FFCP PHASE1:Mm9::chr5:123300176..123300187,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=80751|HGNC=|UniProt=Q99KR6|association_with_transcript=-9bp_to_ENSMUST00000031434,NM_030564,uc008zmp.1_5end|description=CAGE_peak_3_at_Rnf34_5end|id=chr5:123300176..123300187,+|ontology_enrichment_celltype=CL:0000117!3.61e-12!23;CL:0000337!3.61e-12!23;CL:0000221!1.18e-09!44;CL:0000133!1.18e-09!44;CL:0002319!2.60e-09!43;CL:0000540!6.75e-08!33;CL:0000047!6.75e-08!33;CL:0000031!6.75e-08!33;CL:0000404!6.75e-08!33;CL:0000055!2.47e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.30e-12,23;CL:0000337,3.30e-12,23;CL:0000221,1.27e-09,44;CL:0000133,1.27e-09,44;CL:0002319,2.79e-09,43;CL:0000540,7.36e-08,33;CL:0000047,7.36e-08,33;CL:0000031,7.36e-08,33;CL:0000404,7.36e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.76e-20!63;UBERON:0001049!3.58e-19!52;UBERON:0005068!3.58e-19!52;UBERON:0006241!3.58e-19!52;UBERON:0007135!3.58e-19!52;UBERON:0000073!5.04e-19!75;UBERON:0001016!5.04e-19!75;UBERON:0000955!1.42e-18!50;UBERON:0006238!1.42e-18!50;UBERON:0002346!1.45e-18!71;UBERON:0003075!1.45e-18!71;UBERON:0007284!1.45e-18!71;UBERON:0002616!2.27e-18!49;UBERON:0001017!2.28e-18!73;UBERON:0005743!2.28e-18!73;UBERON:0004121!1.51e-16!102;UBERON:0000924!1.51e-16!102;UBERON:0006601!1.51e-16!102;UBERON:0003056!1.51e-16!49;UBERON:0002020!7.25e-15!34;UBERON:0003080!4.59e-14!40;UBERON:0002780!1.15e-13!39;UBERON:0001890!1.15e-13!39;UBERON:0006240!1.15e-13!39;UBERON:0002791!2.67e-13!29;UBERON:0003528!2.67e-13!29;UBERON:0001893!2.67e-13!29;UBERON:0000956!1.72e-09!21;UBERON:0001869!1.72e-09!21;UBERON:0000203!1.72e-09!21;UBERON:0007811!5.78e-08!86;UBERON:0000153!6.88e-08!94;UBERON:0002619!1.20e-07!17;UBERON:0000025!6.02e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.98e-20,64;UBERON:0003075,1.98e-20,64;UBERON:0007284,1.98e-20,64;UBERON:0000073,3.32e-20,54;UBERON:0001049,3.08e-19,52;UBERON:0005068,3.08e-19,52;UBERON:0006241,3.08e-19,52;UBERON:0007135,3.08e-19,52;UBERON:0001016,5.11e-19,75;UBERON:0001017,2.32e-18,73;UBERON:0004121,1.14e-17,95;UBERON:0000924,1.14e-17,95;UBERON:0006601,1.14e-17,95;UBERON:0000955,5.08e-17,47;UBERON:0006238,5.08e-17,47;UBERON:0010371,5.81e-17,73;UBERON:0002616,8.09e-17,46;UBERON:0003056,1.33e-16,49;UBERON:0002020,6.46e-15,34;UBERON:0010314,2.35e-14,92;UBERON:0003080,4.12e-14,40;UBERON:0002780,1.03e-13,39;UBERON:0001890,1.03e-13,39;UBERON:0006240,1.03e-13,39;UBERON:0003528,2.41e-13,29;UBERON:0002791,2.41e-13,29;UBERON:0001893,2.41e-13,29;UBERON:0000956,1.60e-09,21;UBERON:0001869,1.60e-09,21;UBERON:0000203,1.60e-09,21;UBERON:0002619,1.14e-07,17;UBERON:0000025,5.46e-07,114|phase1_expression=3.52327463630547,2.44282785347553,1.81999695755814,1.51232105653415,1.50268718983904,1.00727563147134,1.63528848416868,1.54947988129892,0.703943610758334,1.17032263160997,0.513653904676515,0.398860794976682,0.513602189793617,0.874204024189974,0.666219523631325,2.22722794128809,4.89693314689703,1.57731082679119,1.23402990245165,0.84877930359606,5.01755411891312,1.09220046320974,1.30599894569468,1.91990907352088,1.14704640533585,1.14846392823004,1.29228598847722,1.72376986148711,1.90023419456374,1.51218077855958,1.55211357458713,0,1.84519436275371,0,2.88851619751275,0.831173226792462,1.22501613757421,2.92972141515835,4.6880120671428,4.71171369576418,5.29408339227913,4.78131839470912,3.88408282424923,1.88845226963366,2.93993100536592,1.46837401729345,2.34717403304412,3.70642765846759,4.39372365468944,3.4997381833371,2.37976916763116,1.43752564364972,2.01339127269284,0,0.672187598284928,1.54355661621568,0.286533439938757,0.515672092277442,4.65327859977075,4.23192783417626,5.07065122804943,1.69422266034566,3.55717918444456,1.7997994345628,1.97773272513395,1.4209602298922,1.79760066311043,1.92109152660777,3.83651565541367,5.53524347159932,3.36519938162211,2.57085885963423,5.07997644188711,4.89963196859816,5.94241920313065,3.67687514644008,3.30347642998166,4.72443150915195,5.37622866396852,5.67111037239834,6.12967212136145,4.68822033501084,5.30447698102624,3.37657566019008,4.12555268997387,2.35702868378934,4.12877874317399,2.60959224155421,3.86203585999239,2.34271836331035,1.15945795480671,1.72084775396277,0,1.61910957491345,1.94932925234301,0.896053774194671,2.10666630197628,1.70430322578058,0.779358013808606,0.35333957451034,3.38024207464033,0,0,0,0.649473123033642,0,1.51657333504435,1.48439043634778,1.8125651855302,1.63286352971307,2.25530924795977,1.82679286987285,1.38369298353635,1.50722640552623,1.17588707135705,2.38766523526383,2.47194967734374,2.16899035379867,1.76922110389975,1.13236794963186,1.76673214768315,1.45462575940567,1.86391761218122,4.09893115816166,4.39838084308256,1.78819938646014,1.55759661857696,1.19980546198682,1.65191295194984,3.44518470631092,2.28750301409313,4.02093926761166,4.17178368461463,5.11430914660661,4.98691306942944,4.38051410282946,1.2220723662038,1.61729061793121,2.27450482590307,1.89397670297827,3.3831315170303,2.75882525320168,3.42118046630164,3.61691562805716,3.6739709541717,2.43416068541215,2.717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| ||
|EntrezGene=80751 | |||
|HGNC= | |||
|UniProt=Q99KR6 | |||
|association_with_transcript=-9bp_to_ENSMUST00000031434,NM_030564,uc008zmp.1_5end | |||
|description=CAGE_peak_3_at_Rnf34_5end | |||
|id=chr5:123300176..123300187,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.61e-12!23;CL:0000337!3.61e-12!23;CL:0000221!1.18e-09!44;CL:0000133!1.18e-09!44;CL:0002319!2.60e-09!43;CL:0000540!6.75e-08!33;CL:0000047!6.75e-08!33;CL:0000031!6.75e-08!33;CL:0000404!6.75e-08!33;CL:0000055!2.47e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.30e-12,23;CL:0000337,3.30e-12,23;CL:0000221,1.27e-09,44;CL:0000133,1.27e-09,44;CL:0002319,2.79e-09,43;CL:0000540,7.36e-08,33;CL:0000047,7.36e-08,33;CL:0000031,7.36e-08,33;CL:0000404,7.36e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.76e-20!63;UBERON:0001049!3.58e-19!52;UBERON:0005068!3.58e-19!52;UBERON:0006241!3.58e-19!52;UBERON:0007135!3.58e-19!52;UBERON:0000073!5.04e-19!75;UBERON:0001016!5.04e-19!75;UBERON:0000955!1.42e-18!50;UBERON:0006238!1.42e-18!50;UBERON:0002346!1.45e-18!71;UBERON:0003075!1.45e-18!71;UBERON:0007284!1.45e-18!71;UBERON:0002616!2.27e-18!49;UBERON:0001017!2.28e-18!73;UBERON:0005743!2.28e-18!73;UBERON:0004121!1.51e-16!102;UBERON:0000924!1.51e-16!102;UBERON:0006601!1.51e-16!102;UBERON:0003056!1.51e-16!49;UBERON:0002020!7.25e-15!34;UBERON:0003080!4.59e-14!40;UBERON:0002780!1.15e-13!39;UBERON:0001890!1.15e-13!39;UBERON:0006240!1.15e-13!39;UBERON:0002791!2.67e-13!29;UBERON:0003528!2.67e-13!29;UBERON:0001893!2.67e-13!29;UBERON:0000956!1.72e-09!21;UBERON:0001869!1.72e-09!21;UBERON:0000203!1.72e-09!21;UBERON:0007811!5.78e-08!86;UBERON:0000153!6.88e-08!94;UBERON:0002619!1.20e-07!17;UBERON:0000025!6.02e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.98e-20,64;UBERON:0003075,1.98e-20,64;UBERON:0007284,1.98e-20,64;UBERON:0000073,3.32e-20,54;UBERON:0001049,3.08e-19,52;UBERON:0005068,3.08e-19,52;UBERON:0006241,3.08e-19,52;UBERON:0007135,3.08e-19,52;UBERON:0001016,5.11e-19,75;UBERON:0001017,2.32e-18,73;UBERON:0004121,1.14e-17,95;UBERON:0000924,1.14e-17,95;UBERON:0006601,1.14e-17,95;UBERON:0000955,5.08e-17,47;UBERON:0006238,5.08e-17,47;UBERON:0010371,5.81e-17,73;UBERON:0002616,8.09e-17,46;UBERON:0003056,1.33e-16,49;UBERON:0002020,6.46e-15,34;UBERON:0010314,2.35e-14,92;UBERON:0003080,4.12e-14,40;UBERON:0002780,1.03e-13,39;UBERON:0001890,1.03e-13,39;UBERON:0006240,1.03e-13,39;UBERON:0003528,2.41e-13,29;UBERON:0002791,2.41e-13,29;UBERON:0001893,2.41e-13,29;UBERON:0000956,1.60e-09,21;UBERON:0001869,1.60e-09,21;UBERON:0000203,1.60e-09,21;UBERON:0002619,1.14e-07,17;UBERON:0000025,5.46e-07,114 | |||
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| |||
|short_description=p3@Rnf34 | |||
}} |
Revision as of 06:21, 14 September 2013
Short description: | p3@Rnf34 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rnf34_5end |
Coexpression cluster: | NA |
Association with transcript: | -9bp_to_ENSMUST00000031434, NM_030564, uc008zmp.1_5end |
EntrezGene: | Rnf34 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.30e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.30e-12 | 23 |
ectodermal cell | 1.27e-09 | 44 |
neurectodermal cell | 1.27e-09 | 44 |
neural cell | 2.79e-09 | 43 |
neuron | 7.36e-08 | 33 |
neuronal stem cell | 7.36e-08 | 33 |
neuroblast | 7.36e-08 | 33 |
electrically signaling cell | 7.36e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.98e-20 | 64 |
neural plate | 1.98e-20 | 64 |
presumptive neural plate | 1.98e-20 | 64 |
regional part of nervous system | 3.32e-20 | 54 |
neural tube | 3.08e-19 | 52 |
neural rod | 3.08e-19 | 52 |
future spinal cord | 3.08e-19 | 52 |
neural keel | 3.08e-19 | 52 |
nervous system | 5.11e-19 | 75 |
central nervous system | 2.32e-18 | 73 |
ectoderm-derived structure | 1.14e-17 | 95 |
ectoderm | 1.14e-17 | 95 |
presumptive ectoderm | 1.14e-17 | 95 |
brain | 5.08e-17 | 47 |
future brain | 5.08e-17 | 47 |
ecto-epithelium | 5.81e-17 | 73 |
regional part of brain | 8.09e-17 | 46 |
pre-chordal neural plate | 1.33e-16 | 49 |
gray matter | 6.46e-15 | 34 |
structure with developmental contribution from neural crest | 2.35e-14 | 92 |
anterior neural tube | 4.12e-14 | 40 |
regional part of forebrain | 1.03e-13 | 39 |
forebrain | 1.03e-13 | 39 |
future forebrain | 1.03e-13 | 39 |
brain grey matter | 2.41e-13 | 29 |
regional part of telencephalon | 2.41e-13 | 29 |
telencephalon | 2.41e-13 | 29 |
cerebral cortex | 1.60e-09 | 21 |
cerebral hemisphere | 1.60e-09 | 21 |
pallium | 1.60e-09 | 21 |
regional part of cerebral cortex | 1.14e-07 | 17 |
tube | 5.46e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.