FFCP PHASE1:Mm9::chr8:49641251..49641335,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=23965 | |EntrezGene=23965 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2482 | |||
|TSSclassifier=NA | |||
|UniProt=D3YW50 | |UniProt=D3YW50 | ||
|association_with_transcript=-51bp_to_ENSMUST00000110345_5end | |association_with_transcript=-51bp_to_ENSMUST00000110345_5end | ||
|cluster_id=chr8:49641251..49641335,- | |||
|description=CAGE_peak_3_at_Odz3_5end | |description=CAGE_peak_3_at_Odz3_5end | ||
|id=chr8:49641251..49641335,- | |id=chr8:49641251..49641335,- | ||
|ontology_enrichment_celltype=CL:0000540!9.22e-13!33;CL:0000047!9.22e-13!33;CL:0000031!9.22e-13!33;CL:0000404!9.22e-13!33;CL:0000221!1.23e-11!44;CL:0000133!1.23e-11!44;CL:0002319!2.32e-11!43;CL:0000117!1.13e-10!23;CL:0000337!1.13e-10!23;CL:0000393!1.87e-09!39;CL:0000211!1.87e-09!39;CL:0000055!1.46e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.18e-13,33;CL:0000047,1.18e-13,33;CL:0000031,1.18e-13,33;CL:0000404,1.18e-13,33;CL:0000221,2.52e-12,44;CL:0000133,2.52e-12,44;CL:0002319,5.00e-12,43;CL:0000117,2.11e-11,23;CL:0000337,2.11e-11,23;CL:0000393,1.42e-10,39;CL:0000211,1.42e-10,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.65e-27!73;UBERON:0005743!3.65e-27!73;UBERON:0000073!3.88e-27!75;UBERON:0001016!3.88e-27!75;UBERON:0004121!2.10e-24!102;UBERON:0000924!2.10e-24!102;UBERON:0006601!2.10e-24!102;UBERON:0002346!2.34e-20!71;UBERON:0003075!2.34e-20!71;UBERON:0007284!2.34e-20!71;UBERON:0001049!5.49e-20!52;UBERON:0005068!5.49e-20!52;UBERON:0006241!5.49e-20!52;UBERON:0007135!5.49e-20!52;UBERON:0000033!5.85e-20!63;UBERON:0000955!7.42e-19!50;UBERON:0006238!7.42e-19!50;UBERON:0003056!9.12e-19!49;UBERON:0002616!3.03e-18!49;UBERON:0003080!3.04e-17!40;UBERON:0002780!1.31e-16!39;UBERON:0001890!1.31e-16!39;UBERON:0006240!1.31e-16!39;UBERON:0002020!5.70e-16!34;UBERON:0002791!6.31e-13!29;UBERON:0003528!6.31e-13!29;UBERON:0001893!6.31e-13!29;UBERON:0000153!1.06e-11!94;UBERON:0000468!6.00e-10!333;UBERON:0007811!1.81e-09!86;UBERON:0000956!8.40e-09!21;UBERON:0001869!8.40e-09!21;UBERON:0000203!8.40e-09!21;UBERON:0002021!2.96e-08!10;UBERON:0000411!2.96e-08!10;UBERON:0001950!2.96e-08!10;UBERON:0002619!4.87e-08!17;UBERON:0000922!2.76e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.10e-28,73;UBERON:0001016,1.16e-28,75;UBERON:0004121,3.63e-26,95;UBERON:0000924,3.63e-26,95;UBERON:0006601,3.63e-26,95;UBERON:0002346,1.51e-23,64;UBERON:0003075,1.51e-23,64;UBERON:0007284,1.51e-23,64;UBERON:0000073,7.33e-23,54;UBERON:0010371,2.52e-21,73;UBERON:0001049,2.65e-21,52;UBERON:0005068,2.65e-21,52;UBERON:0006241,2.65e-21,52;UBERON:0007135,2.65e-21,52;UBERON:0003056,3.83e-20,49;UBERON:0003080,1.69e-18,40;UBERON:0000955,5.11e-18,47;UBERON:0006238,5.11e-18,47;UBERON:0002780,8.17e-18,39;UBERON:0001890,8.17e-18,39;UBERON:0006240,8.17e-18,39;UBERON:0002616,2.24e-17,46;UBERON:0002020,4.02e-17,34;UBERON:0003528,7.80e-14,29;UBERON:0002791,7.80e-14,29;UBERON:0001893,7.80e-14,29;UBERON:0010314,2.60e-13,92;UBERON:0000956,2.21e-09,21;UBERON:0001869,2.21e-09,21;UBERON:0000203,2.21e-09,21;UBERON:0002021,8.60e-09,10;UBERON:0000411,8.60e-09,10;UBERON:0001950,8.60e-09,10;UBERON:0002619,1.47e-08,17 | |||
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372860115374,7.7753898202241,3.87342102964915,4.43685205256625,6.24526444844865,2.8071793013449,3.43793686477277,3.82576664137687,2.20591419119516,2.08681052058379 | ||
|short_description=p3@Odz3 | |short_description=p3@Odz3 | ||
}} | }} |
Latest revision as of 15:04, 25 September 2015
Short description: | p3@Odz3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Odz3_5end |
Coexpression cluster: | MCL_coexpression_mm9:2482 |
Association with transcript: | -51bp_to_ENSMUST00000110345_5end |
EntrezGene: | Odz3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.18e-13 | 33 |
neuronal stem cell | 1.18e-13 | 33 |
neuroblast | 1.18e-13 | 33 |
electrically signaling cell | 1.18e-13 | 33 |
ectodermal cell | 2.52e-12 | 44 |
neurectodermal cell | 2.52e-12 | 44 |
neural cell | 5.00e-12 | 43 |
CNS neuron (sensu Vertebrata) | 2.11e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.11e-11 | 23 |
electrically responsive cell | 1.42e-10 | 39 |
electrically active cell | 1.42e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.10e-28 | 73 |
nervous system | 1.16e-28 | 75 |
ectoderm-derived structure | 3.63e-26 | 95 |
ectoderm | 3.63e-26 | 95 |
presumptive ectoderm | 3.63e-26 | 95 |
neurectoderm | 1.51e-23 | 64 |
neural plate | 1.51e-23 | 64 |
presumptive neural plate | 1.51e-23 | 64 |
regional part of nervous system | 7.33e-23 | 54 |
ecto-epithelium | 2.52e-21 | 73 |
neural tube | 2.65e-21 | 52 |
neural rod | 2.65e-21 | 52 |
future spinal cord | 2.65e-21 | 52 |
neural keel | 2.65e-21 | 52 |
pre-chordal neural plate | 3.83e-20 | 49 |
anterior neural tube | 1.69e-18 | 40 |
brain | 5.11e-18 | 47 |
future brain | 5.11e-18 | 47 |
regional part of forebrain | 8.17e-18 | 39 |
forebrain | 8.17e-18 | 39 |
future forebrain | 8.17e-18 | 39 |
regional part of brain | 2.24e-17 | 46 |
gray matter | 4.02e-17 | 34 |
brain grey matter | 7.80e-14 | 29 |
regional part of telencephalon | 7.80e-14 | 29 |
telencephalon | 7.80e-14 | 29 |
structure with developmental contribution from neural crest | 2.60e-13 | 92 |
cerebral cortex | 2.21e-09 | 21 |
cerebral hemisphere | 2.21e-09 | 21 |
pallium | 2.21e-09 | 21 |
occipital lobe | 8.60e-09 | 10 |
visual cortex | 8.60e-09 | 10 |
neocortex | 8.60e-09 | 10 |
regional part of cerebral cortex | 1.47e-08 | 17 |