FFCP PHASE1:Mm9::chr1:46910454..46910475,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=227059|HGNC=|MCL_coexpression_id=2|UniProt=Q6P5F6|association_with_transcript=-100bp_to_NM_172653,uc007axc.1_5end|description=CAGE_peak_2_at_Slc39a10_5end|id=chr1:46910454..46910475,-|ontology_enrichment_celltype=CL:0000393!3.53e-10!39;CL:0000211!3.53e-10!39;CL:0000540!7.13e-10!33;CL:0000047!7.13e-10!33;CL:0000031!7.13e-10!33;CL:0000404!7.13e-10!33;CL:0000055!9.59e-08!50;CL:0002319!2.31e-07!43;CL:0000221!3.50e-07!44;CL:0000133!3.50e-07!44;CL:0000117!8.93e-07!23;CL:0000337!8.93e-07!23|ontology_enrichment_celltype_v019_2=CL:0000393,6.41e-11,39;CL:0000211,6.41e-11,39;CL:0000540,1.59e-10,33;CL:0000047,1.59e-10,33;CL:0000031,1.59e-10,33;CL:0000404,1.59e-10,33;CL:0002319,3.65e-08,43;CL:0000221,1.06e-07,44;CL:0000133,1.06e-07,44;CL:0000117,1.99e-07,23;CL:0000337,1.99e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.11e-16!75;UBERON:0001016!3.11e-16!75;UBERON:0001017!1.30e-15!73;UBERON:0005743!1.30e-15!73;UBERON:0004121!4.32e-15!102;UBERON:0000924!4.32e-15!102;UBERON:0006601!4.32e-15!102;UBERON:0001049!9.22e-12!52;UBERON:0005068!9.22e-12!52;UBERON:0006241!9.22e-12!52;UBERON:0007135!9.22e-12!52;UBERON:0002616!2.41e-11!49;UBERON:0000955!4.61e-11!50;UBERON:0006238!4.61e-11!50;UBERON:0002346!1.04e-10!71;UBERON:0003075!1.04e-10!71;UBERON:0007284!1.04e-10!71;UBERON:0002020!2.79e-10!34;UBERON:0003080!7.67e-10!40;UBERON:0000033!9.16e-10!63;UBERON:0003056!1.74e-09!49;UBERON:0002780!2.11e-09!39;UBERON:0001890!2.11e-09!39;UBERON:0006240!2.11e-09!39;UBERON:0002791!1.38e-08!29;UBERON:0003528!1.38e-08!29;UBERON:0001893!1.38e-08!29;UBERON:0002021!3.92e-08!10;UBERON:0000411!3.92e-08!10;UBERON:0001950!3.92e-08!10;UBERON:0000153!3.54e-07!94;UBERON:0000468!9.32e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.16e-18,75;UBERON:0004121,2.47e-17,95;UBERON:0000924,2.47e-17,95;UBERON:0006601,2.47e-17,95;UBERON:0001017,4.24e-17,73;UBERON:0000073,1.30e-14,54;UBERON:0010371,1.88e-14,73;UBERON:0002346,4.58e-13,64;UBERON:0003075,4.58e-13,64;UBERON:0007284,4.58e-13,64;UBERON:0001049,4.63e-13,52;UBERON:0005068,4.63e-13,52;UBERON:0006241,4.63e-13,52;UBERON:0007135,4.63e-13,52;UBERON:0002020,1.60e-11,34;UBERON:0003080,5.14e-11,40;UBERON:0002616,8.58e-11,46;UBERON:0002780,1.65e-10,39;UBERON:0001890,1.65e-10,39;UBERON:0006240,1.65e-10,39;UBERON:0000955,3.03e-10,47;UBERON:0006238,3.03e-10,47;UBERON:0003056,1.02e-09,49;UBERON:0003528,1.47e-09,29;UBERON:0002791,1.47e-09,29;UBERON:0001893,1.47e-09,29;UBERON:0002021,3.25e-09,10;UBERON:0000411,3.25e-09,10;UBERON:0001950,3.25e-09,10;UBERON:0010314,2.28e-08,92;UBERON:0000922,5.82e-07,320;UBERON:0000956,6.99e-07,21;UBERON:0001869,6.99e-07,21;UBERON:0000203,6.99e-07,21;UBERON:0002619,7.21e-07,17|phase1_expression=0.960893082628764,0,0,0,0,0.16787927191189,0,0.129123323441576,0.422366166455,1.17032263160997,0.856089841127525,0.558405112967355,0.171200729931206,0,0,0,0,0.157731082679119,0,0.42438965179803,2.04103896362567,0.595745707205312,0.522399578277871,0,0.22940928106717,0,0,0,0,0.252030129759931,0.221730510655305,0,0.61506478758457,0,0,0.166234645358492,0,0,0,0,0,0,0,1.1330713617802,1.01376931219515,2.0190142737785,1.56478268869608,0.218025156380447,0.219686182734472,1.94429899074283,0.279972843250725,0,0,0,0,1.80081605225163,1.14613375975503,1.54701627683233,2.42779753031517,4.23192783417626,3.1691570175309,1.0165335962074,0.889294796111139,0,0,0,0.299600110518405,0.384218305321555,1.24427534770173,0.405017814995072,1.47227472945967,1.42825492201902,1.32521124570968,1.34739879136449,0.958454710182364,0,6.60695285996332,3.83062014255563,4.30098293117482,3.29715719325485,4.20843160571084,3.64639359389732,2.79182999001381,1.68828783009504,3.51435969886663,6.18720029494702,4.12877874317399,4.47358669980721,1.66597625333005,2.34271836331035,0.289864488701678,0.860423876981386,0,0,0,0,0.561777680527007,0.681721290312231,0.259786004602869,0.35333957451034,0.704217098883403,1.28326477414318,0,0,0.216491041011214,0,0.505524445014783,0.34255163915718,0.517875767294343,0.445326417194474,1.73485326766136,0,0.922461989024234,0.452167921657868,1.05829836422134,0.125666591329675,0,0.144599356919912,0,1.13236794963186,0,1.45462575940567,0,1.46390398505774,0.628340120440365,0,0.718890747035522,0,0.508280908292259,2.99581278809645,2.74500361691176,0.376963056338593,22.2495129846114,25.8272611903634,2.49345653471472,5.19172041816825,2.03678727700633,0.746441823660558,1.26361379216837,0.210441855886474,3.90361328888111,1.83921683546778,1.26043490863744,1.05493372485001,1.56483948048054,0.896796041993948,0.749613796477831,0.776110112217047,3.01795190105979,2.08016688184601,2.81521798662318,2.84954452155847,2.78047249225598,1.74126083261083,2.88094990971121,4.17971960318836,0,0,0.568326998791185,2.69263504296152,2.34526059981096,1.08037236876609,2.84093682702252,0.983821158737019,0.617068451549513,1.62773761325285,0.536546802799238,0.583826711835847,1.15191894939436,0.656669856316381,0.810688095458557,0.584799949701329,0.43910023058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| ||
|EntrezGene=227059 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=Q6P5F6 | |||
|association_with_transcript=-100bp_to_NM_172653,uc007axc.1_5end | |||
|description=CAGE_peak_2_at_Slc39a10_5end | |||
|id=chr1:46910454..46910475,- | |||
|ontology_enrichment_celltype=CL:0000393!3.53e-10!39;CL:0000211!3.53e-10!39;CL:0000540!7.13e-10!33;CL:0000047!7.13e-10!33;CL:0000031!7.13e-10!33;CL:0000404!7.13e-10!33;CL:0000055!9.59e-08!50;CL:0002319!2.31e-07!43;CL:0000221!3.50e-07!44;CL:0000133!3.50e-07!44;CL:0000117!8.93e-07!23;CL:0000337!8.93e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,6.41e-11,39;CL:0000211,6.41e-11,39;CL:0000540,1.59e-10,33;CL:0000047,1.59e-10,33;CL:0000031,1.59e-10,33;CL:0000404,1.59e-10,33;CL:0002319,3.65e-08,43;CL:0000221,1.06e-07,44;CL:0000133,1.06e-07,44;CL:0000117,1.99e-07,23;CL:0000337,1.99e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.11e-16!75;UBERON:0001016!3.11e-16!75;UBERON:0001017!1.30e-15!73;UBERON:0005743!1.30e-15!73;UBERON:0004121!4.32e-15!102;UBERON:0000924!4.32e-15!102;UBERON:0006601!4.32e-15!102;UBERON:0001049!9.22e-12!52;UBERON:0005068!9.22e-12!52;UBERON:0006241!9.22e-12!52;UBERON:0007135!9.22e-12!52;UBERON:0002616!2.41e-11!49;UBERON:0000955!4.61e-11!50;UBERON:0006238!4.61e-11!50;UBERON:0002346!1.04e-10!71;UBERON:0003075!1.04e-10!71;UBERON:0007284!1.04e-10!71;UBERON:0002020!2.79e-10!34;UBERON:0003080!7.67e-10!40;UBERON:0000033!9.16e-10!63;UBERON:0003056!1.74e-09!49;UBERON:0002780!2.11e-09!39;UBERON:0001890!2.11e-09!39;UBERON:0006240!2.11e-09!39;UBERON:0002791!1.38e-08!29;UBERON:0003528!1.38e-08!29;UBERON:0001893!1.38e-08!29;UBERON:0002021!3.92e-08!10;UBERON:0000411!3.92e-08!10;UBERON:0001950!3.92e-08!10;UBERON:0000153!3.54e-07!94;UBERON:0000468!9.32e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.16e-18,75;UBERON:0004121,2.47e-17,95;UBERON:0000924,2.47e-17,95;UBERON:0006601,2.47e-17,95;UBERON:0001017,4.24e-17,73;UBERON:0000073,1.30e-14,54;UBERON:0010371,1.88e-14,73;UBERON:0002346,4.58e-13,64;UBERON:0003075,4.58e-13,64;UBERON:0007284,4.58e-13,64;UBERON:0001049,4.63e-13,52;UBERON:0005068,4.63e-13,52;UBERON:0006241,4.63e-13,52;UBERON:0007135,4.63e-13,52;UBERON:0002020,1.60e-11,34;UBERON:0003080,5.14e-11,40;UBERON:0002616,8.58e-11,46;UBERON:0002780,1.65e-10,39;UBERON:0001890,1.65e-10,39;UBERON:0006240,1.65e-10,39;UBERON:0000955,3.03e-10,47;UBERON:0006238,3.03e-10,47;UBERON:0003056,1.02e-09,49;UBERON:0003528,1.47e-09,29;UBERON:0002791,1.47e-09,29;UBERON:0001893,1.47e-09,29;UBERON:0002021,3.25e-09,10;UBERON:0000411,3.25e-09,10;UBERON:0001950,3.25e-09,10;UBERON:0010314,2.28e-08,92;UBERON:0000922,5.82e-07,320;UBERON:0000956,6.99e-07,21;UBERON:0001869,6.99e-07,21;UBERON:0000203,6.99e-07,21;UBERON:0002619,7.21e-07,17 | |||
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| |||
|short_description=p2@Slc39a10 | |||
}} |
Revision as of 20:27, 13 September 2013
Short description: | p2@Slc39a10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Slc39a10_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | -100bp_to_NM_172653, uc007axc.1_5end |
EntrezGene: | Slc39a10 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 6.41e-11 | 39 |
electrically active cell | 6.41e-11 | 39 |
neuron | 1.59e-10 | 33 |
neuronal stem cell | 1.59e-10 | 33 |
neuroblast | 1.59e-10 | 33 |
electrically signaling cell | 1.59e-10 | 33 |
neural cell | 3.65e-08 | 43 |
ectodermal cell | 1.06e-07 | 44 |
neurectodermal cell | 1.06e-07 | 44 |
CNS neuron (sensu Vertebrata) | 1.99e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.99e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.16e-18 | 75 |
ectoderm-derived structure | 2.47e-17 | 95 |
ectoderm | 2.47e-17 | 95 |
presumptive ectoderm | 2.47e-17 | 95 |
central nervous system | 4.24e-17 | 73 |
regional part of nervous system | 1.30e-14 | 54 |
ecto-epithelium | 1.88e-14 | 73 |
neurectoderm | 4.58e-13 | 64 |
neural plate | 4.58e-13 | 64 |
presumptive neural plate | 4.58e-13 | 64 |
neural tube | 4.63e-13 | 52 |
neural rod | 4.63e-13 | 52 |
future spinal cord | 4.63e-13 | 52 |
neural keel | 4.63e-13 | 52 |
gray matter | 1.60e-11 | 34 |
anterior neural tube | 5.14e-11 | 40 |
regional part of brain | 8.58e-11 | 46 |
regional part of forebrain | 1.65e-10 | 39 |
forebrain | 1.65e-10 | 39 |
future forebrain | 1.65e-10 | 39 |
brain | 3.03e-10 | 47 |
future brain | 3.03e-10 | 47 |
pre-chordal neural plate | 1.02e-09 | 49 |
brain grey matter | 1.47e-09 | 29 |
regional part of telencephalon | 1.47e-09 | 29 |
telencephalon | 1.47e-09 | 29 |
occipital lobe | 3.25e-09 | 10 |
visual cortex | 3.25e-09 | 10 |
neocortex | 3.25e-09 | 10 |
structure with developmental contribution from neural crest | 2.28e-08 | 92 |
embryo | 5.82e-07 | 320 |
cerebral cortex | 6.99e-07 | 21 |
cerebral hemisphere | 6.99e-07 | 21 |
pallium | 6.99e-07 | 21 |
regional part of cerebral cortex | 7.21e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.