032982127469353!GO:0010257;NADH dehydrogenase complex assembly;0.032982127469353!GO:0033108;mitochondrial respiratory chain complex assembly;0.032982127469353!GO:0009889;regulation of biosynthetic process;0.0329952155329594!GO:0003756;protein disulfide isomerase activity;0.0333818909735769!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0333818909735769!GO:0006505;GPI anchor metabolic process;0.0334970704394643!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0336589101202868!GO:0032508;DNA duplex unwinding;0.0337169019793781!GO:0032392;DNA geometric change;0.0337169019793781!GO:0030433;ER-associated protein catabolic process;0.0337298772946275!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0337298772946275!GO:0006220;pyrimidine nucleotide metabolic process;0.0344179607675661!GO:0006783;heme biosynthetic process;0.0346488306658532!GO:0031901;early endosome membrane;0.0347388091165842!GO:0051348;negative regulation of transferase activity;0.0351381472117972!GO:0042158;lipoprotein biosynthetic process;0.0351381472117972!GO:0046426;negative regulation of JAK-STAT cascade;0.0352071260398408!GO:0006402;mRNA catabolic process;0.0353947660153797!GO:0000339;RNA cap binding;0.0364577289875964!GO:0000030;mannosyltransferase activity;0.0372304599731733!GO:0030911;TPR domain binding;0.0379094486542592!GO:0051101;regulation of DNA binding;0.038092661363787!GO:0000049;tRNA binding;0.0393117487968159!GO:0031124;mRNA 3'-end processing;0.0400730060550544!GO:0030308;negative regulation of cell growth;0.0403154237283452!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0404062259165058!GO:0031371;ubiquitin conjugating enzyme complex;0.0419629537515968!GO:0046822;regulation of nucleocytoplasmic transport;0.0420109709163897!GO:0001953;negative regulation of cell-matrix adhesion;0.0422166684990459!GO:0006401;RNA catabolic process;0.042623949815415!GO:0006096;glycolysis;0.043380644137708!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0434869063052398!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0439918137689976!GO:0003779;actin binding;0.0440723130973864!GO:0003690;double-stranded DNA binding;0.0443682747721139!GO:0006376;mRNA splice site selection;0.044546191394386!GO:0000389;nuclear mRNA 3'-splice site recognition;0.044546191394386!GO:0030032;lamellipodium biogenesis;0.0447352308415942!GO:0008629;induction of apoptosis by intracellular signals;0.0447352308415942!GO:0006302;double-strand break repair;0.044910652003564!GO:0009893;positive regulation of metabolic process;0.0450723019773241!GO:0031326;regulation of cellular biosynthetic process;0.0457112445791397!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0458513023282846!GO:0006352;transcription initiation;0.0459816331935193!GO:0032940;secretion by cell;0.0468014746493256!GO:0005657;replication fork;0.0468707641346006!GO:0030384;phosphoinositide metabolic process;0.0469737964652327!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0470651464382547!GO:0046164;alcohol catabolic process;0.0475557118589237!GO:0018193;peptidyl-amino acid modification;0.0479048851741399!GO:0009262;deoxyribonucleotide metabolic process;0.0488242184484237!GO:0006002;fructose 6-phosphate metabolic process;0.0488478014326849!GO:0008637;apoptotic mitochondrial changes;0.0494207579613772!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0499685805516445!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0499685805516445 | |||
|sample_id=11432 | |sample_id=11432 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=ZNF238:1.4243773331;HIF1A:1.23508513769;CRX:1.20741536262;GZF1:1.11856627042;TLX1..3_NFIC{dimer}:1.11670276272;GTF2A1,2:1.03644032015;TP53:1.00477902035;TAL1_TCF{3,4,12}:0.979935873106;MAFB:0.979718208202;HOX{A5,B5}:0.968984018227;XCPE1{core}:0.925297406983;ZNF148:0.915074151334;TBP:0.828791999533;TFCP2:0.825043904251;SPZ1:0.82468902764;HES1:0.816436170984;MYBL2:0.811300217725;POU2F1..3:0.807393742638;TFAP4:0.790240976414;EBF1:0.732431086107;ONECUT1,2:0.694132197311;GFI1B:0.687375833837;POU6F1:0.684704594304;PBX1:0.649974386121;PRRX1,2:0.644479546353;TBX4,5:0.639315738872;LHX3,4:0.638884492467;HSF1,2:0.623244109404;NFE2L2:0.605657208204;XBP1:0.59821582516;ZBTB6:0.594698359036;ALX4:0.592301218761;bHLH_family:0.582783271143;HMX1:0.536061598807;BACH2:0.533455859206;TEAD1:0.528990239975;ZNF423:0.513598751297;FOX{I1,J2}:0.511222751832;SRF:0.511056492496;EN1,2:0.508055764034;GCM1,2:0.466406352247;POU1F1:0.462025371374;FOS_FOS{B,L1}_JUN{B,D}:0.451140702829;POU3F1..4:0.435871994959;NR3C1:0.429400434886;PPARG:0.41788958596;JUN:0.39693093331;FOSL2:0.391536299787;NFE2L1:0.390429316127;HAND1,2:0.386369917857;NANOG:0.368705752656;PAX1,9:0.35823437164;ADNP_IRX_SIX_ZHX:0.35374914229;NFATC1..3:0.3421585407;GTF2I:0.320298768842;TFAP2B:0.316161952377;GLI1..3:0.313248609821;TFAP2{A,C}:0.312153970049;FOXL1:0.307453934154;RXR{A,B,G}:0.307249088087;MTF1:0.30298250609;LEF1_TCF7_TCF7L1,2:0.291203009223;HOX{A6,A7,B6,B7}:0.286044827103;PAX8:0.283781307761;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.281573614873;DBP:0.280273507812;HIC1:0.270966467843;ZNF384:0.259765884846;SOX{8,9,10}:0.251001329844;AHR_ARNT_ARNT2:0.240299190294;NR1H4:0.228018885826;AR:0.213752789223;ESRRA:0.210634852292;EGR1..3:0.197540375645;PATZ1:0.196920507757;IKZF1:0.193719012376;NFIX:0.186176467172;SP1:0.171255073799;SOX17:0.166640747731;NKX6-1,2:0.164592437817;ATF6:0.146945769475;NANOG{mouse}:0.134889610571;ELK1,4_GABP{A,B1}:0.134224760848;ZIC1..3:0.118376920088;TFDP1:0.116743937312;KLF4:0.109887973163;HLF:0.109380345957;NFE2:0.108485304061;SMAD1..7,9:0.0991132601095;POU5F1:0.0902261160204;NHLH1,2:0.089580619479;HNF1A:0.0868679951771;CDC5L:0.0790590020539;REST:0.0601276481054;NKX2-2,8:0.058484530509;NFIL3:0.0564826779124;NKX3-1:0.0553220721649;MEF2{A,B,C,D}:0.0528930118923;ALX1:0.0297315687749;HBP1_HMGB_SSRP1_UBTF:0.00474957293904;MZF1:0.00460676664418;PAX6:0.000755379484651;GFI1:-0.00465724459949;ESR1:-0.00981930751301;VSX1,2:-0.0200195796638;ZFP161:-0.0208657637202;MED-1{core}:-0.0238281858278;RUNX1..3:-0.0284974682912;ETS1,2:-0.0464494553374;MTE{core}:-0.0465920871952;MYFfamily:-0.0728532153137;RXRA_VDR{dimer}:-0.0753405573437;NFKB1_REL_RELA:-0.0852006072989;NR5A1,2:-0.0856674030496;PAX2:-0.095696892732;PAX5:-0.0987519520659;HMGA1,2:-0.100813833469;CEBPA,B_DDIT3:-0.108320886253;FOXN1:-0.122775261952;ZNF143:-0.127377492677;HOX{A4,D4}:-0.12837429013;PRDM1:-0.142836794385;NKX3-2:-0.149173145425;NKX2-3_NKX2-5:-0.149836992686;MAZ:-0.153321010223;E2F1..5:-0.161220188022;NRF1:-0.189875951523;HNF4A_NR2F1,2:-0.197985003585;SPIB:-0.212036538045;RFX1:-0.213288371827;ELF1,2,4:-0.220524349525;FOX{F1,F2,J1}:-0.238162345972;SOX2:-0.241494001506;MYB:-0.242654543029;ARID5B:-0.261935702354;GATA6:-0.2655168579;FOXQ1:-0.267284296198;OCT4_SOX2{dimer}:-0.269448491129;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.278739400781;EVI1:-0.301527514679;STAT2,4,6:-0.33849344977;GATA4:-0.341483938871;SOX5:-0.346219933619;LMO2:-0.348199957453;EP300:-0.355428319371;TGIF1:-0.35642108538;CREB1:-0.361431419965;ATF5_CREB3:-0.36468361185;NKX2-1,4:-0.368311534371;ATF2:-0.369062338533;FOXP3:-0.371596995962;PAX3,7:-0.382822158607;PDX1:-0.399424033189;HOXA9_MEIS1:-0.402082724742;UFEwm:-0.412838240415;AIRE:-0.420671896793;CUX2:-0.423737351743;TLX2:-0.456360381179;YY1:-0.51663292861;NFY{A,B,C}:-0.521784024583;TOPORS:-0.540684985482;RREB1:-0.544537234926;SPI1:-0.553675436444;RORA:-0.556205538336;STAT5{A,B}:-0.588242572331;SREBF1,2:-0.619612651707;FOXM1:-0.648009865896;TEF:-0.681784454887;DMAP1_NCOR{1,2}_SMARC:-0.687212032514;T:-0.709422592857;ZBTB16:-0.738876272751;FOX{D1,D2}:-0.739173066044;ZEB1:-0.750399010022;IRF1,2:-0.751791687127;SNAI1..3:-0.760417661771;IRF7:-0.852834201317;NR6A1:-0.888523001922;BREu{core}:-0.894197655345;RFX2..5_RFXANK_RFXAP:-0.921665297015;PAX4:-0.947952982852;FOXA2:-0.957798061425;STAT1,3:-0.970187886692;PITX1..3:-1.00378268882;ATF4:-1.01625052253;CDX1,2,4:-1.08434554871;FOXO1,3,4:-1.11145501194;MYOD1:-1.1728324064;IKZF2:-1.1738745924;FOXP1:-1.3598649112;FOXD3:-1.40133372783;BPTF:-1.49864902148;RBPJ:-1.76367365564 | |top_motifs=ZNF238:1.4243773331;HIF1A:1.23508513769;CRX:1.20741536262;GZF1:1.11856627042;TLX1..3_NFIC{dimer}:1.11670276272;GTF2A1,2:1.03644032015;TP53:1.00477902035;TAL1_TCF{3,4,12}:0.979935873106;MAFB:0.979718208202;HOX{A5,B5}:0.968984018227;XCPE1{core}:0.925297406983;ZNF148:0.915074151334;TBP:0.828791999533;TFCP2:0.825043904251;SPZ1:0.82468902764;HES1:0.816436170984;MYBL2:0.811300217725;POU2F1..3:0.807393742638;TFAP4:0.790240976414;EBF1:0.732431086107;ONECUT1,2:0.694132197311;GFI1B:0.687375833837;POU6F1:0.684704594304;PBX1:0.649974386121;PRRX1,2:0.644479546353;TBX4,5:0.639315738872;LHX3,4:0.638884492467;HSF1,2:0.623244109404;NFE2L2:0.605657208204;XBP1:0.59821582516;ZBTB6:0.594698359036;ALX4:0.592301218761;bHLH_family:0.582783271143;HMX1:0.536061598807;BACH2:0.533455859206;TEAD1:0.528990239975;ZNF423:0.513598751297;FOX{I1,J2}:0.511222751832;SRF:0.511056492496;EN1,2:0.508055764034;GCM1,2:0.466406352247;POU1F1:0.462025371374;FOS_FOS{B,L1}_JUN{B,D}:0.451140702829;POU3F1..4:0.435871994959;NR3C1:0.429400434886;PPARG:0.41788958596;JUN:0.39693093331;FOSL2:0.391536299787;NFE2L1:0.390429316127;HAND1,2:0.386369917857;NANOG:0.368705752656;PAX1,9:0.35823437164;ADNP_IRX_SIX_ZHX:0.35374914229;NFATC1..3:0.3421585407;GTF2I:0.320298768842;TFAP2B:0.316161952377;GLI1..3:0.313248609821;TFAP2{A,C}:0.312153970049;FOXL1:0.307453934154;RXR{A,B,G}:0.307249088087;MTF1:0.30298250609;LEF1_TCF7_TCF7L1,2:0.291203009223;HOX{A6,A7,B6,B7}:0.286044827103;PAX8:0.283781307761;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.281573614873;DBP:0.280273507812;HIC1:0.270966467843;ZNF384:0.259765884846;SOX{8,9,10}:0.251001329844;AHR_ARNT_ARNT2:0.240299190294;NR1H4:0.228018885826;AR:0.213752789223;ESRRA:0.210634852292;EGR1..3:0.197540375645;PATZ1:0.196920507757;IKZF1:0.193719012376;NFIX:0.186176467172;SP1:0.171255073799;SOX17:0.166640747731;NKX6-1,2:0.164592437817;ATF6:0.146945769475;NANOG{mouse}:0.134889610571;ELK1,4_GABP{A,B1}:0.134224760848;ZIC1..3:0.118376920088;TFDP1:0.116743937312;KLF4:0.109887973163;HLF:0.109380345957;NFE2:0.108485304061;SMAD1..7,9:0.0991132601095;POU5F1:0.0902261160204;NHLH1,2:0.089580619479;HNF1A:0.0868679951771;CDC5L:0.0790590020539;REST:0.0601276481054;NKX2-2,8:0.058484530509;NFIL3:0.0564826779124;NKX3-1:0.0553220721649;MEF2{A,B,C,D}:0.0528930118923;ALX1:0.0297315687749;HBP1_HMGB_SSRP1_UBTF:0.00474957293904;MZF1:0.00460676664418;PAX6:0.000755379484651;GFI1:-0.00465724459949;ESR1:-0.00981930751301;VSX1,2:-0.0200195796638;ZFP161:-0.0208657637202;MED-1{core}:-0.0238281858278;RUNX1..3:-0.0284974682912;ETS1,2:-0.0464494553374;MTE{core}:-0.0465920871952;MYFfamily:-0.0728532153137;RXRA_VDR{dimer}:-0.0753405573437;NFKB1_REL_RELA:-0.0852006072989;NR5A1,2:-0.0856674030496;PAX2:-0.095696892732;PAX5:-0.0987519520659;HMGA1,2:-0.100813833469;CEBPA,B_DDIT3:-0.108320886253;FOXN1:-0.122775261952;ZNF143:-0.127377492677;HOX{A4,D4}:-0.12837429013;PRDM1:-0.142836794385;NKX3-2:-0.149173145425;NKX2-3_NKX2-5:-0.149836992686;MAZ:-0.153321010223;E2F1..5:-0.161220188022;NRF1:-0.189875951523;HNF4A_NR2F1,2:-0.197985003585;SPIB:-0.212036538045;RFX1:-0.213288371827;ELF1,2,4:-0.220524349525;FOX{F1,F2,J1}:-0.238162345972;SOX2:-0.241494001506;MYB:-0.242654543029;ARID5B:-0.261935702354;GATA6:-0.2655168579;FOXQ1:-0.267284296198;OCT4_SOX2{dimer}:-0.269448491129;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.278739400781;EVI1:-0.301527514679;STAT2,4,6:-0.33849344977;GATA4:-0.341483938871;SOX5:-0.346219933619;LMO2:-0.348199957453;EP300:-0.355428319371;TGIF1:-0.35642108538;CREB1:-0.361431419965;ATF5_CREB3:-0.36468361185;NKX2-1,4:-0.368311534371;ATF2:-0.369062338533;FOXP3:-0.371596995962;PAX3,7:-0.382822158607;PDX1:-0.399424033189;HOXA9_MEIS1:-0.402082724742;UFEwm:-0.412838240415;AIRE:-0.420671896793;CUX2:-0.423737351743;TLX2:-0.456360381179;YY1:-0.51663292861;NFY{A,B,C}:-0.521784024583;TOPORS:-0.540684985482;RREB1:-0.544537234926;SPI1:-0.553675436444;RORA:-0.556205538336;STAT5{A,B}:-0.588242572331;SREBF1,2:-0.619612651707;FOXM1:-0.648009865896;TEF:-0.681784454887;DMAP1_NCOR{1,2}_SMARC:-0.687212032514;T:-0.709422592857;ZBTB16:-0.738876272751;FOX{D1,D2}:-0.739173066044;ZEB1:-0.750399010022;IRF1,2:-0.751791687127;SNAI1..3:-0.760417661771;IRF7:-0.852834201317;NR6A1:-0.888523001922;BREu{core}:-0.894197655345;RFX2..5_RFXANK_RFXAP:-0.921665297015;PAX4:-0.947952982852;FOXA2:-0.957798061425;STAT1,3:-0.970187886692;PITX1..3:-1.00378268882;ATF4:-1.01625052253;CDX1,2,4:-1.08434554871;FOXO1,3,4:-1.11145501194;MYOD1:-1.1728324064;IKZF2:-1.1738745924;FOXP1:-1.3598649112;FOXD3:-1.40133372783;BPTF:-1.49864902148;RBPJ:-1.76367365564 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11432-118H1;search_select_hide=table117:FF:11432-118H1 | |||
}} | }} | ||
Latest revision as of 18:00, 4 June 2020
| Name: | Smooth Muscle Cells - Aortic, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11309 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11309
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11309
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.489 |
| 10 | 10 | 0.0584 |
| 100 | 100 | 0.241 |
| 101 | 101 | 0.111 |
| 102 | 102 | 0.955 |
| 103 | 103 | 0.914 |
| 104 | 104 | 0.488 |
| 105 | 105 | 0.316 |
| 106 | 106 | 0.212 |
| 107 | 107 | 0.265 |
| 108 | 108 | 0.845 |
| 109 | 109 | 0.295 |
| 11 | 11 | 0.141 |
| 110 | 110 | 0.646 |
| 111 | 111 | 0.119 |
| 112 | 112 | 0.685 |
| 113 | 113 | 0.0502 |
| 114 | 114 | 0.994 |
| 115 | 115 | 0.664 |
| 116 | 116 | 0.0305 |
| 117 | 117 | 0.575 |
| 118 | 118 | 0.188 |
| 119 | 119 | 0.832 |
| 12 | 12 | 0.813 |
| 120 | 120 | 0.511 |
| 121 | 121 | 0.581 |
| 122 | 122 | 0.6 |
| 123 | 123 | 0.0225 |
| 124 | 124 | 0.741 |
| 125 | 125 | 0.702 |
| 126 | 126 | 0.808 |
| 127 | 127 | 0.57 |
| 128 | 128 | 0.658 |
| 129 | 129 | 0.815 |
| 13 | 13 | 0.109 |
| 130 | 130 | 0.0191 |
| 131 | 131 | 0.0544 |
| 132 | 132 | 0.777 |
| 133 | 133 | 0.609 |
| 134 | 134 | 0.185 |
| 135 | 135 | 0.416 |
| 136 | 136 | 0.66 |
| 137 | 137 | 0.809 |
| 138 | 138 | 0.355 |
| 139 | 139 | 0.353 |
| 14 | 14 | 0.374 |
| 140 | 140 | 0.201 |
| 141 | 141 | 0.0133 |
| 142 | 142 | 0.76 |
| 143 | 143 | 0.0203 |
| 144 | 144 | 0.853 |
| 145 | 145 | 0.121 |
| 146 | 146 | 0.0722 |
| 147 | 147 | 0.665 |
| 148 | 148 | 0.532 |
| 149 | 149 | 0.55 |
| 15 | 15 | 0.742 |
| 150 | 150 | 0.515 |
| 151 | 151 | 0.799 |
| 152 | 152 | 0.0174 |
| 153 | 153 | 0.942 |
| 154 | 154 | 0.85 |
| 155 | 155 | 0.0739 |
| 156 | 156 | 0.591 |
| 157 | 157 | 0.748 |
| 158 | 158 | 0.0398 |
| 159 | 159 | 0.553 |
| 16 | 16 | 0.438 |
| 160 | 160 | 0.591 |
| 161 | 161 | 0.415 |
| 162 | 162 | 0.88 |
| 163 | 163 | 0.721 |
| 164 | 164 | 0.911 |
| 165 | 165 | 0.396 |
| 166 | 166 | 0.709 |
| 167 | 167 | 0.429 |
| 168 | 168 | 0.631 |
| 169 | 169 | 0.278 |
| 17 | 17 | 0.239 |
| 18 | 18 | 0.152 |
| 19 | 19 | 0.442 |
| 2 | 2 | 0.775 |
| 20 | 20 | 0.157 |
| 21 | 21 | 0.776 |
| 22 | 22 | 0.178 |
| 23 | 23 | 0.0267 |
| 24 | 24 | 0.174 |
| 25 | 25 | 0.409 |
| 26 | 26 | 0.279 |
| 27 | 27 | 0.978 |
| 28 | 28 | 0.147 |
| 29 | 29 | 0.993 |
| 3 | 3 | 0.758 |
| 30 | 30 | 0.0509 |
| 31 | 31 | 0.991 |
| 32 | 32 | 0.31 |
| 33 | 33 | 0.975 |
| 34 | 34 | 0.52 |
| 35 | 35 | 0.456 |
| 36 | 36 | 0.316 |
| 37 | 37 | 0.732 |
| 38 | 38 | 0.65 |
| 39 | 39 | 0.44 |
| 4 | 4 | 0.934 |
| 40 | 40 | 0.908 |
| 41 | 41 | 0.664 |
| 42 | 42 | 0.821 |
| 43 | 43 | 0.392 |
| 44 | 44 | 0.432 |
| 45 | 45 | 0.239 |
| 46 | 46 | 0.394 |
| 47 | 47 | 0.94 |
| 48 | 48 | 0.547 |
| 49 | 49 | 0.841 |
| 5 | 5 | 0.888 |
| 50 | 50 | 0.263 |
| 51 | 51 | 0.776 |
| 52 | 52 | 0.325 |
| 53 | 53 | 0.232 |
| 54 | 54 | 0.959 |
| 55 | 55 | 0.513 |
| 56 | 56 | 0.886 |
| 57 | 57 | 0.844 |
| 58 | 58 | 0.46 |
| 59 | 59 | 0.36 |
| 6 | 6 | 0.655 |
| 60 | 60 | 0.889 |
| 61 | 61 | 0.659 |
| 62 | 62 | 0.66 |
| 63 | 63 | 0.434 |
| 64 | 64 | 0.498 |
| 65 | 65 | 0.215 |
| 66 | 66 | 0.109 |
| 67 | 67 | 0.444 |
| 68 | 68 | 0.683 |
| 69 | 69 | 0.228 |
| 7 | 7 | 0.509 |
| 70 | 70 | 0.811 |
| 71 | 71 | 0.646 |
| 72 | 72 | 0.441 |
| 73 | 73 | 0.00273 |
| 74 | 74 | 0.468 |
| 75 | 75 | 0.985 |
| 76 | 76 | 0.943 |
| 77 | 77 | 0.188 |
| 78 | 78 | 0.256 |
| 79 | 79 | 0.862 |
| 8 | 8 | 0.632 |
| 80 | 80 | 0.794 |
| 81 | 81 | 0.486 |
| 82 | 82 | 0.959 |
| 83 | 83 | 0.893 |
| 84 | 84 | 0.581 |
| 85 | 85 | 0.586 |
| 86 | 86 | 0.651 |
| 87 | 87 | 0.0951 |
| 88 | 88 | 0.378 |
| 89 | 89 | 0.501 |
| 9 | 9 | 0.13 |
| 90 | 90 | 0.608 |
| 91 | 91 | 0.462 |
| 92 | 92 | 0.89 |
| 93 | 93 | 0.981 |
| 94 | 94 | 0.416 |
| 95 | 95 | 0.873 |
| 96 | 96 | 0.987 |
| 97 | 97 | 0.309 |
| 98 | 98 | 0.272 |
| 99 | 99 | 0.0267 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11309
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000168 (human aortic smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
