FFCP PHASE1:Hg19::chr9:120466493..120466510,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7099|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11850|TSSclassifier=S|UniProt=D1CS53,O00206|association_with_transcript=33bp_to_NM_138554,NR_024168,NR_024169,uc004bjz.2,uc004bka.2,uc004bkb.2_5end|description=CAGE_peak_5_at_TLR4_5end|id=chr9:120466493..120466510,+|ontology_enrichment_celltype=CL:0002057!3.22e-13!42;CL:0000860!1.18e-12!45;CL:0000766!2.67e-12!76;CL:0002194!9.06e-10!63;CL:0000576!9.06e-10!63;CL:0000040!9.06e-10!63;CL:0000559!9.06e-10!63;CL:0000839!5.50e-09!70;CL:0002009!7.63e-09!65;CL:0000557!1.44e-08!71|ontology_enrichment_celltype_v019=CL:0000860;1.48e-18;33!CL:0002057;1.48e-18;33!CL:0000473;3.25e-13;39!CL:0000234;3.25e-13;39!CL:0000576;2.38e-07;48!CL:0002334;3.62e-07;12|ontology_enrichment_celltype_v019_2=CL:0000860,7.23e-15,42;CL:0002057,7.23e-15,42;CL:0000473,1.14e-12,48;CL:0000234,1.14e-12,48;CL:0000766,8.52e-10,72;CL:0002194,2.98e-08,59;CL:0000576,2.98e-08,59;CL:0000040,2.98e-08,59;CL:0000559,2.98e-08,59;CL:0002009,1.28e-07,61;CL:0000839,1.96e-07,66;CL:0000557,3.71e-07,67;CL:0002334,4.42e-07,12;CL:0000136,8.12e-07,15|ontology_enrichment_development_v019=CL:0002057;3.11e-11;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.65e-22!115;UBERON:0002616!1.20e-14!59;UBERON:0000955!3.87e-14!69;UBERON:0006238!3.87e-14!69;UBERON:0001049!1.25e-13!57;UBERON:0005068!1.25e-13!57;UBERON:0006241!1.25e-13!57;UBERON:0007135!1.25e-13!57;UBERON:0005743!1.48e-12!86;UBERON:0001017!1.71e-12!82;UBERON:0003075!1.33e-11!86;UBERON:0007284!1.33e-11!86;UBERON:0002390!3.77e-10!102;UBERON:0003061!3.77e-10!102;UBERON:0002193!4.48e-10!112;UBERON:0003080!4.98e-10!42;UBERON:0000073!6.35e-10!94;UBERON:0001016!6.35e-10!94;UBERON:0002346!6.62e-10!90;UBERON:0000467!7.91e-10!625;UBERON:0002780!9.34e-10!41;UBERON:0001890!9.34e-10!41;UBERON:0006240!9.34e-10!41;UBERON:0000480!1.23e-09!626;UBERON:0000468!1.30e-09!659;UBERON:0001893!4.93e-09!34;UBERON:0002020!5.07e-09!34;UBERON:0003528!5.07e-09!34;UBERON:0002371!5.98e-09!80;UBERON:0002791!1.17e-08!33;UBERON:0003056!1.30e-08!61;UBERON:0002204!1.64e-08!167;UBERON:0001474!2.65e-08!86;UBERON:0001869!4.12e-08!32;UBERON:0004765!1.71e-07!101;UBERON:0001434!1.71e-07!101;UBERON:0000923!2.66e-07!604;UBERON:0005291!2.66e-07!604;UBERON:0006598!2.66e-07!604;UBERON:0002532!2.66e-07!604;UBERON:0002050!3.85e-07!605;UBERON:0005423!3.85e-07!605;UBERON:0000479!9.86e-07!787|ontology_enrichment_uberon_v019=UBERON:0001893;4.29e-09;34!UBERON:0003528;8.35e-09;34!UBERON:0002020;8.35e-09;34!UBERON:0002791;1.37e-08;32!UBERON:0001869;1.93e-08;32!UBERON:0001017;2.09e-08;75!UBERON:0002780;2.22e-08;41!UBERON:0001890;2.22e-08;41!UBERON:0000073;2.52e-08;53!UBERON:0002616;2.52e-08;53!UBERON:0002619;1.76e-07;22!UBERON:0000955;4.55e-07;68!UBERON:0000125;4.95e-07;9!UBERON:0002308;4.95e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.68e-22,114;UBERON:0000955,2.46e-16,68;UBERON:0006238,2.46e-16,68;UBERON:0001017,2.55e-15,81;UBERON:0001049,3.34e-15,56;UBERON:0005068,3.34e-15,56;UBERON:0006241,3.34e-15,56;UBERON:0007135,3.34e-15,56;UBERON:0000073,4.74e-14,53;UBERON:0002616,4.74e-14,53;UBERON:0003075,4.41e-13,82;UBERON:0007284,4.41e-13,82;UBERON:0001016,4.45e-13,89;UBERON:0002346,1.17e-11,86;UBERON:0002780,3.48e-11,41;UBERON:0001890,3.48e-11,41;UBERON:0003080,3.48e-11,41;UBERON:0006240,3.48e-11,41;UBERON:0001893,9.24e-11,34;UBERON:0003528,9.58e-11,34;UBERON:0002020,9.58e-11,34;UBERON:0002791,1.07e-09,32;UBERON:0001869,1.38e-09,32;UBERON:0003056,2.78e-09,61;UBERON:0002390,3.30e-09,98;UBERON:0003061,3.30e-09,98;UBERON:0010371,3.48e-09,104;UBERON:0010314,5.55e-09,132;UBERON:0002193,1.47e-08,108;UBERON:0004765,9.13e-08,90;UBERON:0001434,9.42e-08,100;UBERON:0002619,1.48e-07,22;UBERON:0002371,1.62e-07,76;UBERON:0001474,2.56e-07,82;UBERON:0000125,3.82e-07,9;UBERON:0002308,3.82e-07,9;UBERON:0002204,5.13e-07,167|phase1_expression=22.528119029549,17.7703434829516,21.2841150184916,16.0117277365009,9.83314407740033,19.1914475302081,0,0.631719873426831,1.04474251279935,0.245733936501509,0,0,0,1.11389717664042,1.98838425436749,1.34465029290355,0,0.730310090387373,0.487932798790507,0.61560529038394,0.408001382488506,0,0,0.958120975510189,0.502170558379211,0,0,0,0.393364276848904,0.767658796194425,0.619264493264304,0,0.30120591877825,0,0,0,1.17440175733939,1.10799081706375,1.40381113229099,0.868043482863407,0.671746422719773,0.971680998056939,0.257575567634187,1.74477886535478,1.88937971844405,2.66842467306598,5.34586784883075,2.87817521615278,3.71647645074124,8.91846416198666,6.66017836975662,5.43909128743746,8.96338769915208,6.45484683583826,5.41705946377367,3.57660445130949,1.36453075028923,2.47195832889593,5.20342617030534,6.73950956859797,6.39337125799041,5.27762080298746,4.3882004676759,2.55734850319616,21.7656928971438,18.1563271901165,26.1585344578141,5.7787193009051,7.82224377630302,8.03598725408932,12.7133895553007,21.3601028872788,23.1017542831846,0.2112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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7099 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11850 | |||
|TSSclassifier=S | |||
|UniProt=D1CS53,O00206 | |||
|association_with_transcript=33bp_to_NM_138554,NR_024168,NR_024169,uc004bjz.2,uc004bka.2,uc004bkb.2_5end | |||
|description=CAGE_peak_5_at_TLR4_5end | |||
|id=chr9:120466493..120466510,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.22e-13!42;CL:0000860!1.18e-12!45;CL:0000766!2.67e-12!76;CL:0002194!9.06e-10!63;CL:0000576!9.06e-10!63;CL:0000040!9.06e-10!63;CL:0000559!9.06e-10!63;CL:0000839!5.50e-09!70;CL:0002009!7.63e-09!65;CL:0000557!1.44e-08!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.48e-18;33!CL:0002057;1.48e-18;33!CL:0000473;3.25e-13;39!CL:0000234;3.25e-13;39!CL:0000576;2.38e-07;48!CL:0002334;3.62e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.23e-15,42;CL:0002057,7.23e-15,42;CL:0000473,1.14e-12,48;CL:0000234,1.14e-12,48;CL:0000766,8.52e-10,72;CL:0002194,2.98e-08,59;CL:0000576,2.98e-08,59;CL:0000040,2.98e-08,59;CL:0000559,2.98e-08,59;CL:0002009,1.28e-07,61;CL:0000839,1.96e-07,66;CL:0000557,3.71e-07,67;CL:0002334,4.42e-07,12;CL:0000136,8.12e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002057;3.11e-11;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.65e-22!115;UBERON:0002616!1.20e-14!59;UBERON:0000955!3.87e-14!69;UBERON:0006238!3.87e-14!69;UBERON:0001049!1.25e-13!57;UBERON:0005068!1.25e-13!57;UBERON:0006241!1.25e-13!57;UBERON:0007135!1.25e-13!57;UBERON:0005743!1.48e-12!86;UBERON:0001017!1.71e-12!82;UBERON:0003075!1.33e-11!86;UBERON:0007284!1.33e-11!86;UBERON:0002390!3.77e-10!102;UBERON:0003061!3.77e-10!102;UBERON:0002193!4.48e-10!112;UBERON:0003080!4.98e-10!42;UBERON:0000073!6.35e-10!94;UBERON:0001016!6.35e-10!94;UBERON:0002346!6.62e-10!90;UBERON:0000467!7.91e-10!625;UBERON:0002780!9.34e-10!41;UBERON:0001890!9.34e-10!41;UBERON:0006240!9.34e-10!41;UBERON:0000480!1.23e-09!626;UBERON:0000468!1.30e-09!659;UBERON:0001893!4.93e-09!34;UBERON:0002020!5.07e-09!34;UBERON:0003528!5.07e-09!34;UBERON:0002371!5.98e-09!80;UBERON:0002791!1.17e-08!33;UBERON:0003056!1.30e-08!61;UBERON:0002204!1.64e-08!167;UBERON:0001474!2.65e-08!86;UBERON:0001869!4.12e-08!32;UBERON:0004765!1.71e-07!101;UBERON:0001434!1.71e-07!101;UBERON:0000923!2.66e-07!604;UBERON:0005291!2.66e-07!604;UBERON:0006598!2.66e-07!604;UBERON:0002532!2.66e-07!604;UBERON:0002050!3.85e-07!605;UBERON:0005423!3.85e-07!605;UBERON:0000479!9.86e-07!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;4.29e-09;34!UBERON:0003528;8.35e-09;34!UBERON:0002020;8.35e-09;34!UBERON:0002791;1.37e-08;32!UBERON:0001869;1.93e-08;32!UBERON:0001017;2.09e-08;75!UBERON:0002780;2.22e-08;41!UBERON:0001890;2.22e-08;41!UBERON:0000073;2.52e-08;53!UBERON:0002616;2.52e-08;53!UBERON:0002619;1.76e-07;22!UBERON:0000955;4.55e-07;68!UBERON:0000125;4.95e-07;9!UBERON:0002308;4.95e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.68e-22,114;UBERON:0000955,2.46e-16,68;UBERON:0006238,2.46e-16,68;UBERON:0001017,2.55e-15,81;UBERON:0001049,3.34e-15,56;UBERON:0005068,3.34e-15,56;UBERON:0006241,3.34e-15,56;UBERON:0007135,3.34e-15,56;UBERON:0000073,4.74e-14,53;UBERON:0002616,4.74e-14,53;UBERON:0003075,4.41e-13,82;UBERON:0007284,4.41e-13,82;UBERON:0001016,4.45e-13,89;UBERON:0002346,1.17e-11,86;UBERON:0002780,3.48e-11,41;UBERON:0001890,3.48e-11,41;UBERON:0003080,3.48e-11,41;UBERON:0006240,3.48e-11,41;UBERON:0001893,9.24e-11,34;UBERON:0003528,9.58e-11,34;UBERON:0002020,9.58e-11,34;UBERON:0002791,1.07e-09,32;UBERON:0001869,1.38e-09,32;UBERON:0003056,2.78e-09,61;UBERON:0002390,3.30e-09,98;UBERON:0003061,3.30e-09,98;UBERON:0010371,3.48e-09,104;UBERON:0010314,5.55e-09,132;UBERON:0002193,1.47e-08,108;UBERON:0004765,9.13e-08,90;UBERON:0001434,9.42e-08,100;UBERON:0002619,1.48e-07,22;UBERON:0002371,1.62e-07,76;UBERON:0001474,2.56e-07,82;UBERON:0000125,3.82e-07,9;UBERON:0002308,3.82e-07,9;UBERON:0002204,5.13e-07,167 | |||
|phase1_expression=22.528119029549,17.7703434829516,21.2841150184916,16.0117277365009,9.83314407740033,19.1914475302081,0,0.631719873426831,1.04474251279935,0.245733936501509,0,0,0,1.11389717664042,1.98838425436749,1.34465029290355,0,0.730310090387373,0.487932798790507,0.61560529038394,0.408001382488506,0,0,0.958120975510189,0.502170558379211,0,0,0,0.393364276848904,0.767658796194425,0.619264493264304,0,0.30120591877825,0,0,0,1.17440175733939,1.10799081706375,1.40381113229099,0.868043482863407,0.671746422719773,0.971680998056939,0.257575567634187,1.74477886535478,1.88937971844405,2.66842467306598,5.34586784883075,2.87817521615278,3.71647645074124,8.91846416198666,6.66017836975662,5.43909128743746,8.96338769915208,6.45484683583826,5.41705946377367,3.57660445130949,1.36453075028923,2.47195832889593,5.20342617030534,6.73950956859797,6.39337125799041,5.27762080298746,4.3882004676759,2.55734850319616,21.7656928971438,18.1563271901165,26.1585344578141,5.7787193009051,7.82224377630302,8.03598725408932,12.7133895553007,21.3601028872788,23.1017542831846,0.211255286311942,0.212604299965044,0.209658645508376,1.34794357375794,1.05123824989054,1.28580469357664,0,0.19891667719909,0.182664153764634,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0.473554504088034,0,0,0,0,0,1.34140171940727,0.511450247374121,0.361439152384566,0.50133791063589,0.869079113764942,0,0.486634870302636,1.22895262313288,1.77383517970051,2.0202000709419,1.30979075497713,0,0,0.649094787309367,0,0.132957960518865,0.238490624305342,0,0,0.198762407366705,0.860234595106124,0.347140501607594,0.56530794192401,0,1.10047216776027,0.208994966536811,1.03366703667732,2.49036383880697,2.00832367658802,0.805658634218294,0.760272105718513,0.976248230192678,0.735326160691737,0,0.714397826272638,0,0.788280363383256,1.53316637465883,0,0.183201743930407,10.5424333948851,34.9002237733493,0,1.98788780678127,5.95163404823525,2.51577443545116,3.44203944898576,2.4826786753885,0.560677600142307,0,0.98667019366864,1.24484414159907,0.269421344139376,0.490385709340376,2.11900398702904,4.03323147135999,0.234321431833797,0.624320153660641,0.570471821544449,1.04614076386261,0.23486899728753,0,0,0.61246251376468,0,1.54988671763648,0,0,0,0,0,0,1.10825646193673,0.438977620880838,1.5324389789951,0.300476117813194,0.794025282120147,0.179389635688862,0.213557388818567,1.05965950579781,0.600182192168805,0.824420233907511,1.8034837803194,1.48893485065272,0.337552664482532,0.0974370051611986,0,0.644349290496095,3.07127507955743,0,0,0.508681776931463,0,0.272746120590835,0,0,0,0,0,0,0,1.56449532329816,0.643240938192885,0,14.8597736970233,7.21879481669586,0.118306800039844,0.337169380156203,0.241011029883482,0.772057809126758,0.217879444092406,0.237270619111097,0.539325232640658,0.196221465125346,0,0,0,0.4115740113314,0,0,0.982827216677626,2.36315962672562,0,0,1.71567810298526,0,0,0,0,0.325808305310325,0,7.21656710126366,0.463721619900307,5.51820862908362,0.144366447761074,1.38895653772983,0.761016608938393,0,0,0.984868024349589,0.468008530278475,0.445893486866185,0,0,0,4.29880908973672,0.581267877027924,0.766765358330422,3.94130590316755,3.08169519046291,0,0.864719720501769,0.37872730027914,0.126995788584338,0,0,0,0.411309970813294,1.50171528921959,2.00078502841405,1.23344192779897,5.66748089483264,4.18028229179415,0.387815147273333,3.57656445851882,0,2.39344304926383,0,0.257207374262142,0,1.0656887160644,0.142977993658148,0,0,1.95441710576241,0,0,3.31583314765545,5.22920075160176,0.799783929456456,1.2162378064119,1.00451418286425,0,5.03212196532324,1.14861935834114,0,9.70034754672781,3.90405012845728,5.55088986043676,0,0,0,0,3.04913549066956,0,0,0.335032530668698,0,26.9642528620986,23.932916736322,43.0992133973477,2.69921281782108,4.50153468953709,1.35632511849868,5.19927153827018,4.63915370872621,7.88512075169673,7.73133338951907,2.10662269809403,6.82222512167955,1.03473071292505,0.664225598535437,0.553107505625109,0,0.587403472388222,0,0.413536052245775,1.07857100409308,0.74709290462411,0,0,0,12.9016060065764,9.821566290436,7.57782254969299,8.07276640310916,10.2341449813341,5.95159508231348,1.48418066444991,1.54209693802656,1.24293207719189,1.47828880824856,2.59627214591811,1.04589340613963,0,1.40354529212299,0.0920809889358963,0.34444334449382,0,0.262248829918848,0,0.770153371044148,0,0,0.73886140225013,0,0.340187410553031,1.94324324491925,0,0.812839312631559,0,0.509752546090077,0,0.447749509444357,0,0,0,0.984043937099117,2.60302715731442,1.13345112812495,1.46511143709349,1.07262349896764,0,0,0,0.096670718292122,0.308097234229289,0.767518373630648,0.551346289938122,2.36324538710202,0.580066775656914,0.511359764496605,0.0890320356467374,0.165284915360978,0.192190067365106,4.33883222481586,0.30347334256665,0.464845549297286,0,0.6970372701606,0.924100740528266,4.25844824253617,0.869932992075073,1.11194531462352,4.43687148900173,2.60510858551767,4.42931194606216,7.81583795087682,0,0.42793898803392,0,1.56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| |||
|short_description=p5@TLR4 | |||
}} |
Revision as of 07:13, 14 September 2013
Short description: | p5@TLR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_TLR4_5end |
Coexpression cluster: | NA |
Association with transcript: | 33bp_to_NM_138554, NR_024168, NR_024169, uc004bjz.2, uc004bka.2, uc004bkb.2_5end |
EntrezGene: | TLR4 |
HGNC: | 11850 |
UniProt: | D1CS53O00206 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.23e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.23e-15 | 42 |
defensive cell | 1.14e-12 | 48 |
phagocyte | 1.14e-12 | 48 |
myeloid leukocyte | 8.52e-10 | 72 |
monopoietic cell | 2.98e-08 | 59 |
monocyte | 2.98e-08 | 59 |
monoblast | 2.98e-08 | 59 |
promonocyte | 2.98e-08 | 59 |
macrophage dendritic cell progenitor | 1.28e-07 | 61 |
myeloid lineage restricted progenitor cell | 1.96e-07 | 66 |
granulocyte monocyte progenitor cell | 3.71e-07 | 67 |
preadipocyte | 4.42e-07 | 12 |
fat cell | 8.12e-07 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.