FFCP PHASE1:Mm9::chr1:46910454..46910475,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=227059 | |EntrezGene=227059 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q6P5F6 | |UniProt=Q6P5F6 | ||
|association_with_transcript=-100bp_to_NM_172653,uc007axc.1_5end | |association_with_transcript=-100bp_to_NM_172653,uc007axc.1_5end | ||
|cluster_id=chr1:46910454..46910475,- | |||
|description=CAGE_peak_2_at_Slc39a10_5end | |description=CAGE_peak_2_at_Slc39a10_5end | ||
|id=chr1:46910454..46910475,- | |id=chr1:46910454..46910475,- | ||
|ontology_enrichment_celltype=CL:0000393!3.53e-10!39;CL:0000211!3.53e-10!39;CL:0000540!7.13e-10!33;CL:0000047!7.13e-10!33;CL:0000031!7.13e-10!33;CL:0000404!7.13e-10!33;CL:0000055!9.59e-08!50;CL:0002319!2.31e-07!43;CL:0000221!3.50e-07!44;CL:0000133!3.50e-07!44;CL:0000117!8.93e-07!23;CL:0000337!8.93e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,6.41e-11,39;CL:0000211,6.41e-11,39;CL:0000540,1.59e-10,33;CL:0000047,1.59e-10,33;CL:0000031,1.59e-10,33;CL:0000404,1.59e-10,33;CL:0002319,3.65e-08,43;CL:0000221,1.06e-07,44;CL:0000133,1.06e-07,44;CL:0000117,1.99e-07,23;CL:0000337,1.99e-07,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.11e-16!75;UBERON:0001016!3.11e-16!75;UBERON:0001017!1.30e-15!73;UBERON:0005743!1.30e-15!73;UBERON:0004121!4.32e-15!102;UBERON:0000924!4.32e-15!102;UBERON:0006601!4.32e-15!102;UBERON:0001049!9.22e-12!52;UBERON:0005068!9.22e-12!52;UBERON:0006241!9.22e-12!52;UBERON:0007135!9.22e-12!52;UBERON:0002616!2.41e-11!49;UBERON:0000955!4.61e-11!50;UBERON:0006238!4.61e-11!50;UBERON:0002346!1.04e-10!71;UBERON:0003075!1.04e-10!71;UBERON:0007284!1.04e-10!71;UBERON:0002020!2.79e-10!34;UBERON:0003080!7.67e-10!40;UBERON:0000033!9.16e-10!63;UBERON:0003056!1.74e-09!49;UBERON:0002780!2.11e-09!39;UBERON:0001890!2.11e-09!39;UBERON:0006240!2.11e-09!39;UBERON:0002791!1.38e-08!29;UBERON:0003528!1.38e-08!29;UBERON:0001893!1.38e-08!29;UBERON:0002021!3.92e-08!10;UBERON:0000411!3.92e-08!10;UBERON:0001950!3.92e-08!10;UBERON:0000153!3.54e-07!94;UBERON:0000468!9.32e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.16e-18,75;UBERON:0004121,2.47e-17,95;UBERON:0000924,2.47e-17,95;UBERON:0006601,2.47e-17,95;UBERON:0001017,4.24e-17,73;UBERON:0000073,1.30e-14,54;UBERON:0010371,1.88e-14,73;UBERON:0002346,4.58e-13,64;UBERON:0003075,4.58e-13,64;UBERON:0007284,4.58e-13,64;UBERON:0001049,4.63e-13,52;UBERON:0005068,4.63e-13,52;UBERON:0006241,4.63e-13,52;UBERON:0007135,4.63e-13,52;UBERON:0002020,1.60e-11,34;UBERON:0003080,5.14e-11,40;UBERON:0002616,8.58e-11,46;UBERON:0002780,1.65e-10,39;UBERON:0001890,1.65e-10,39;UBERON:0006240,1.65e-10,39;UBERON:0000955,3.03e-10,47;UBERON:0006238,3.03e-10,47;UBERON:0003056,1.02e-09,49;UBERON:0003528,1.47e-09,29;UBERON:0002791,1.47e-09,29;UBERON:0001893,1.47e-09,29;UBERON:0002021,3.25e-09,10;UBERON:0000411,3.25e-09,10;UBERON:0001950,3.25e-09,10;UBERON:0010314,2.28e-08,92;UBERON:0000922,5.82e-07,320;UBERON:0000956,6.99e-07,21;UBERON:0001869,6.99e-07,21;UBERON:0000203,6.99e-07,21;UBERON:0002619,7.21e-07,17 | |||
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| ||
|short_description=p2@Slc39a10 | |short_description=p2@Slc39a10 | ||
}} | }} |
Latest revision as of 04:36, 27 September 2015
Short description: | p2@Slc39a10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Slc39a10_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | -100bp_to_NM_172653, uc007axc.1_5end |
EntrezGene: | Slc39a10 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 6.41e-11 | 39 |
electrically active cell | 6.41e-11 | 39 |
neuron | 1.59e-10 | 33 |
neuronal stem cell | 1.59e-10 | 33 |
neuroblast | 1.59e-10 | 33 |
electrically signaling cell | 1.59e-10 | 33 |
neural cell | 3.65e-08 | 43 |
ectodermal cell | 1.06e-07 | 44 |
neurectodermal cell | 1.06e-07 | 44 |
CNS neuron (sensu Vertebrata) | 1.99e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.99e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.16e-18 | 75 |
ectoderm-derived structure | 2.47e-17 | 95 |
ectoderm | 2.47e-17 | 95 |
presumptive ectoderm | 2.47e-17 | 95 |
central nervous system | 4.24e-17 | 73 |
regional part of nervous system | 1.30e-14 | 54 |
ecto-epithelium | 1.88e-14 | 73 |
neurectoderm | 4.58e-13 | 64 |
neural plate | 4.58e-13 | 64 |
presumptive neural plate | 4.58e-13 | 64 |
neural tube | 4.63e-13 | 52 |
neural rod | 4.63e-13 | 52 |
future spinal cord | 4.63e-13 | 52 |
neural keel | 4.63e-13 | 52 |
gray matter | 1.60e-11 | 34 |
anterior neural tube | 5.14e-11 | 40 |
regional part of brain | 8.58e-11 | 46 |
regional part of forebrain | 1.65e-10 | 39 |
forebrain | 1.65e-10 | 39 |
future forebrain | 1.65e-10 | 39 |
brain | 3.03e-10 | 47 |
future brain | 3.03e-10 | 47 |
pre-chordal neural plate | 1.02e-09 | 49 |
brain grey matter | 1.47e-09 | 29 |
regional part of telencephalon | 1.47e-09 | 29 |
telencephalon | 1.47e-09 | 29 |
occipital lobe | 3.25e-09 | 10 |
visual cortex | 3.25e-09 | 10 |
neocortex | 3.25e-09 | 10 |
structure with developmental contribution from neural crest | 2.28e-08 | 92 |
embryo | 5.82e-07 | 320 |
cerebral cortex | 6.99e-07 | 21 |
cerebral hemisphere | 6.99e-07 | 21 |
pallium | 6.99e-07 | 21 |
regional part of cerebral cortex | 7.21e-07 | 17 |