FFCP PHASE1:Mm9::chr9:95307659..95307695,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=54371|HGNC=|MCL_coexpression_id=986|UniProt=Q80WV3|association_with_transcript=0bp_to_ENSMUST00000036267,NM_018763,uc009raz.2_5end|description=CAGE_peak_1_at_Chst2_5end|id=chr9:95307659..95307695,-|ontology_enrichment_celltype=CL:0000221!1.85e-07!44;CL:0000133!1.85e-07!44;CL:0002319!4.50e-07!43|ontology_enrichment_celltype_v019_2=CL:0000221,1.67e-07,44;CL:0000133,1.67e-07,44;CL:0002319,4.09e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.21e-19!75;UBERON:0001016!3.21e-19!75;UBERON:0001017!3.83e-19!73;UBERON:0005743!3.83e-19!73;UBERON:0001049!5.81e-19!52;UBERON:0005068!5.81e-19!52;UBERON:0006241!5.81e-19!52;UBERON:0007135!5.81e-19!52;UBERON:0002346!2.55e-18!71;UBERON:0003075!2.55e-18!71;UBERON:0007284!2.55e-18!71;UBERON:0000955!2.68e-18!50;UBERON:0006238!2.68e-18!50;UBERON:0002616!9.14e-18!49;UBERON:0004121!1.93e-17!102;UBERON:0000924!1.93e-17!102;UBERON:0006601!1.93e-17!102;UBERON:0000033!6.14e-17!63;UBERON:0003080!1.40e-13!40;UBERON:0002020!1.84e-13!34;UBERON:0002780!4.09e-13!39;UBERON:0001890!4.09e-13!39;UBERON:0006240!4.09e-13!39;UBERON:0003056!7.33e-13!49;UBERON:0000153!7.45e-12!94;UBERON:0002791!1.51e-11!29;UBERON:0003528!1.51e-11!29;UBERON:0001893!1.51e-11!29;UBERON:0000475!7.97e-11!200;UBERON:0007811!8.35e-11!86;UBERON:0000956!9.56e-09!21;UBERON:0001869!9.56e-09!21;UBERON:0000203!9.56e-09!21;UBERON:0001264!1.27e-08!12;UBERON:0003922!1.27e-08!12;UBERON:0002114!1.27e-08!12;UBERON:0003923!1.27e-08!12;UBERON:0003924!1.27e-08!12;UBERON:0003921!1.27e-08!12;UBERON:0002619!5.49e-08!17;UBERON:0001045!1.32e-07!13;UBERON:0000479!5.19e-07!349|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.25e-20,54;UBERON:0001016,2.35e-19,75;UBERON:0001017,2.82e-19,73;UBERON:0001049,4.28e-19,52;UBERON:0005068,4.28e-19,52;UBERON:0006241,4.28e-19,52;UBERON:0007135,4.28e-19,52;UBERON:0000955,4.76e-17,47;UBERON:0006238,4.76e-17,47;UBERON:0002346,1.49e-16,64;UBERON:0003075,1.49e-16,64;UBERON:0007284,1.49e-16,64;UBERON:0002616,1.61e-16,46;UBERON:0004121,4.02e-15,95;UBERON:0000924,4.02e-15,95;UBERON:0006601,4.02e-15,95;UBERON:0010371,8.31e-14,73;UBERON:0003080,1.13e-13,40;UBERON:0002020,1.49e-13,34;UBERON:0002780,3.34e-13,39;UBERON:0001890,3.34e-13,39;UBERON:0006240,3.34e-13,39;UBERON:0003056,6.01e-13,49;UBERON:0010314,3.65e-12,92;UBERON:0003528,1.27e-11,29;UBERON:0002791,1.27e-11,29;UBERON:0001893,1.27e-11,29;UBERON:0000956,8.43e-09,21;UBERON:0001869,8.43e-09,21;UBERON:0000203,8.43e-09,21;UBERON:0001264,1.12e-08,12;UBERON:0002619,4.91e-08,17;UBERON:0000479,4.77e-07,349|phase1_expression=16.8156289460034,0,0,0,0,0.16787927191189,0,3.22808308603941,4.646027831005,16.6185813688615,12.3276937122364,12.1253681672911,0,0.611942816932982,0.333109761815663,0,0,0,0,0,5.78294373027274,0.0992909512008853,0,0.159992422793407,0.22940928106717,0,0,0,0,0,0,0,0,0,0.577703239502549,1.49611180822643,1.02084678131185,0,0,0,0,0,0,5.03587271902309,4.35920804243913,4.77221555620372,32.0780451182696,61.047043786525,92.7075691139471,75.0499410426734,52.4949081095109,96.314218124531,0,2.17608642603403,1.34437519656986,4.11615097657515,1.14613375975503,1.54701627683233,8.09265843438391,9.52183762689659,6.33831403506179,19.9918273920788,19.5644855144451,3.1496490104849,0,3.5524005747305,57.8228213300521,102.586287520855,8.08778976006126,10.3954572515402,8.83364837675805,33.1355141908412,28.0503047008549,4.5321595709533,4.2172007248024,10.1114066527102,23.1243350098716,19.6638500651189,22.1193407888991,12.3973110466382,14.6380229763855,16.6692278578163,20.1011759280994,12.380777420697,19.4053774676549,25.9273155216828,20.3591503542717,8.01517617048792,6.13382165998791,8.31287161174641,5.79728977403356,1.72084775396277,0,0,0,0,4.0728881838208,18.7473354835864,13.768658243952,18.3736578745377,27.4644668564527,19.2489716121477,2.54805239706646,21.3320010945999,0,0,0.505524445014783,2.51204535381932,1.03575153458869,9.64873903921361,10.0621489524359,9.43842982767638,11.3001593655469,10.7013074792362,11.5236932992991,19.6039882474294,5.93267922562497,1.15679485535929,2.65383165584962,6.30890714794896,4.41683036920787,4.363877278217,1.86391761218122,15.2246014446005,20.7352239745321,7.15279754584056,0.11981512450592,0,0,24.8652461412006,30.652540388848,21.7382029155255,33.5480937971094,41.9373350021742,32.4149349512914,45.7520361851077,8.45266719957625,5.10068579501381,1.26361379216837,2.73574412652416,5.46505860443356,10.3455946995063,7.56260945182467,5.42537344208574,6.93972291343544,4.22775276940004,7.12133106653939,10.8655415710387,7.11374376678379,8.88798576788751,10.5570674498369,10.7405908889512,8.89751197521913,13.5818344943645,11.5237996388448,6.17006227137329,0,0,0,4.14251545071004,3.28336483973535,4.14142741360334,5.20838418287463,2.75469924446365,2.31400669331067,0.930135779001631,4.02410102099429,1.98501082024188,3.45575684818309,2.13417703302824,2.35099547682982,1.31579988682799,1.09775057645525,2.01309628140558,48.7872680668775,39.0008480917488,5.28670052774077,0.5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| ||
|EntrezGene=54371 | |||
|HGNC= | |||
|MCL_coexpression_id=986 | |||
|UniProt=Q80WV3 | |||
|association_with_transcript=0bp_to_ENSMUST00000036267,NM_018763,uc009raz.2_5end | |||
|description=CAGE_peak_1_at_Chst2_5end | |||
|id=chr9:95307659..95307695,- | |||
|ontology_enrichment_celltype=CL:0000221!1.85e-07!44;CL:0000133!1.85e-07!44;CL:0002319!4.50e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.67e-07,44;CL:0000133,1.67e-07,44;CL:0002319,4.09e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.21e-19!75;UBERON:0001016!3.21e-19!75;UBERON:0001017!3.83e-19!73;UBERON:0005743!3.83e-19!73;UBERON:0001049!5.81e-19!52;UBERON:0005068!5.81e-19!52;UBERON:0006241!5.81e-19!52;UBERON:0007135!5.81e-19!52;UBERON:0002346!2.55e-18!71;UBERON:0003075!2.55e-18!71;UBERON:0007284!2.55e-18!71;UBERON:0000955!2.68e-18!50;UBERON:0006238!2.68e-18!50;UBERON:0002616!9.14e-18!49;UBERON:0004121!1.93e-17!102;UBERON:0000924!1.93e-17!102;UBERON:0006601!1.93e-17!102;UBERON:0000033!6.14e-17!63;UBERON:0003080!1.40e-13!40;UBERON:0002020!1.84e-13!34;UBERON:0002780!4.09e-13!39;UBERON:0001890!4.09e-13!39;UBERON:0006240!4.09e-13!39;UBERON:0003056!7.33e-13!49;UBERON:0000153!7.45e-12!94;UBERON:0002791!1.51e-11!29;UBERON:0003528!1.51e-11!29;UBERON:0001893!1.51e-11!29;UBERON:0000475!7.97e-11!200;UBERON:0007811!8.35e-11!86;UBERON:0000956!9.56e-09!21;UBERON:0001869!9.56e-09!21;UBERON:0000203!9.56e-09!21;UBERON:0001264!1.27e-08!12;UBERON:0003922!1.27e-08!12;UBERON:0002114!1.27e-08!12;UBERON:0003923!1.27e-08!12;UBERON:0003924!1.27e-08!12;UBERON:0003921!1.27e-08!12;UBERON:0002619!5.49e-08!17;UBERON:0001045!1.32e-07!13;UBERON:0000479!5.19e-07!349 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.25e-20,54;UBERON:0001016,2.35e-19,75;UBERON:0001017,2.82e-19,73;UBERON:0001049,4.28e-19,52;UBERON:0005068,4.28e-19,52;UBERON:0006241,4.28e-19,52;UBERON:0007135,4.28e-19,52;UBERON:0000955,4.76e-17,47;UBERON:0006238,4.76e-17,47;UBERON:0002346,1.49e-16,64;UBERON:0003075,1.49e-16,64;UBERON:0007284,1.49e-16,64;UBERON:0002616,1.61e-16,46;UBERON:0004121,4.02e-15,95;UBERON:0000924,4.02e-15,95;UBERON:0006601,4.02e-15,95;UBERON:0010371,8.31e-14,73;UBERON:0003080,1.13e-13,40;UBERON:0002020,1.49e-13,34;UBERON:0002780,3.34e-13,39;UBERON:0001890,3.34e-13,39;UBERON:0006240,3.34e-13,39;UBERON:0003056,6.01e-13,49;UBERON:0010314,3.65e-12,92;UBERON:0003528,1.27e-11,29;UBERON:0002791,1.27e-11,29;UBERON:0001893,1.27e-11,29;UBERON:0000956,8.43e-09,21;UBERON:0001869,8.43e-09,21;UBERON:0000203,8.43e-09,21;UBERON:0001264,1.12e-08,12;UBERON:0002619,4.91e-08,17;UBERON:0000479,4.77e-07,349 | |||
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| |||
|short_description=p1@Chst2 | |||
}} |
Revision as of 19:00, 14 September 2013
Short description: | p1@Chst2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Chst2_5end |
Coexpression cluster: | MCL_coexpression_mm9:986 |
Association with transcript: | 0bp_to_ENSMUST00000036267, NM_018763, uc009raz.2_5end |
EntrezGene: | Chst2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.67e-07 | 44 |
neurectodermal cell | 1.67e-07 | 44 |
neural cell | 4.09e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 5.25e-20 | 54 |
nervous system | 2.35e-19 | 75 |
central nervous system | 2.82e-19 | 73 |
neural tube | 4.28e-19 | 52 |
neural rod | 4.28e-19 | 52 |
future spinal cord | 4.28e-19 | 52 |
neural keel | 4.28e-19 | 52 |
brain | 4.76e-17 | 47 |
future brain | 4.76e-17 | 47 |
neurectoderm | 1.49e-16 | 64 |
neural plate | 1.49e-16 | 64 |
presumptive neural plate | 1.49e-16 | 64 |
regional part of brain | 1.61e-16 | 46 |
ectoderm-derived structure | 4.02e-15 | 95 |
ectoderm | 4.02e-15 | 95 |
presumptive ectoderm | 4.02e-15 | 95 |
ecto-epithelium | 8.31e-14 | 73 |
anterior neural tube | 1.13e-13 | 40 |
gray matter | 1.49e-13 | 34 |
regional part of forebrain | 3.34e-13 | 39 |
forebrain | 3.34e-13 | 39 |
future forebrain | 3.34e-13 | 39 |
pre-chordal neural plate | 6.01e-13 | 49 |
structure with developmental contribution from neural crest | 3.65e-12 | 92 |
brain grey matter | 1.27e-11 | 29 |
regional part of telencephalon | 1.27e-11 | 29 |
telencephalon | 1.27e-11 | 29 |
cerebral cortex | 8.43e-09 | 21 |
cerebral hemisphere | 8.43e-09 | 21 |
pallium | 8.43e-09 | 21 |
pancreas | 1.12e-08 | 12 |
regional part of cerebral cortex | 4.91e-08 | 17 |
tissue | 4.77e-07 | 349 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.