FFCP PHASE1:Mm9::chr2:29979997..29980029,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=227693|HGNC=|MCL_coexpression_id=1|UniProt=Q80ZJ6,Q3U297|association_with_transcript=-23bp_to_ENSMUST00000044751,NM_178694,uc008jbf.1,uc008jbg.1,uc008jbh.1_5end|description=CAGE_peak_2_at_Zer1_5end|id=chr2:29979997..29980029,-|ontology_enrichment_celltype=CL:0000221!1.20e-13!44;CL:0000133!1.20e-13!44;CL:0002319!1.97e-13!43;CL:0000540!1.65e-11!33;CL:0000047!1.65e-11!33;CL:0000031!1.65e-11!33;CL:0000404!1.65e-11!33;CL:0000055!1.68e-11!50;CL:0000393!2.54e-10!39;CL:0000211!2.54e-10!39;CL:0000117!1.69e-09!23;CL:0000337!1.69e-09!23|ontology_enrichment_celltype_v019_2=CL:0000221,1.20e-13,44;CL:0000133,1.20e-13,44;CL:0002319,1.97e-13,43;CL:0000540,1.65e-11,33;CL:0000047,1.65e-11,33;CL:0000031,1.65e-11,33;CL:0000404,1.65e-11,33;CL:0000393,2.54e-10,39;CL:0000211,2.54e-10,39;CL:0000117,1.69e-09,23;CL:0000337,1.69e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.72e-32!73;UBERON:0005743!5.72e-32!73;UBERON:0000073!1.57e-29!75;UBERON:0001016!1.57e-29!75;UBERON:0001049!1.27e-24!52;UBERON:0005068!1.27e-24!52;UBERON:0006241!1.27e-24!52;UBERON:0007135!1.27e-24!52;UBERON:0004121!1.30e-24!102;UBERON:0000924!1.30e-24!102;UBERON:0006601!1.30e-24!102;UBERON:0000955!4.21e-24!50;UBERON:0006238!4.21e-24!50;UBERON:0002616!1.59e-23!49;UBERON:0000033!9.14e-23!63;UBERON:0002346!4.58e-22!71;UBERON:0003075!4.58e-22!71;UBERON:0007284!4.58e-22!71;UBERON:0003080!2.00e-17!40;UBERON:0002780!7.67e-17!39;UBERON:0001890!7.67e-17!39;UBERON:0006240!7.67e-17!39;UBERON:0003056!5.05e-16!49;UBERON:0002020!6.64e-16!34;UBERON:0002791!1.67e-13!29;UBERON:0003528!1.67e-13!29;UBERON:0001893!1.67e-13!29;UBERON:0004111!1.11e-12!122;UBERON:0007811!1.20e-12!86;UBERON:0000025!3.04e-12!114;UBERON:0000153!1.21e-11!94;UBERON:0000956!4.59e-11!21;UBERON:0001869!4.59e-11!21;UBERON:0000203!4.59e-11!21;UBERON:0002619!3.98e-09!17;UBERON:0003076!7.67e-08!12;UBERON:0003057!7.67e-08!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.71e-32,73;UBERON:0001016,1.57e-29,75;UBERON:0000073,3.34e-26,54;UBERON:0004121,6.68e-26,95;UBERON:0000924,6.68e-26,95;UBERON:0006601,6.68e-26,95;UBERON:0001049,1.27e-24,52;UBERON:0005068,1.27e-24,52;UBERON:0006241,1.27e-24,52;UBERON:0007135,1.27e-24,52;UBERON:0002346,5.23e-24,64;UBERON:0003075,5.23e-24,64;UBERON:0007284,5.23e-24,64;UBERON:0010314,4.30e-22,92;UBERON:0000955,7.02e-22,47;UBERON:0006238,7.02e-22,47;UBERON:0010371,1.45e-21,73;UBERON:0002616,2.58e-21,46;UBERON:0003080,2.00e-17,40;UBERON:0002780,7.66e-17,39;UBERON:0001890,7.66e-17,39;UBERON:0006240,7.66e-17,39;UBERON:0003056,5.05e-16,49;UBERON:0002020,6.64e-16,34;UBERON:0003528,1.67e-13,29;UBERON:0002791,1.67e-13,29;UBERON:0001893,1.67e-13,29;UBERON:0004111,1.11e-12,122;UBERON:0000025,3.04e-12,114;UBERON:0000956,4.58e-11,21;UBERON:0001869,4.58e-11,21;UBERON:0000203,4.58e-11,21;UBERON:0002619,3.98e-09,17;UBERON:0003076,7.67e-08,12;UBERON:0003057,7.67e-08,12|phase1_expression=12.0111635328595,4.53668029931169,3.18499467572675,2.72217790176147,2.50447864973174,2.85394762250213,1.16806320297763,6.58528949552039,1.12630977721333,0.70219357896598,1.02730780935303,0.957265907944037,4.62241970814255,8.13009742496676,4.66353666541928,2.02475267389826,3.49780939064073,2.05050407482854,3.15363197293199,3.81950686618227,10.6304112688837,2.6808556824239,1.56719873483361,2.23989391910769,1.60586496747019,1.72269589234506,5.1691439539089,1.50829862880122,1.71021077510736,2.77233142735924,1.33038306393183,1.27006134691926,3.07532393792285,0,2.59966457776147,1.49611180822643,1.02084678131185,5.4409111995798,1.5626706890476,3.66466620781659,8.82347232046521,8.87959130445979,4.36959317728038,5.79125362687656,7.19776211658553,4.22157529971868,26.6013057078333,18.9681886050988,20.2111288115714,15.748821825017,8.81914456239784,14.3752564364972,2.85230430298152,6.5282592781021,4.7053131879945,3.60163210450326,10.0286703978565,8.76642556871652,11.1274053472779,4.23192783417626,10.1413024560989,5.42151251310611,9.78224275722253,6.29929802096979,4.94433181283487,7.104801149461,13.7816050838466,23.0530983192933,15.3460626216547,15.3906769698127,13.6711224878398,16.8534080798244,16.1234034894678,8.94182834269164,7.57179221044067,14.7075005857603,26.4278114398533,25.5374676170375,25.8058975870489,10.5509030184155,6.95306091378313,11.9810075228055,23.7305549151174,19.6966913511088,25.6701056265041,15.9099436155781,12.6710795911202,13.6071595452469,1.8931548333296,2.19157524309678,6.66688324013859,1.72084775396277,1.3599426674155,3.77792234146472,7.79731700937203,7.6164570806547,6.46044332606059,4.60161870960756,4.1565760736459,3.5333957451034,9.71819596459095,11.5493829672886,17.8363667794652,14.2213340630666,0.649473123033642,0.253359865475099,1.51657333504435,4.79572294820052,3.36619248741323,9.94562331734326,5.37804512975021,1.82679286987285,5.5347719341454,4.82312449768392,6.23220147819235,9.80199412371469,7.91023896749996,10.2665543413137,4.42305275974937,8.7354098971601,6.8460870722722,5.33362778448744,0,21.6657789788545,22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| ||
|EntrezGene=227693 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q80ZJ6,Q3U297 | |||
|association_with_transcript=-23bp_to_ENSMUST00000044751,NM_178694,uc008jbf.1,uc008jbg.1,uc008jbh.1_5end | |||
|description=CAGE_peak_2_at_Zer1_5end | |||
|id=chr2:29979997..29980029,- | |||
|ontology_enrichment_celltype=CL:0000221!1.20e-13!44;CL:0000133!1.20e-13!44;CL:0002319!1.97e-13!43;CL:0000540!1.65e-11!33;CL:0000047!1.65e-11!33;CL:0000031!1.65e-11!33;CL:0000404!1.65e-11!33;CL:0000055!1.68e-11!50;CL:0000393!2.54e-10!39;CL:0000211!2.54e-10!39;CL:0000117!1.69e-09!23;CL:0000337!1.69e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.20e-13,44;CL:0000133,1.20e-13,44;CL:0002319,1.97e-13,43;CL:0000540,1.65e-11,33;CL:0000047,1.65e-11,33;CL:0000031,1.65e-11,33;CL:0000404,1.65e-11,33;CL:0000393,2.54e-10,39;CL:0000211,2.54e-10,39;CL:0000117,1.69e-09,23;CL:0000337,1.69e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.72e-32!73;UBERON:0005743!5.72e-32!73;UBERON:0000073!1.57e-29!75;UBERON:0001016!1.57e-29!75;UBERON:0001049!1.27e-24!52;UBERON:0005068!1.27e-24!52;UBERON:0006241!1.27e-24!52;UBERON:0007135!1.27e-24!52;UBERON:0004121!1.30e-24!102;UBERON:0000924!1.30e-24!102;UBERON:0006601!1.30e-24!102;UBERON:0000955!4.21e-24!50;UBERON:0006238!4.21e-24!50;UBERON:0002616!1.59e-23!49;UBERON:0000033!9.14e-23!63;UBERON:0002346!4.58e-22!71;UBERON:0003075!4.58e-22!71;UBERON:0007284!4.58e-22!71;UBERON:0003080!2.00e-17!40;UBERON:0002780!7.67e-17!39;UBERON:0001890!7.67e-17!39;UBERON:0006240!7.67e-17!39;UBERON:0003056!5.05e-16!49;UBERON:0002020!6.64e-16!34;UBERON:0002791!1.67e-13!29;UBERON:0003528!1.67e-13!29;UBERON:0001893!1.67e-13!29;UBERON:0004111!1.11e-12!122;UBERON:0007811!1.20e-12!86;UBERON:0000025!3.04e-12!114;UBERON:0000153!1.21e-11!94;UBERON:0000956!4.59e-11!21;UBERON:0001869!4.59e-11!21;UBERON:0000203!4.59e-11!21;UBERON:0002619!3.98e-09!17;UBERON:0003076!7.67e-08!12;UBERON:0003057!7.67e-08!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.71e-32,73;UBERON:0001016,1.57e-29,75;UBERON:0000073,3.34e-26,54;UBERON:0004121,6.68e-26,95;UBERON:0000924,6.68e-26,95;UBERON:0006601,6.68e-26,95;UBERON:0001049,1.27e-24,52;UBERON:0005068,1.27e-24,52;UBERON:0006241,1.27e-24,52;UBERON:0007135,1.27e-24,52;UBERON:0002346,5.23e-24,64;UBERON:0003075,5.23e-24,64;UBERON:0007284,5.23e-24,64;UBERON:0010314,4.30e-22,92;UBERON:0000955,7.02e-22,47;UBERON:0006238,7.02e-22,47;UBERON:0010371,1.45e-21,73;UBERON:0002616,2.58e-21,46;UBERON:0003080,2.00e-17,40;UBERON:0002780,7.66e-17,39;UBERON:0001890,7.66e-17,39;UBERON:0006240,7.66e-17,39;UBERON:0003056,5.05e-16,49;UBERON:0002020,6.64e-16,34;UBERON:0003528,1.67e-13,29;UBERON:0002791,1.67e-13,29;UBERON:0001893,1.67e-13,29;UBERON:0004111,1.11e-12,122;UBERON:0000025,3.04e-12,114;UBERON:0000956,4.58e-11,21;UBERON:0001869,4.58e-11,21;UBERON:0000203,4.58e-11,21;UBERON:0002619,3.98e-09,17;UBERON:0003076,7.67e-08,12;UBERON:0003057,7.67e-08,12 | |||
|phase1_expression=12.0111635328595,4.53668029931169,3.18499467572675,2.72217790176147,2.50447864973174,2.85394762250213,1.16806320297763,6.58528949552039,1.12630977721333,0.70219357896598,1.02730780935303,0.957265907944037,4.62241970814255,8.13009742496676,4.66353666541928,2.02475267389826,3.49780939064073,2.05050407482854,3.15363197293199,3.81950686618227,10.6304112688837,2.6808556824239,1.56719873483361,2.23989391910769,1.60586496747019,1.72269589234506,5.1691439539089,1.50829862880122,1.71021077510736,2.77233142735924,1.33038306393183,1.27006134691926,3.07532393792285,0,2.59966457776147,1.49611180822643,1.02084678131185,5.4409111995798,1.5626706890476,3.66466620781659,8.82347232046521,8.87959130445979,4.36959317728038,5.79125362687656,7.19776211658553,4.22157529971868,26.6013057078333,18.9681886050988,20.2111288115714,15.748821825017,8.81914456239784,14.3752564364972,2.85230430298152,6.5282592781021,4.7053131879945,3.60163210450326,10.0286703978565,8.76642556871652,11.1274053472779,4.23192783417626,10.1413024560989,5.42151251310611,9.78224275722253,6.29929802096979,4.94433181283487,7.104801149461,13.7816050838466,23.0530983192933,15.3460626216547,15.3906769698127,13.6711224878398,16.8534080798244,16.1234034894678,8.94182834269164,7.57179221044067,14.7075005857603,26.4278114398533,25.5374676170375,25.8058975870489,10.5509030184155,6.95306091378313,11.9810075228055,23.7305549151174,19.6966913511088,25.6701056265041,15.9099436155781,12.6710795911202,13.6071595452469,1.8931548333296,2.19157524309678,6.66688324013859,1.72084775396277,1.3599426674155,3.77792234146472,7.79731700937203,7.6164570806547,6.46044332606059,4.60161870960756,4.1565760736459,3.5333957451034,9.71819596459095,11.5493829672886,17.8363667794652,14.2213340630666,0.649473123033642,0.253359865475099,1.51657333504435,4.79572294820052,3.36619248741323,9.94562331734326,5.37804512975021,1.82679286987285,5.5347719341454,4.82312449768392,6.23220147819235,9.80199412371469,7.91023896749996,10.2665543413137,4.42305275974937,8.7354098971601,6.8460870722722,5.33362778448744,0,21.6657789788545,22.2013509222262,3.0654846625031,3.95389910869537,1.79970819298022,3.17675567682662,18.7238299256028,13.7250180845588,6.03140890141749,19.9897968221118,26.338692105024,15.584103341967,19.4689515681309,12.4244023897386,5.47390670684409,9.09801930361229,7.78634866779954,2.86264974517948,4.82794419310293,4.86167750474443,6.32960234910003,10.3415478710018,8.58361925908494,10.026084527891,9.31332134660456,3.44908788692548,5.10586416453112,9.85326295318113,7.01426343768239,7.22922847986555,6.268538997399,5.14455341019859,6.17006227137329,0.702213187313235,2.05878325691772,2.27330799516474,3.52113813310353,4.45599513964083,4.50155153652537,6.39210786080068,7.87056926989615,6.78775296704464,5.34828072925938,5.633741429392,11.4430035519826,8.3925523455875,6.56669856316381,11.1064269077822,10.2339991197733,5.70830299756732,9.93127498826751,25.2347938276953,11.6282211988591,5.28670052774077,2.3800550999719,5.11891801284562,3.0190767341857,5.15469845288373,3.42861991859682,3.7804267453628,3.42406127002606,5.69434873853414,4.94096864172033,6.78605063760728,4.17808591286417,6.43381487493096,5.39291645192533,5.40345124686736,4.38110801159608,3.22435431620239,3.65595240351132,5.63538678365402,2.03651327845314,3.29719228184964,8.27602674705759,6.82954600941979,6.4948465111025,5.49495547444812,6.29325536001183,5.03969466048153,2.33583148002532,2.55526693647164,2.69834534861824,2.43432145666204,2.41177159752417,3.05551022137704,4.60313819921297,3.56697498905078,3.84385978463314,5.75072826109418,4.46569137202204,6.55279113540577,6.06189307073068,4.12614051100398,5.30687873499704,6.28160846566456,4.16881105895066,3.42226450528254,4.75286240170527,5.16318546234705,3.85264392116176,8.56957107189649,14.0496226457615,4.72905432318573,8.63712289630222,9.40783135079174,6.06294264448231,6.56202931090403,7.23245292907558,4.52373851817817,4.35124547054968,3.44234991113325,4.13905119457099,18.4633178485961,21.0981035865966,2.13115428989678,10.0988370881749,10.0962630213202,9.76096860741596,10.7711698866399,6.93009514062401,7.12955757063661,13.0215204162863,10.9298889452221,8.18316402151673,9.88219444866309,16.708708453934,7.2389443456217,10.6839362200353,13.3567306669932,10.2281476242972,5.30980553359851,2.6705869977048,4.83717691143602,4.71512699389745,4.72483028609236,4.91896236710284,8.26970538138308,6.18007340111759,6.06045543254026,6.32073515871632,1.05418608574999,7.21948802737308,18.3837387107046,5.40183282093931,6.98536892426874,10.502514716548,11.3497749531055,18.5503570306153,12.3411765451591,25.5750557256263,1.87737366450968,3.38931313382112,5.95426674748397,5.27636009412736,6.45857706783622,5.36785031860587,5.72987251215055,5.25250879184196,4.66369338607761,21.1384844291981,3.07567585436135,7.01715351074956,4.44466865687308,3.76736914009382,1.0935538217682,3.20289442489132,5.94924504978494,5.318155188299,7.46279858543889,2.86401185404534,3.95419991976419,5.48962561242491,4.4282189736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| |||
|short_description=p2@Zer1 | |||
}} |
Revision as of 23:40, 13 September 2013
Short description: | p2@Zer1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Zer1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -23bp_to_ENSMUST00000044751, NM_178694, uc008jbf.1, uc008jbg.1, uc008jbh.1_5end |
EntrezGene: | Zer1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.20e-13 | 44 |
neurectodermal cell | 1.20e-13 | 44 |
neural cell | 1.97e-13 | 43 |
neuron | 1.65e-11 | 33 |
neuronal stem cell | 1.65e-11 | 33 |
neuroblast | 1.65e-11 | 33 |
electrically signaling cell | 1.65e-11 | 33 |
electrically responsive cell | 2.54e-10 | 39 |
electrically active cell | 2.54e-10 | 39 |
CNS neuron (sensu Vertebrata) | 1.69e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.69e-09 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.