FFCP PHASE1:Hg19::chr12:6485300..6485325,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6337 | |EntrezGene=6337 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10599 | |HGNC=10599 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-106bp_to_ENST00000536411_5end | |association_with_transcript=-106bp_to_ENST00000536411_5end | ||
|cluster_id=chr12:6485300..6485325,- | |||
|coexpression_cluster_id=C2229 | |||
|description=CAGE_peak_5_at_SCNN1A_5end | |description=CAGE_peak_5_at_SCNN1A_5end | ||
|id=chr12:6485300..6485325,- | |id=chr12:6485300..6485325,- | ||
|ontology_enrichment_celltype=CL:0000066!3.30e-29!254;CL:0000223!6.36e-16!59;CL:0002076!3.11e-15!43;CL:0002368!7.50e-10!13;CL:1000507!4.79e-08!12;CL:1000494!4.79e-08!12 | |ontology_enrichment_celltype=CL:0000066!3.30e-29!254;CL:0000223!6.36e-16!59;CL:0002076!3.11e-15!43;CL:0002368!7.50e-10!13;CL:1000507!4.79e-08!12;CL:1000494!4.79e-08!12 | ||
|ontology_enrichment_celltype_v019=CL:1000507;2.16e-15;10!CL:1000494;2.16e-15;10!CL:1000449;2.04e-12;15!CL:1000497;1.01e-10;17!CL:0002518;1.01e-10;17!CL:0002368;1.01e-10;13!CL:0002681;8.31e-10;12!CL:0002584;8.31e-10;12!CL:0002076;1.44e-09;42!CL:0002577;9.84e-09;3!CL:0000239;1.53e-08;3!CL:1000615;1.53e-08;3!CL:0002306;1.53e-08;3!CL:0000349;3.66e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.80e-19,253;CL:1000507,2.17e-15,10;CL:1000494,2.17e-15,10;CL:1000449,2.03e-12,15;CL:0002076,2.86e-12,42;CL:0002368,9.34e-11,13;CL:1000497,1.00e-10,17;CL:0002518,1.00e-10,17;CL:0000223,6.34e-10,58;CL:0002681,8.72e-10,12;CL:0002584,8.72e-10,12;CL:0002577,8.40e-09,3;CL:0000239,1.87e-08,3;CL:1000615,1.87e-08,3;CL:0002306,1.87e-08,3;CL:0000349,2.24e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.83e-08;10!UBERON:0005564;4.83e-08;10 | |||
|ontology_enrichment_disease=DOID:305!5.82e-19!106;DOID:0050687!2.63e-12!143;DOID:1749!1.37e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!9.37e-20!169;UBERON:0000925!9.37e-20!169;UBERON:0006595!9.37e-20!169;UBERON:0000466!7.71e-19!126;UBERON:0000464!7.27e-18!104;UBERON:0005177!2.73e-17!107;UBERON:0000077!6.19e-17!130;UBERON:0004921!6.91e-15!129;UBERON:0004185!6.91e-15!129;UBERON:0001007!3.44e-14!155;UBERON:0001555!3.44e-14!155;UBERON:0007026!3.44e-14!155;UBERON:0006554!5.51e-14!44;UBERON:0005911!1.24e-13!82;UBERON:0001008!1.97e-13!45;UBERON:0001041!5.32e-13!98;UBERON:0005153!1.54e-12!37;UBERON:0001004!2.65e-12!72;UBERON:0000065!1.12e-11!53;UBERON:0005178!6.33e-11!34;UBERON:0002224!6.33e-11!34;UBERON:0003104!1.07e-10!238;UBERON:0009142!1.07e-10!238;UBERON:0008947!1.16e-10!38;UBERON:0003258!1.16e-10!38;UBERON:0005181!2.21e-10!35;UBERON:0001048!4.02e-10!168;UBERON:0009569!5.16e-10!113;UBERON:0000481!5.79e-10!347;UBERON:0000489!1.50e-09!32;UBERON:0000058!2.66e-09!26;UBERON:0003101!3.00e-09!22;UBERON:0000079!3.00e-09!22;UBERON:0002113!3.68e-09!27;UBERON:0003918!3.68e-09!27;UBERON:0005095!3.68e-09!27;UBERON:0007687!3.68e-09!27;UBERON:0002553!1.07e-08!70;UBERON:0005157!1.19e-08!51;UBERON:0002048!1.27e-08!22;UBERON:0000117!1.27e-08!22;UBERON:0000171!1.27e-08!22;UBERON:0000170!1.27e-08!22;UBERON:0005597!1.27e-08!22;UBERON:0000118!1.27e-08!22;UBERON:0003064!2.03e-08!37;UBERON:0000080!2.94e-08!18;UBERON:0002120!2.94e-08!18;UBERON:0004875!2.94e-08!18;UBERON:0005721!2.94e-08!18;UBERON:0005754!2.94e-08!18;UBERON:0007297!2.94e-08!18;UBERON:0000062!3.08e-08!511;UBERON:0000922!3.17e-08!612;UBERON:0009773!4.79e-08!12;UBERON:0001231!4.79e-08!12;UBERON:0004810!4.79e-08!12;UBERON:0005156!7.54e-08!59;UBERON:0000990!7.54e-08!59;UBERON:0000072!1.56e-07!46;UBERON:0003135!1.77e-07!11;UBERON:0006555!1.82e-07!17;UBERON:0005103!1.82e-07!17;UBERON:0000083!1.82e-07!17;UBERON:0009201!1.82e-07!17;UBERON:0004819!1.82e-07!17;UBERON:0006553!1.82e-07!17;UBERON:0003074!1.82e-07!17;UBERON:0003060!1.82e-07!17;UBERON:0007196!5.19e-07!14;UBERON:0001558!5.19e-07!14;UBERON:0004876!5.36e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0003135;4.49e-16;11!UBERON:0004211;2.16e-15;10!UBERON:0009773;2.16e-15;10!UBERON:0001231;2.16e-15;10!UBERON:0004810;2.16e-15;10!UBERON:0006554;4.97e-15;30!UBERON:0001008;4.97e-15;30!UBERON:0000473;7.13e-14;8!UBERON:0002113;8.66e-13;24!UBERON:0011143;8.66e-13;24!UBERON:0006555;2.04e-12;15!UBERON:0004819;2.04e-12;15!UBERON:0001285;2.04e-12;15!UBERON:0007684;2.04e-12;15!UBERON:0000489;8.65e-12;29!UBERON:0003101;7.70e-11;22!UBERON:0000079;7.70e-11;22!UBERON:0001225;8.31e-10;12!UBERON:0008987;8.31e-10;12!UBERON:0006853;1.53e-08;3!UBERON:0007685;1.53e-08;3!UBERON:0004134;1.53e-08;3!UBERON:0006947;7.79e-08;3!UBERON:0004054;7.79e-08;3!UBERON:0001851;1.35e-07;15!UBERON:0000353;1.35e-07;15!UBERON:0002048;3.75e-07;22!UBERON:0000117;3.75e-07;22!UBERON:0000171;3.75e-07;22!UBERON:0000170;3.75e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,9.39e-20,47;UBERON:0001008,3.28e-19,48;UBERON:0003135,2.79e-16,11;UBERON:0002113,6.70e-16,26;UBERON:0003918,6.70e-16,26;UBERON:0011143,6.70e-16,26;UBERON:0005095,6.70e-16,26;UBERON:0007687,6.70e-16,26;UBERON:0004810,2.17e-15,10;UBERON:0000489,1.51e-14,31;UBERON:0006555,2.93e-14,16;UBERON:0004819,2.93e-14,16;UBERON:0000473,6.19e-14,8;UBERON:0005177,2.03e-12,101;UBERON:0004211,2.03e-12,15;UBERON:0009773,2.03e-12,15;UBERON:0001231,2.03e-12,15;UBERON:0001285,2.03e-12,15;UBERON:0007684,2.03e-12,15;UBERON:0004208,2.03e-12,15;UBERON:0003101,6.51e-11,22;UBERON:0000079,6.51e-11,22;UBERON:0003133,2.82e-10,48;UBERON:0005156,7.51e-10,59;UBERON:0000990,7.51e-10,59;UBERON:0001225,8.72e-10,12;UBERON:0008987,8.72e-10,12;UBERON:0009569,1.34e-09,112;UBERON:0005153,1.52e-09,37;UBERON:0006853,1.87e-08,3;UBERON:0007685,1.87e-08,3;UBERON:0004134,1.87e-08,3;UBERON:0005631,2.89e-08,14;UBERON:0000158,2.89e-08,14;UBERON:0006947,5.48e-08,3;UBERON:0004054,5.48e-08,3;UBERON:0004175,5.76e-08,25;UBERON:0005172,6.63e-08,54;UBERON:0005173,6.63e-08,54;UBERON:0001851,1.40e-07,15;UBERON:0000353,1.40e-07,15;UBERON:0002048,2.82e-07,22;UBERON:0000117,2.82e-07,22;UBERON:0000171,2.82e-07,22;UBERON:0000170,2.82e-07,22;UBERON:0005597,2.82e-07,22;UBERON:0000118,2.82e-07,22;UBERON:0000058,3.23e-07,19;UBERON:0002553,3.38e-07,61;UBERON:0000080,4.89e-07,9;UBERON:0002120,4.89e-07,9;UBERON:0004875,4.89e-07,9;UBERON:0005721,4.89e-07,9;UBERON:0005754,4.89e-07,9;UBERON:0007297,4.89e-07,9;UBERON:0005157,7.96e-07,47;UBERON:0002417,9.72e-07,60;UBERON:0000916,9.72e-07,60 | |||
|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,4.17747692052565,6.97801167972428,15.0724546769819,20.5738243018194,0.37129905888014,0.994192127183747,0,0,0,0,0.369363174230364,1.22400414746552,0,0.286235987131057,0.821246550437305,0,0,0,0,0,0,0,1.83884244895785,0.90361775633475,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0.486634870302636,0.850813354476611,1.33037638477538,0.966182642624386,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0.731842236777572,0.795178609928912,0.580969714347592,0.518305275076852,1.26160425437814,0,0,0,0,0,0,0.473227200159376,0.505754070234305,0,0.441175890929576,0,0,0.404493924480493,0,0,0,0,0.8231480226628,0,0,0,0,0,3.44367627920718,1.20097467208968,0.219500570817251,0,0.100528972411631,0.277765335475589,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0.141775097242386,3.67189943081678,2.61570544662566,3.06706143332169,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,3.57656445851882,0,0,0,0,0,0,0,1.62786481617433,0.823240336780769,0,0.355391948742546,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,1.00034104211935,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0.195801157462741,0,0,0,0,2.72814814301633,16.6435439510497,7.86214762657169,0,0,0,0,0,0,0,0,0,0,0,0,5.07609688284813,1.20303882181971,0.552485933615378,0,0,0.131124414959424,2.70719767744447,0.462092022626489,3.13739907670742,2.92278449306521,0.422206515571503,0,0,0,0,4.87703587578935,5.01689773854853,7.39141191830611,4.15538004464362,2.0148727924996,0,0,0,0.656029291399411,0.325378394664303,0.618246069886334,0.0915694648183434,0,0,0,0,0,0,0.460511024178389,0,0,0.145016693914229,0,0,1.15699440752685,3.45942121257191,5.74257206225629,0.4046311234222,0,0,0,0,0,0,0,0,0.744316738719335,0,0.190630193923825,0,0,0,0,0,0.274537029736055,0,0,0,0,0.975267478179181,0,0,0.136499911407986,0,0,0,0,0,0.578775534266688,0.655894752046633,0,0,0,0,0.0982490410131212,0,0,0,0,0,1.04980416073495,0.384888450902048,0.670302275535787,2.17781969722645,0.470719003883896,1.29151611801369,1.68471475667626,0.886860307073351,0,0,0,0,0,0,0,0,0,0.427296284509893,6.73735898684351,0.245040215981032,0,0,0,0,0,0,0.423347165447766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33228787199128,0,0.561421621224659,0,0,0,0,1.90995587790152,0,0.614321404198464,0,0,0,0,7.38938928447977,0,0,0,0.306806047506464,0,0,0.179736702294654,0.179021174675609,0,0.591860433821602,0,0,0,0,0,0,0,1.44999915086959,0.910347586283997,3.0510438035132,0.236387681767936,0,0,0,0,0,0,0,0,0.219385397153973,0.10893846351899,0,0.230850775511391,0,0,0.0897576444097721,0,1.91400695839152,0,0,0,0,0,0,0,0,0,0,0.632994193584081,1.46909527343233,0.848118428603645,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0.19566461893209,1.69946265673865,1.97292201424695,0,0,0.31593289814244,0,0,0.664653872707185,0,0.313932918407225,0,1.42304773014896,0,4.68611293504853,1.07791637155815,1.13176968554523,3.14508002835654,0,0.0967563312890851,0.146178634172371,0.164230914106418,0,0.176512253383001,0,0,0,0,4.10657903743086,0.0801588202515337,0,0.799238438328521,0,0,0,0,0.248505071130865,1.64985824231757,0.135904206073614,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,1.16495949527454,0.315132729228895,0.412079291905832,0.404421263125109,0.885847333632739,0,0,0.136203406111576,0.964518890790115,0.412618309791701,2.49264202817511,0,0,0.0607495566580247,0,7.32893077882543,1.10154635083496,0.316801009558219,0,0.191915197319445,0,0,0.76280561296425,0,0,0,0,0,0,0.453248366080503,0,0,0,0,0.171086837884329,14.8011154686501,4.37828391527548,1.57204305099666,1.65695622138878,0,0,0,0.638341257770182,0,0,0,0,1.41348686625211,0,0,0,2.86704597845036,0.887432412294818,0.496771223531068,0,0.74988244777264,0,0,0,1.87333962322753,1.30428925749743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453411851024545,0.231522474323834,0.244736704506468,0,0,0.438568099157414,0,0.192914038270915,1.01365464391844,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.294443155503077,1.06172751012966,0,0.924205329202706,0,0,0,0.300841313397029,0,0,0,0.49131575253029,2.06998520703863,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0.682986574053893,0.266107110487916,0,0.171488009437418,0,0,0.709163045303809,0.111231401892069,0.549451649953598,0,0.280272163313789,0,0,0,1.35805433935647,0,1.62737995515375,0,0,1.45051314914126,0.85359238546975,3.45629830907046,0.430227358820278,0,0,2.11693525095465,5.72767171360125,0,0,0.671132590786754,0.098150233615243,0.365753774946808,0,0,0,0,0.46787892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| ||
|short_description=p5@SCNN1A | |short_description=p5@SCNN1A | ||
}} | }} |
Latest revision as of 20:55, 19 September 2015
Short description: | p5@SCNN1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SCNN1A_5end |
Coexpression cluster: | C2229_Amniotic_Placental_lung_thyroid_kidney_Small_testicular |
Association with transcript: | -106bp_to_ENST00000536411_5end |
EntrezGene: | SCNN1A |
HGNC: | 10599 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.80e-19 | 253 |
kidney tubule cell | 2.17e-15 | 10 |
nephron tubule epithelial cell | 2.17e-15 | 10 |
epithelial cell of nephron | 2.03e-12 | 15 |
endo-epithelial cell | 2.86e-12 | 42 |
respiratory epithelial cell | 9.34e-11 | 13 |
kidney cell | 1.00e-10 | 17 |
kidney epithelial cell | 1.00e-10 | 17 |
endodermal cell | 6.34e-10 | 58 |
kidney cortical cell | 8.72e-10 | 12 |
renal cortical epithelial cell | 8.72e-10 | 12 |
placental epithelial cell | 8.40e-09 | 3 |
brush border epithelial cell | 1.87e-08 | 3 |
kidney cortex tubule cell | 1.87e-08 | 3 |
epithelial cell of proximal tubule | 1.87e-08 | 3 |
extraembryonic cell | 2.24e-07 | 19 |