FFCP PHASE1:Mm9::chr11:86940610..86940635,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68729|HGNC=|MCL_coexpression_id=0|UniProt=Q6PCX9,Q5SX31|association_with_transcript=31bp_to_ENSMUST00000041282,NM_197987,uc007ktm.1,uc011ybw.1_5end|description=CAGE_peak_3_at_Trim37_5end|id=chr11:86940610..86940635,+|ontology_enrichment_celltype=CL:0000117!8.89e-08!23;CL:0000337!8.89e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,3.92e-08,23;CL:0000337,3.92e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.96e-18!73;UBERON:0005743!3.96e-18!73;UBERON:0001049!8.87e-18!52;UBERON:0005068!8.87e-18!52;UBERON:0006241!8.87e-18!52;UBERON:0007135!8.87e-18!52;UBERON:0000955!8.28e-17!50;UBERON:0006238!8.28e-17!50;UBERON:0000073!1.11e-16!75;UBERON:0001016!1.11e-16!75;UBERON:0002616!1.82e-16!49;UBERON:0000033!3.30e-16!63;UBERON:0003056!5.64e-14!49;UBERON:0002346!1.05e-13!71;UBERON:0003075!1.05e-13!71;UBERON:0007284!1.05e-13!71;UBERON:0003080!3.98e-13!40;UBERON:0002020!7.67e-13!34;UBERON:0002780!1.36e-12!39;UBERON:0001890!1.36e-12!39;UBERON:0006240!1.36e-12!39;UBERON:0007811!4.06e-12!86;UBERON:0000025!3.03e-11!114;UBERON:0002791!1.67e-10!29;UBERON:0003528!1.67e-10!29;UBERON:0001893!1.67e-10!29;UBERON:0000153!2.91e-10!94;UBERON:0004121!3.02e-10!102;UBERON:0000924!3.02e-10!102;UBERON:0006601!3.02e-10!102;UBERON:0004111!3.10e-09!122;UBERON:0000475!6.36e-09!200;UBERON:0000477!1.99e-08!154;UBERON:0000956!2.56e-07!21;UBERON:0001869!2.56e-07!21;UBERON:0000203!2.56e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.12e-20,54;UBERON:0002346,1.46e-19,64;UBERON:0003075,1.46e-19,64;UBERON:0007284,1.46e-19,64;UBERON:0001017,2.06e-19,73;UBERON:0001049,2.39e-19,52;UBERON:0005068,2.39e-19,52;UBERON:0006241,2.39e-19,52;UBERON:0007135,2.39e-19,52;UBERON:0001016,4.49e-18,75;UBERON:0000955,2.82e-16,47;UBERON:0006238,2.82e-16,47;UBERON:0002616,6.56e-16,46;UBERON:0003056,6.34e-15,49;UBERON:0010371,1.52e-14,73;UBERON:0002020,5.88e-14,34;UBERON:0003080,6.89e-14,40;UBERON:0004121,1.27e-13,95;UBERON:0000924,1.27e-13,95;UBERON:0006601,1.27e-13,95;UBERON:0002780,2.62e-13,39;UBERON:0001890,2.62e-13,39;UBERON:0006240,2.62e-13,39;UBERON:0003528,2.17e-11,29;UBERON:0002791,2.17e-11,29;UBERON:0001893,2.17e-11,29;UBERON:0000025,3.74e-11,114;UBERON:0004111,5.35e-09,122;UBERON:0011216,2.15e-08,194;UBERON:0010314,2.93e-08,92;UBERON:0000956,6.85e-08,21;UBERON:0001869,6.85e-08,21;UBERON:0000203,6.85e-08,21;UBERON:0002619,3.95e-07,17|phase1_expression=1.76163731815273,0.348975407639361,0,0,0.500895729946347,1.17515490338323,1.16806320297763,0.129123323441576,0.281577444303333,0,0.68487187290202,0.398860794976682,0,0.174840804837995,1.99865857089398,2.63217847606774,4.19737126876888,0.788655413395594,0.137114433605739,0,10.0351082378262,0.992909512008853,1.04479915655574,0.47997726838022,0.22940928106717,0.57423196411502,0,0.430942465371778,0.190023419456374,0.756090389279792,0.443461021310609,2.54012269383853,5.53558308826113,0,2.3108129580102,1.16364251750945,2.45003227514843,0,0,0,0.588231488031014,0,0,1.51076181570693,0.811015449756117,1.65192076945513,0,1.96222640742402,2.41654801007919,1.1665793944457,1.95980990275508,1.43752564364972,0,0,0,0.257259436035947,0,0.515672092277442,0.809265843438391,1.05798195854407,1.26766280701236,0.338844532069132,0,0,0,0,1.19840044207362,4.2264013585371,2.28117147078651,1.21505344498522,1.68259969081106,2.57085885963423,3.09215957332259,2.32732518508413,2.49198224647415,3.67687514644008,3.30347642998166,5.87361755191863,6.45147439676223,2.1101806036831,1.18933936683133,2.6045668527838,4.18774498502071,5.6276261003168,3.20876320331301,2.94628585473668,4.9830088279686,2.60959224155421,0.302904773332736,0.377857800533928,2.02905142091174,0,0.679971333707751,0.539703191637817,1.29955283489534,1.34408066129201,1.68533304158102,0.681721290312231,0.259786004602869,0.35333957451034,0.985903938436763,1.28326477414318,0,0,0.432982082022428,2.28023878927589,2.52762222507392,1.48439043634778,0.517875767294343,0.593768556259299,0.867426633830679,0,0.691846491768175,0.60289056221049,0.470354828542819,0.376999773989026,0.494389935468748,0.144599356919912,0.884610551949874,0.808834249737046,1.32504911076236,0.969750506270444,0,3.22058876712702,3.56059401582874,0.255457055208591,0.599075622529601,0.599902730993408,0.889491589511453,3.44518470631092,5.94750783664214,3.39266750704734,2.9550134432687,3.58001640262463,3.94797284663164,3.89379031362618,1.12023300235348,0.870848794270651,1.0108910337347,0.420883711772948,3.3831315170303,3.21862946206862,2.16074555766419,1.20563854268572,2.58538696775046,1.2811372028485,2.71735001223214,1.03481348295606,0.862271971731369,1.51284864134255,0.351902248327898,0.657587197282725,0.834141747676794,0.348252166522167,1.4404749548556,1.59227413454795,0,0.772043721344145,0.568326998791185,1.86413195281952,1.17263029990548,0.720248245844059,0.710234206755631,0.983821158737019,1.3884040159864,0.697601834251224,1.3413670069981,0.934122738937356,0.987359099480883,0.164167464079095,0.729619285912702,0.730999937126662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| ||
|EntrezGene=68729 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q6PCX9,Q5SX31 | |||
|association_with_transcript=31bp_to_ENSMUST00000041282,NM_197987,uc007ktm.1,uc011ybw.1_5end | |||
|description=CAGE_peak_3_at_Trim37_5end | |||
|id=chr11:86940610..86940635,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.89e-08!23;CL:0000337!8.89e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.92e-08,23;CL:0000337,3.92e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.96e-18!73;UBERON:0005743!3.96e-18!73;UBERON:0001049!8.87e-18!52;UBERON:0005068!8.87e-18!52;UBERON:0006241!8.87e-18!52;UBERON:0007135!8.87e-18!52;UBERON:0000955!8.28e-17!50;UBERON:0006238!8.28e-17!50;UBERON:0000073!1.11e-16!75;UBERON:0001016!1.11e-16!75;UBERON:0002616!1.82e-16!49;UBERON:0000033!3.30e-16!63;UBERON:0003056!5.64e-14!49;UBERON:0002346!1.05e-13!71;UBERON:0003075!1.05e-13!71;UBERON:0007284!1.05e-13!71;UBERON:0003080!3.98e-13!40;UBERON:0002020!7.67e-13!34;UBERON:0002780!1.36e-12!39;UBERON:0001890!1.36e-12!39;UBERON:0006240!1.36e-12!39;UBERON:0007811!4.06e-12!86;UBERON:0000025!3.03e-11!114;UBERON:0002791!1.67e-10!29;UBERON:0003528!1.67e-10!29;UBERON:0001893!1.67e-10!29;UBERON:0000153!2.91e-10!94;UBERON:0004121!3.02e-10!102;UBERON:0000924!3.02e-10!102;UBERON:0006601!3.02e-10!102;UBERON:0004111!3.10e-09!122;UBERON:0000475!6.36e-09!200;UBERON:0000477!1.99e-08!154;UBERON:0000956!2.56e-07!21;UBERON:0001869!2.56e-07!21;UBERON:0000203!2.56e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.12e-20,54;UBERON:0002346,1.46e-19,64;UBERON:0003075,1.46e-19,64;UBERON:0007284,1.46e-19,64;UBERON:0001017,2.06e-19,73;UBERON:0001049,2.39e-19,52;UBERON:0005068,2.39e-19,52;UBERON:0006241,2.39e-19,52;UBERON:0007135,2.39e-19,52;UBERON:0001016,4.49e-18,75;UBERON:0000955,2.82e-16,47;UBERON:0006238,2.82e-16,47;UBERON:0002616,6.56e-16,46;UBERON:0003056,6.34e-15,49;UBERON:0010371,1.52e-14,73;UBERON:0002020,5.88e-14,34;UBERON:0003080,6.89e-14,40;UBERON:0004121,1.27e-13,95;UBERON:0000924,1.27e-13,95;UBERON:0006601,1.27e-13,95;UBERON:0002780,2.62e-13,39;UBERON:0001890,2.62e-13,39;UBERON:0006240,2.62e-13,39;UBERON:0003528,2.17e-11,29;UBERON:0002791,2.17e-11,29;UBERON:0001893,2.17e-11,29;UBERON:0000025,3.74e-11,114;UBERON:0004111,5.35e-09,122;UBERON:0011216,2.15e-08,194;UBERON:0010314,2.93e-08,92;UBERON:0000956,6.85e-08,21;UBERON:0001869,6.85e-08,21;UBERON:0000203,6.85e-08,21;UBERON:0002619,3.95e-07,17 | |||
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| |||
|short_description=p3@Trim37 | |||
}} |
Revision as of 21:20, 12 September 2013
Short description: | p3@Trim37 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Trim37_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 31bp_to_ENSMUST00000041282, NM_197987, uc007ktm.1, uc011ybw.1_5end |
EntrezGene: | Trim37 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.92e-08 | 23 |
neuroblast (sensu Vertebrata) | 3.92e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.12e-20 | 54 |
neurectoderm | 1.46e-19 | 64 |
neural plate | 1.46e-19 | 64 |
presumptive neural plate | 1.46e-19 | 64 |
central nervous system | 2.06e-19 | 73 |
neural tube | 2.39e-19 | 52 |
neural rod | 2.39e-19 | 52 |
future spinal cord | 2.39e-19 | 52 |
neural keel | 2.39e-19 | 52 |
nervous system | 4.49e-18 | 75 |
brain | 2.82e-16 | 47 |
future brain | 2.82e-16 | 47 |
regional part of brain | 6.56e-16 | 46 |
pre-chordal neural plate | 6.34e-15 | 49 |
ecto-epithelium | 1.52e-14 | 73 |
gray matter | 5.88e-14 | 34 |
anterior neural tube | 6.89e-14 | 40 |
ectoderm-derived structure | 1.27e-13 | 95 |
ectoderm | 1.27e-13 | 95 |
presumptive ectoderm | 1.27e-13 | 95 |
regional part of forebrain | 2.62e-13 | 39 |
forebrain | 2.62e-13 | 39 |
future forebrain | 2.62e-13 | 39 |
brain grey matter | 2.17e-11 | 29 |
regional part of telencephalon | 2.17e-11 | 29 |
telencephalon | 2.17e-11 | 29 |
tube | 3.74e-11 | 114 |
anatomical conduit | 5.35e-09 | 122 |
organ system subdivision | 2.15e-08 | 194 |
structure with developmental contribution from neural crest | 2.93e-08 | 92 |
cerebral cortex | 6.85e-08 | 21 |
cerebral hemisphere | 6.85e-08 | 21 |
pallium | 6.85e-08 | 21 |
regional part of cerebral cortex | 3.95e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.