FFCP PHASE1:Mm9::chr2:53937900..53937952,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67874|HGNC=|MCL_coexpression_id=950|UniProt=Q9JJ72|association_with_transcript=10bp_to_ENSMUST00000100089,NM_023396,uc008jrp.1_5end|description=CAGE_peak_1_at_Rprm_5end|id=chr2:53937900..53937952,-|ontology_enrichment_celltype=CL:0000221!1.53e-16!44;CL:0000133!1.53e-16!44;CL:0002319!6.77e-16!43;CL:0000055!1.34e-13!50;CL:0000540!1.35e-13!33;CL:0000047!1.35e-13!33;CL:0000031!1.35e-13!33;CL:0000404!1.35e-13!33;CL:0000117!7.79e-13!23;CL:0000337!7.79e-13!23;CL:0000393!5.50e-12!39;CL:0000211!5.50e-12!39|ontology_enrichment_celltype_v019_2=CL:0000221,1.30e-17,44;CL:0000133,1.30e-17,44;CL:0002319,6.56e-17,43;CL:0000540,9.94e-15,33;CL:0000047,9.94e-15,33;CL:0000031,9.94e-15,33;CL:0000404,9.94e-15,33;CL:0000117,6.79e-14,23;CL:0000337,6.79e-14,23;CL:0000393,3.80e-13,39;CL:0000211,3.80e-13,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.23e-30!73;UBERON:0005743!2.23e-30!73;UBERON:0000073!8.86e-30!75;UBERON:0001016!8.86e-30!75;UBERON:0001049!6.06e-24!52;UBERON:0005068!6.06e-24!52;UBERON:0006241!6.06e-24!52;UBERON:0007135!6.06e-24!52;UBERON:0004121!6.29e-24!102;UBERON:0000924!6.29e-24!102;UBERON:0006601!6.29e-24!102;UBERON:0000033!5.36e-23!63;UBERON:0002346!1.26e-22!71;UBERON:0003075!1.26e-22!71;UBERON:0007284!1.26e-22!71;UBERON:0003056!1.93e-22!49;UBERON:0000955!7.84e-22!50;UBERON:0006238!7.84e-22!50;UBERON:0002780!1.28e-21!39;UBERON:0001890!1.28e-21!39;UBERON:0006240!1.28e-21!39;UBERON:0003080!1.35e-21!40;UBERON:0002616!2.47e-21!49;UBERON:0002020!2.34e-20!34;UBERON:0002791!3.08e-17!29;UBERON:0003528!3.08e-17!29;UBERON:0001893!3.08e-17!29;UBERON:0000956!5.32e-14!21;UBERON:0001869!5.32e-14!21;UBERON:0000203!5.32e-14!21;UBERON:0002619!2.60e-11!17;UBERON:0000153!2.79e-11!94;UBERON:0007811!1.88e-10!86;UBERON:0002021!4.52e-08!10;UBERON:0000411!4.52e-08!10;UBERON:0001950!4.52e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.56e-32,73;UBERON:0001016,4.58e-31,75;UBERON:0002346,5.59e-26,64;UBERON:0003075,5.59e-26,64;UBERON:0007284,5.59e-26,64;UBERON:0000073,9.95e-26,54;UBERON:0004121,1.45e-25,95;UBERON:0000924,1.45e-25,95;UBERON:0006601,1.45e-25,95;UBERON:0001049,5.16e-25,52;UBERON:0005068,5.16e-25,52;UBERON:0006241,5.16e-25,52;UBERON:0007135,5.16e-25,52;UBERON:0003056,6.89e-24,49;UBERON:0002780,1.65e-23,39;UBERON:0001890,1.65e-23,39;UBERON:0006240,1.65e-23,39;UBERON:0003080,1.74e-23,40;UBERON:0000955,3.64e-22,47;UBERON:0006238,3.64e-22,47;UBERON:0002020,3.96e-22,34;UBERON:0010371,7.89e-22,73;UBERON:0002616,1.25e-21,46;UBERON:0003528,1.03e-18,29;UBERON:0002791,1.03e-18,29;UBERON:0001893,1.03e-18,29;UBERON:0000956,3.60e-15,21;UBERON:0001869,3.60e-15,21;UBERON:0000203,3.60e-15,21;UBERON:0010314,5.15e-14,92;UBERON:0002619,3.16e-12,17;UBERON:0002021,1.10e-08,10;UBERON:0000411,1.10e-08,10;UBERON:0001950,1.10e-08,10|phase1_expression=64.3798365361272,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,4.67738095830884,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64383317748712,2.02753862439029,1.46837401729345,3.9119567217402,14.6076854774899,21.7489320907127,17.4986909166855,5.73944328663986,18.6878333674463,0,0,0,1.28629718017973,0,5.15672092277442,38.0354946416044,49.7251520515711,35.494558596346,16.9422266034566,5.33576877666684,0.899899717281399,0,0,19.4740071836963,24.974189845901,83.1590690713991,102.469507193753,95.0668825308247,31.992910253226,32.025938437984,49.8537552804863,42.9387710161699,40.4456266108409,2.20231761998777,9.95961237064464,8.44835932909339,35.2136388239618,37.3269585897831,40.6312429034273,4.74611098302348,36.5795696520592,31.1708425464693,44.7835449919975,36.7318936461686,75.4917755592467,0.530083353332288,2.49386148352392,0,0,0.679971333707751,0,0,0,1.96622188184453,0,0,0,55.2106205524588,0,0,0,0,0,0,1.02765491747154,0,0.148442139064825,3.46970653532272,0.913396434936424,1.38369298353635,1.3565037649736,1.64624189989987,0,0,0,0,0.323533699894818,0,0,1.86391761218122,0.878342391034642,0.83778682725382,0.255457055208591,0.11981512450592,0,0,5.39246301857362,6.8625090422794,14.3245961408665,30.9407289942252,27.872984849006,7.2725815595846,13.7905073607594,10.9986512958342,7.83763914843586,22.9977710174644,0.841767423545896,12.1012011955314,12.1848115349741,7.02242306240862,7.53524089178575,6.5995404176788,6.02134485338794,5.71580519814346,3.88055056108524,8.191583731448,9.26619792822314,20.9381837755099,10.7405908889512,5.28289773528636,1.39300866608867,1.4404749548556,5.57295947091781,0,0,0,0.621377317606506,0.234526059981096,0,0.946978942340841,0,0.462801338662135,0.232533944750408,0,0,0,0.492502392237286,0.0810688095458557,0,0.219550115291051,0,9.67333763394985,14.5095503454791,0,0,3.83918850963421,2.09013004674395,1.03093969057675,0.605050573870028,1.77902435075896,0.951128130562796,0,0.823494773620054,1.50801125280162,1.1937388322469,1.75467678407208,0,0.648414149624083,0.199141273254367,26.3638382324784,15.8805432527523,18.0332377076929,10.386217720111,9.11576689687841,8.34616256694791,1.89709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| ||
|EntrezGene=67874 | |||
|HGNC= | |||
|MCL_coexpression_id=950 | |||
|UniProt=Q9JJ72 | |||
|association_with_transcript=10bp_to_ENSMUST00000100089,NM_023396,uc008jrp.1_5end | |||
|description=CAGE_peak_1_at_Rprm_5end | |||
|id=chr2:53937900..53937952,- | |||
|ontology_enrichment_celltype=CL:0000221!1.53e-16!44;CL:0000133!1.53e-16!44;CL:0002319!6.77e-16!43;CL:0000055!1.34e-13!50;CL:0000540!1.35e-13!33;CL:0000047!1.35e-13!33;CL:0000031!1.35e-13!33;CL:0000404!1.35e-13!33;CL:0000117!7.79e-13!23;CL:0000337!7.79e-13!23;CL:0000393!5.50e-12!39;CL:0000211!5.50e-12!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.30e-17,44;CL:0000133,1.30e-17,44;CL:0002319,6.56e-17,43;CL:0000540,9.94e-15,33;CL:0000047,9.94e-15,33;CL:0000031,9.94e-15,33;CL:0000404,9.94e-15,33;CL:0000117,6.79e-14,23;CL:0000337,6.79e-14,23;CL:0000393,3.80e-13,39;CL:0000211,3.80e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.23e-30!73;UBERON:0005743!2.23e-30!73;UBERON:0000073!8.86e-30!75;UBERON:0001016!8.86e-30!75;UBERON:0001049!6.06e-24!52;UBERON:0005068!6.06e-24!52;UBERON:0006241!6.06e-24!52;UBERON:0007135!6.06e-24!52;UBERON:0004121!6.29e-24!102;UBERON:0000924!6.29e-24!102;UBERON:0006601!6.29e-24!102;UBERON:0000033!5.36e-23!63;UBERON:0002346!1.26e-22!71;UBERON:0003075!1.26e-22!71;UBERON:0007284!1.26e-22!71;UBERON:0003056!1.93e-22!49;UBERON:0000955!7.84e-22!50;UBERON:0006238!7.84e-22!50;UBERON:0002780!1.28e-21!39;UBERON:0001890!1.28e-21!39;UBERON:0006240!1.28e-21!39;UBERON:0003080!1.35e-21!40;UBERON:0002616!2.47e-21!49;UBERON:0002020!2.34e-20!34;UBERON:0002791!3.08e-17!29;UBERON:0003528!3.08e-17!29;UBERON:0001893!3.08e-17!29;UBERON:0000956!5.32e-14!21;UBERON:0001869!5.32e-14!21;UBERON:0000203!5.32e-14!21;UBERON:0002619!2.60e-11!17;UBERON:0000153!2.79e-11!94;UBERON:0007811!1.88e-10!86;UBERON:0002021!4.52e-08!10;UBERON:0000411!4.52e-08!10;UBERON:0001950!4.52e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.56e-32,73;UBERON:0001016,4.58e-31,75;UBERON:0002346,5.59e-26,64;UBERON:0003075,5.59e-26,64;UBERON:0007284,5.59e-26,64;UBERON:0000073,9.95e-26,54;UBERON:0004121,1.45e-25,95;UBERON:0000924,1.45e-25,95;UBERON:0006601,1.45e-25,95;UBERON:0001049,5.16e-25,52;UBERON:0005068,5.16e-25,52;UBERON:0006241,5.16e-25,52;UBERON:0007135,5.16e-25,52;UBERON:0003056,6.89e-24,49;UBERON:0002780,1.65e-23,39;UBERON:0001890,1.65e-23,39;UBERON:0006240,1.65e-23,39;UBERON:0003080,1.74e-23,40;UBERON:0000955,3.64e-22,47;UBERON:0006238,3.64e-22,47;UBERON:0002020,3.96e-22,34;UBERON:0010371,7.89e-22,73;UBERON:0002616,1.25e-21,46;UBERON:0003528,1.03e-18,29;UBERON:0002791,1.03e-18,29;UBERON:0001893,1.03e-18,29;UBERON:0000956,3.60e-15,21;UBERON:0001869,3.60e-15,21;UBERON:0000203,3.60e-15,21;UBERON:0010314,5.15e-14,92;UBERON:0002619,3.16e-12,17;UBERON:0002021,1.10e-08,10;UBERON:0000411,1.10e-08,10;UBERON:0001950,1.10e-08,10 | |||
|phase1_expression=64.3798365361272,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,4.67738095830884,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64383317748712,2.02753862439029,1.46837401729345,3.9119567217402,14.6076854774899,21.7489320907127,17.4986909166855,5.73944328663986,18.6878333674463,0,0,0,1.28629718017973,0,5.15672092277442,38.0354946416044,49.7251520515711,35.494558596346,16.9422266034566,5.33576877666684,0.899899717281399,0,0,19.4740071836963,24.974189845901,83.1590690713991,102.469507193753,95.0668825308247,31.992910253226,32.025938437984,49.8537552804863,42.9387710161699,40.4456266108409,2.20231761998777,9.95961237064464,8.44835932909339,35.2136388239618,37.3269585897831,40.6312429034273,4.74611098302348,36.5795696520592,31.1708425464693,44.7835449919975,36.7318936461686,75.4917755592467,0.530083353332288,2.49386148352392,0,0,0.679971333707751,0,0,0,1.96622188184453,0,0,0,55.2106205524588,0,0,0,0,0,0,1.02765491747154,0,0.148442139064825,3.46970653532272,0.913396434936424,1.38369298353635,1.3565037649736,1.64624189989987,0,0,0,0,0.323533699894818,0,0,1.86391761218122,0.878342391034642,0.83778682725382,0.255457055208591,0.11981512450592,0,0,5.39246301857362,6.8625090422794,14.3245961408665,30.9407289942252,27.872984849006,7.2725815595846,13.7905073607594,10.9986512958342,7.83763914843586,22.9977710174644,0.841767423545896,12.1012011955314,12.1848115349741,7.02242306240862,7.53524089178575,6.5995404176788,6.02134485338794,5.71580519814346,3.88055056108524,8.191583731448,9.26619792822314,20.9381837755099,10.7405908889512,5.28289773528636,1.39300866608867,1.4404749548556,5.57295947091781,0,0,0,0.621377317606506,0.234526059981096,0,0.946978942340841,0,0.462801338662135,0.232533944750408,0,0,0,0.492502392237286,0.0810688095458557,0,0.219550115291051,0,9.67333763394985,14.5095503454791,0,0,3.83918850963421,2.09013004674395,1.03093969057675,0.605050573870028,1.77902435075896,0.951128130562796,0,0.823494773620054,1.50801125280162,1.1937388322469,1.75467678407208,0,0.648414149624083,0.199141273254367,26.3638382324784,15.8805432527523,18.0332377076929,10.386217720111,9.11576689687841,8.34616256694791,1.89709611372772,0.295220295959204,0.31399745568275,0.123397163921801,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0.554259570499814,3.03186258832776,0.651859905768103,1.18821560042632,1.17345124144251,0.670025029767263,1.90434912708811,1.75620283072019,0.788175720530955,1.10732344824387,0.318909537314974,0.983179888294428,0.518054945597687,1.73578870297814,0,0,0,0,4.49541651965817,3.6335622843583,0,0,4.10160685241134,4.68526493155966,3.87762115919038,2.38968797952552,3.7875774594007,2.83076530788832,5.66734982344852,13.151513606009,8.69633111482352,17.9939937196212,2.6968616189571,1.95872164033981,2.11753047159649,9.23832688646199,2.65490276679926,8.25454162926937,10.5813244937663,9.8074641473067,6.79194353625777,3.07435147943927,2.06742634534577,1.09060118843252,1.78248689192361,2.84433082142234,2.10837217149998,3.09406629744561,13.2771446243977,9.54323798365944,23.1552043971131,47.1541477069503,29.4384787846174,22.831208653065,19.2522354104482,13.700922710157,0.938686832254841,0,1.32317038832977,0,0.968786560175433,0.542816324353403,0.954978752025092,0.164140899745061,0,2.59595422814714,0.170870880797853,3.714963623338,1.85194527369712,0.188368457004691,0.136694227721025,0,0.679913719975421,0.419854356970974,0.276399947608848,0,5.53587988766987,4.26970880966382,2.37611749807963,1.46361807210128,2.40198820120795,1.34864346384821,0.991841468704031,0,0.90730481304255,0.621339313086926,0,0.448549638131936,0,0.583353565032143,1.54991788173277,1.35164900392623,0.58678619322877,1.8228613878153,0,0,0.288030006257865,0,0.608175645870493,0.616265742988964,0.649604114888975,0.179026695667481,0.596044064343795,0.120195449519969,0.443068581523732,0,0,0.100826185136841,0.38983152295901,0.192423683280659,0.233753804363138,0,0.665957860122194,0.358855426437903,0.839423081820392,0.386379188064381,20.4573898241788,12.8206136987086,1.07184189539533,2.00628841614145,71.1587321697504,92.0650473014354,84.7885359890307,59.8049074556033,66.4530044177523,61.1869056885657,64.8021600222534,56.2901504030276,50.2988073972467,50.2227502399265,13.1809931431904,15.9609949360412,14.3416228833473,7.05009479498053,10.8998844566551,8.45680138870065,9.11211583986622,5.97501665992793,7.38114182061175,6.82282471762253,8.61829619626815,6.60192194851267,6.08669798554236,5.8262888688431,6.54764346093991,8.09699275181225,5.91010062318763,5.59436739344745,7.00546031365621,9.56792980873583,6.85738504770831,7.0990322463735,8.34526664815623,7.55801366488108,7.62285981364178,6.09225176820071,7.68297486065645,4.99832451731901,6.24698923690964,7.85599180320834,8.06718123244384,6.99381824866501,6.13846564754534,7.43696837692637,6.55882477335881,15.9878769880285,5.6143586026898,6.44613162144895,3.63447830930802,1.32354851471709,1.62307484934295 | |||
|short_description=p1@Rprm | |||
}} |
Revision as of 00:08, 14 September 2013
Short description: | p1@Rprm |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rprm_5end |
Coexpression cluster: | MCL_coexpression_mm9:950 |
Association with transcript: | 10bp_to_ENSMUST00000100089, NM_023396, uc008jrp.1_5end |
EntrezGene: | Rprm |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.30e-17 | 44 |
neurectodermal cell | 1.30e-17 | 44 |
neural cell | 6.56e-17 | 43 |
neuron | 9.94e-15 | 33 |
neuronal stem cell | 9.94e-15 | 33 |
neuroblast | 9.94e-15 | 33 |
electrically signaling cell | 9.94e-15 | 33 |
CNS neuron (sensu Vertebrata) | 6.79e-14 | 23 |
neuroblast (sensu Vertebrata) | 6.79e-14 | 23 |
electrically responsive cell | 3.80e-13 | 39 |
electrically active cell | 3.80e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.56e-32 | 73 |
nervous system | 4.58e-31 | 75 |
neurectoderm | 5.59e-26 | 64 |
neural plate | 5.59e-26 | 64 |
presumptive neural plate | 5.59e-26 | 64 |
regional part of nervous system | 9.95e-26 | 54 |
ectoderm-derived structure | 1.45e-25 | 95 |
ectoderm | 1.45e-25 | 95 |
presumptive ectoderm | 1.45e-25 | 95 |
neural tube | 5.16e-25 | 52 |
neural rod | 5.16e-25 | 52 |
future spinal cord | 5.16e-25 | 52 |
neural keel | 5.16e-25 | 52 |
pre-chordal neural plate | 6.89e-24 | 49 |
regional part of forebrain | 1.65e-23 | 39 |
forebrain | 1.65e-23 | 39 |
future forebrain | 1.65e-23 | 39 |
anterior neural tube | 1.74e-23 | 40 |
brain | 3.64e-22 | 47 |
future brain | 3.64e-22 | 47 |
gray matter | 3.96e-22 | 34 |
ecto-epithelium | 7.89e-22 | 73 |
regional part of brain | 1.25e-21 | 46 |
brain grey matter | 1.03e-18 | 29 |
regional part of telencephalon | 1.03e-18 | 29 |
telencephalon | 1.03e-18 | 29 |
cerebral cortex | 3.60e-15 | 21 |
cerebral hemisphere | 3.60e-15 | 21 |
pallium | 3.60e-15 | 21 |
structure with developmental contribution from neural crest | 5.15e-14 | 92 |
regional part of cerebral cortex | 3.16e-12 | 17 |
occipital lobe | 1.10e-08 | 10 |
visual cortex | 1.10e-08 | 10 |
neocortex | 1.10e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.