FFCP PHASE1:Mm9::chr11:105898181..105898238,+: Difference between revisions
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{{FFCP|EntrezGene=71833|HGNC=|MCL_coexpression_id=60|UniProt=P61963,B1AR85,Q80ZU1|association_with_transcript=0bp_to_ENSMUST00000058438,ENSMUST00000106891,NM_027946,uc007lxy.1,uc007lxz.1_5end|description=CAGE_peak_1_at_Dcaf7_5end|id=chr11:105898181..105898238,+|ontology_enrichment_celltype=CL:0000117!4.55e-14!23;CL:0000337!4.55e-14!23;CL:0000540!6.88e-10!33;CL:0000047!6.88e-10!33;CL:0000031!6.88e-10!33;CL:0000404!6.88e-10!33;CL:0000393!1.87e-09!39;CL:0000211!1.87e-09!39;CL:0002319!7.34e-09!43;CL:0000221!9.46e-09!44;CL:0000133!9.46e-09!44;CL:0000055!4.64e-08!50;CL:0002371!7.93e-07!118|ontology_enrichment_celltype_v019_2=CL:0000117,4.55e-14,23;CL:0000337,4.55e-14,23;CL:0000540,6.88e-10,33;CL:0000047,6.88e-10,33;CL:0000031,6.88e-10,33;CL:0000404,6.88e-10,33;CL:0000393,1.87e-09,39;CL:0000211,1.87e-09,39;CL:0002319,7.34e-09,43;CL:0000221,9.46e-09,44;CL:0000133,9.46e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.66e-22!73;UBERON:0005743!2.66e-22!73;UBERON:0001049!1.10e-21!52;UBERON:0005068!1.10e-21!52;UBERON:0006241!1.10e-21!52;UBERON:0007135!1.10e-21!52;UBERON:0000073!2.02e-21!75;UBERON:0001016!2.02e-21!75;UBERON:0000955!3.68e-20!50;UBERON:0006238!3.68e-20!50;UBERON:0002616!1.36e-19!49;UBERON:0002020!5.38e-19!34;UBERON:0003080!3.00e-17!40;UBERON:0002780!6.19e-17!39;UBERON:0001890!6.19e-17!39;UBERON:0006240!6.19e-17!39;UBERON:0002791!1.40e-15!29;UBERON:0003528!1.40e-15!29;UBERON:0001893!1.40e-15!29;UBERON:0000033!6.76e-15!63;UBERON:0007811!1.99e-14!86;UBERON:0004121!3.19e-14!102;UBERON:0000924!3.19e-14!102;UBERON:0006601!3.19e-14!102;UBERON:0003056!6.65e-14!49;UBERON:0002346!1.27e-13!71;UBERON:0003075!1.27e-13!71;UBERON:0007284!1.27e-13!71;UBERON:0000153!7.09e-13!94;UBERON:0000956!2.52e-11!21;UBERON:0001869!2.52e-11!21;UBERON:0000203!2.52e-11!21;UBERON:0000064!2.26e-10!99;UBERON:0002619!2.11e-09!17;UBERON:0002021!2.64e-07!10;UBERON:0000411!2.64e-07!10;UBERON:0001950!2.64e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.33e-23,54;UBERON:0001017,2.66e-22,73;UBERON:0001049,1.10e-21,52;UBERON:0005068,1.10e-21,52;UBERON:0006241,1.10e-21,52;UBERON:0007135,1.10e-21,52;UBERON:0001016,2.02e-21,75;UBERON:0002020,5.38e-19,34;UBERON:0000955,1.59e-18,47;UBERON:0006238,1.59e-18,47;UBERON:0002616,5.73e-18,46;UBERON:0002346,2.95e-17,64;UBERON:0003075,2.95e-17,64;UBERON:0007284,2.95e-17,64;UBERON:0003080,3.00e-17,40;UBERON:0004121,4.37e-17,95;UBERON:0000924,4.37e-17,95;UBERON:0006601,4.37e-17,95;UBERON:0002780,6.19e-17,39;UBERON:0001890,6.19e-17,39;UBERON:0006240,6.19e-17,39;UBERON:0010371,1.08e-15,73;UBERON:0003528,1.40e-15,29;UBERON:0002791,1.40e-15,29;UBERON:0001893,1.40e-15,29;UBERON:0003056,6.65e-14,49;UBERON:0000956,2.52e-11,21;UBERON:0001869,2.52e-11,21;UBERON:0000203,2.52e-11,21;UBERON:0002619,2.11e-09,17;UBERON:0002021,2.64e-07,10;UBERON:0000411,2.64e-07,10;UBERON:0001950,2.64e-07,10;UBERON:0010314,7.52e-07,92|phase1_expression=34.9124486688451,65.6073766361999,60.5148988388083,66.8445906988094,61.6101747834007,40.7946630745892,39.2469236200483,46.7426430858506,36.745856481585,34.407485369333,54.2760959274851,47.3846624432298,58.8930510963348,45.8957112699736,53.6306716523217,51.4287179170158,59.4627596408925,48.2657112998104,52.3777136373922,56.01943403734,59.1901299451446,25.5177744586275,27.4259778595882,45.7578329189143,41.9818984352921,56.274732483272,56.8605834929979,44.602545165979,36.8645433745365,41.3329412806286,27.9380443425684,48.8973618563916,59.0462196081187,63.3926724061755,34.9510459899042,33.9118676531324,35.933806702177,63.1982762412731,59.3814861838088,51.3053269094322,58.2349173150704,59.4249571913848,52.9206284803957,40.4128785701603,41.3617879375619,33.0384153891027,53.2026114156667,35.7561256463932,40.2025714404083,49.5796242639423,44.0957228119892,31.6255641602937,53.1870861203024,92.8463541774521,71.2518854182024,41.4187692017875,43.8396163106298,66.0060278115126,105.002243186131,129.602789921648,113.455821227606,56.5870368555451,40.9075606211124,56.2437323300874,54.3876499411836,67.4956109198795,53.0292195617576,51.1010346077668,72.6864182282428,77.8984264173855,72.7724366275782,139.112029404652,135.392415603339,82.1913262732342,81.7561867785556,80.8912532216818,82.5869107495415,77.1231522034534,71.7342510306657,108.146755938759,110.700048758916,96.8898869235574,73.983494735366,62.4666497135165,71.3567817117703,129.047320437466,112.046512788894,101.401298528964,34.152513193266,39.7506406161692,41.1607573956382,28.3939879403858,14.2793980078628,22.6675340487883,18.1937396885347,27.7776670000348,31.3191056893807,24.0306754835061,16.8860902991865,25.4404493647445,39.8586877968006,97.5281228348816,178.363667794652,234.652012040599,35.5045307258391,35.7237410319889,30.8369911459018,29.3452570877984,44.0194402200192,37.4074190443358,32.6152414320335,31.9688752227748,35.284171080177,37.9821054192609,37.9811524048327,27.5209835011989,39.5511948374998,24.581890676385,34.4998115260451,32.1916031395344,32.4637032136779,25.6983884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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:71833 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P61963,uniprot:B1AR85,uniprot:Q80ZU1 | |||
|association_with_transcript=0bp_to_ENSMUST00000058438,ENSMUST00000106891,NM_027946,uc007lxy.1,uc007lxz.1_5end | |||
|cluster_id=chr11:105898181..105898238,+ | |||
|description=CAGE_peak_1_at_Dcaf7_5end | |||
|id=chr11:105898181..105898238,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.55e-14!23;CL:0000337!4.55e-14!23;CL:0000540!6.88e-10!33;CL:0000047!6.88e-10!33;CL:0000031!6.88e-10!33;CL:0000404!6.88e-10!33;CL:0000393!1.87e-09!39;CL:0000211!1.87e-09!39;CL:0002319!7.34e-09!43;CL:0000221!9.46e-09!44;CL:0000133!9.46e-09!44;CL:0000055!4.64e-08!50;CL:0002371!7.93e-07!118 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.55e-14,23;CL:0000337,4.55e-14,23;CL:0000540,6.88e-10,33;CL:0000047,6.88e-10,33;CL:0000031,6.88e-10,33;CL:0000404,6.88e-10,33;CL:0000393,1.87e-09,39;CL:0000211,1.87e-09,39;CL:0002319,7.34e-09,43;CL:0000221,9.46e-09,44;CL:0000133,9.46e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.66e-22!73;UBERON:0005743!2.66e-22!73;UBERON:0001049!1.10e-21!52;UBERON:0005068!1.10e-21!52;UBERON:0006241!1.10e-21!52;UBERON:0007135!1.10e-21!52;UBERON:0000073!2.02e-21!75;UBERON:0001016!2.02e-21!75;UBERON:0000955!3.68e-20!50;UBERON:0006238!3.68e-20!50;UBERON:0002616!1.36e-19!49;UBERON:0002020!5.38e-19!34;UBERON:0003080!3.00e-17!40;UBERON:0002780!6.19e-17!39;UBERON:0001890!6.19e-17!39;UBERON:0006240!6.19e-17!39;UBERON:0002791!1.40e-15!29;UBERON:0003528!1.40e-15!29;UBERON:0001893!1.40e-15!29;UBERON:0000033!6.76e-15!63;UBERON:0007811!1.99e-14!86;UBERON:0004121!3.19e-14!102;UBERON:0000924!3.19e-14!102;UBERON:0006601!3.19e-14!102;UBERON:0003056!6.65e-14!49;UBERON:0002346!1.27e-13!71;UBERON:0003075!1.27e-13!71;UBERON:0007284!1.27e-13!71;UBERON:0000153!7.09e-13!94;UBERON:0000956!2.52e-11!21;UBERON:0001869!2.52e-11!21;UBERON:0000203!2.52e-11!21;UBERON:0000064!2.26e-10!99;UBERON:0002619!2.11e-09!17;UBERON:0002021!2.64e-07!10;UBERON:0000411!2.64e-07!10;UBERON:0001950!2.64e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.33e-23,54;UBERON:0001017,2.66e-22,73;UBERON:0001049,1.10e-21,52;UBERON:0005068,1.10e-21,52;UBERON:0006241,1.10e-21,52;UBERON:0007135,1.10e-21,52;UBERON:0001016,2.02e-21,75;UBERON:0002020,5.38e-19,34;UBERON:0000955,1.59e-18,47;UBERON:0006238,1.59e-18,47;UBERON:0002616,5.73e-18,46;UBERON:0002346,2.95e-17,64;UBERON:0003075,2.95e-17,64;UBERON:0007284,2.95e-17,64;UBERON:0003080,3.00e-17,40;UBERON:0004121,4.37e-17,95;UBERON:0000924,4.37e-17,95;UBERON:0006601,4.37e-17,95;UBERON:0002780,6.19e-17,39;UBERON:0001890,6.19e-17,39;UBERON:0006240,6.19e-17,39;UBERON:0010371,1.08e-15,73;UBERON:0003528,1.40e-15,29;UBERON:0002791,1.40e-15,29;UBERON:0001893,1.40e-15,29;UBERON:0003056,6.65e-14,49;UBERON:0000956,2.52e-11,21;UBERON:0001869,2.52e-11,21;UBERON:0000203,2.52e-11,21;UBERON:0002619,2.11e-09,17;UBERON:0002021,2.64e-07,10;UBERON:0000411,2.64e-07,10;UBERON:0001950,2.64e-07,10;UBERON:0010314,7.52e-07,92 | |||
|phase1_expression=34.9124486688451,65.6073766361999,60.5148988388083,66.8445906988094,61.6101747834007,40.7946630745892,39.2469236200483,46.7426430858506,36.745856481585,34.407485369333,54.2760959274851,47.3846624432298,58.8930510963348,45.8957112699736,53.6306716523217,51.4287179170158,59.4627596408925,48.2657112998104,52.3777136373922,56.01943403734,59.1901299451446,25.5177744586275,27.4259778595882,45.7578329189143,41.9818984352921,56.274732483272,56.8605834929979,44.602545165979,36.8645433745365,41.3329412806286,27.9380443425684,48.8973618563916,59.0462196081187,63.3926724061755,34.9510459899042,33.9118676531324,35.933806702177,63.1982762412731,59.3814861838088,51.3053269094322,58.2349173150704,59.4249571913848,52.9206284803957,40.4128785701603,41.3617879375619,33.0384153891027,53.2026114156667,35.7561256463932,40.2025714404083,49.5796242639423,44.0957228119892,31.6255641602937,53.1870861203024,92.8463541774521,71.2518854182024,41.4187692017875,43.8396163106298,66.0060278115126,105.002243186131,129.602789921648,113.455821227606,56.5870368555451,40.9075606211124,56.2437323300874,54.3876499411836,67.4956109198795,53.0292195617576,51.1010346077668,72.6864182282428,77.8984264173855,72.7724366275782,139.112029404652,135.392415603339,82.1913262732342,81.7561867785556,80.8912532216818,82.5869107495415,77.1231522034534,71.7342510306657,108.146755938759,110.700048758916,96.8898869235574,73.983494735366,62.4666497135165,71.3567817117703,129.047320437466,112.046512788894,101.401298528964,34.152513193266,39.7506406161692,41.1607573956382,28.3939879403858,14.2793980078628,22.6675340487883,18.1937396885347,27.7776670000348,31.3191056893807,24.0306754835061,16.8860902991865,25.4404493647445,39.8586877968006,97.5281228348816,178.363667794652,234.652012040599,35.5045307258391,35.7237410319889,30.8369911459018,29.3452570877984,44.0194402200192,37.4074190443358,32.6152414320335,31.9688752227748,35.284171080177,37.9821054192609,37.9811524048327,27.5209835011989,39.5511948374998,24.581890676385,34.4998115260451,32.1916031395344,32.4637032136779,25.6983884161668,50.325775528893,53.2861050561016,70.5835401961344,38.8294723917059,28.2763693833972,22.7963037777495,24.2704133709554,54.6735833827603,75.945100067892,99.14128381705,76.8303495249862,71.6003280524925,58.3884405212364,68.7902955407292,36.9676890776648,32.9678472116747,39.1720275572196,46.0867664391378,34.6120378280792,33.7956093517205,37.632985129318,35.2649273735573,36.2634540476577,38.4341160854549,41.8846708781988,53.0341910014982,37.2932627773817,39.5231707550742,38.7092473160687,33.9753385262741,36.9802841470045,39.700746983527,36.0118738713901,34.4329281595993,27.3863143052162,23.1613116403244,22.4489164522518,34.1757524683578,33.3027005173157,24.488440358698,32.1972840395886,35.2207974827853,30.6991554645883,32.7872862098075,31.6562613651551,28.1404475104878,33.4056495324365,32.5051578876609,32.1032485801589,31.4329972964464,37.1039694841876,29.6596185460422,71.7088724603674,69.1518995188791,57.1624494561971,46.2788491661203,44.1506678607934,39.4802342162745,38.1447685513396,40.3367049246685,37.5818894097831,42.6105402492133,46.5038480313621,47.1039010510671,39.7109629904426,41.5819026566005,46.986344995708,39.5480539807857,38.2564348278209,52.9715786856617,31.1055357563054,30.3901043541879,30.4310886317317,36.0462850286206,29.4807780494791,27.1425622975533,35.4124607895841,26.717436784308,31.399745568275,28.2579505380923,16.008441862706,37.3733036804051,39.704917012867,36.4276622063463,45.8463874338017,39.7942313591488,31.0643539173332,31.3588789821384,26.7523124178808,26.6324570792439,33.0666875012915,34.9812490808393,26.8352398878522,30.3094653536534,24.3980482389801,24.6046195895317,41.9389741678193,34.6769283539987,40.4153141576224,40.0598402429444,39.8973422090454,36.6838703797576,31.4217605969538,29.2700471786698,38.778245450123,36.9846031713454,36.1962324852496,38.8356055876299,39.0268059016924,36.3069137039594,52.7769493787453,33.1782467129413,39.3411418415229,28.6974216156922,49.6101323062277,50.2838135480552,35.0820783106085,33.0736914637729,35.652428794037,37.8725581967739,40.0687519783006,37.9960388744558,38.5441706162542,44.1599388030579,40.8858808691643,36.8242380968253,42.6910800182245,81.2942930547172,32.9300997683183,41.4892856544705,37.7897745700296,34.1488154553148,39.8235415019888,31.8042633363026,36.2788268357701,38.4754362702032,40.7516612175466,33.817866273832,29.7192537143454,39.6251765130481,33.8672509465485,38.8725212261054,30.5713964867496,30.9406629744561,49.0233032285455,39.6134406868882,43.9819524861365,48.2258328821083,47.7045228497716,53.5106452806212,43.6054904595621,57.2394104335447,28.395276675709,26.6908409288413,40.797753640168,47.8170133530292,40.5275711006723,38.9018365786605,44.645256657173,43.9897611316764,41.9732404746985,53.0316363750058,44.4264290074417,45.6114978198722,34.6313766181361,44.4549558531071,36.9074414846768,34.3167259809784,28.7263546689615,27.8503390124079,28.4691946037113,23.8667654503778,36.220471265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| |||
|short_description=p1@Dcaf7 | |||
}} |
Revision as of 07:17, 5 August 2015
Short description: | p1@Dcaf7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dcaf7_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000058438, ENSMUST00000106891, NM_027946, uc007lxy.1, uc007lxz.1_5end |
EntrezGene: | 71833 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.55e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.55e-14 | 23 |
neuron | 6.88e-10 | 33 |
neuronal stem cell | 6.88e-10 | 33 |
neuroblast | 6.88e-10 | 33 |
electrically signaling cell | 6.88e-10 | 33 |
electrically responsive cell | 1.87e-09 | 39 |
electrically active cell | 1.87e-09 | 39 |
neural cell | 7.34e-09 | 43 |
ectodermal cell | 9.46e-09 | 44 |
neurectodermal cell | 9.46e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 4.33e-23 | 54 |
central nervous system | 2.66e-22 | 73 |
neural tube | 1.10e-21 | 52 |
neural rod | 1.10e-21 | 52 |
future spinal cord | 1.10e-21 | 52 |
neural keel | 1.10e-21 | 52 |
nervous system | 2.02e-21 | 75 |
gray matter | 5.38e-19 | 34 |
brain | 1.59e-18 | 47 |
future brain | 1.59e-18 | 47 |
regional part of brain | 5.73e-18 | 46 |
neurectoderm | 2.95e-17 | 64 |
neural plate | 2.95e-17 | 64 |
presumptive neural plate | 2.95e-17 | 64 |
anterior neural tube | 3.00e-17 | 40 |
ectoderm-derived structure | 4.37e-17 | 95 |
ectoderm | 4.37e-17 | 95 |
presumptive ectoderm | 4.37e-17 | 95 |
regional part of forebrain | 6.19e-17 | 39 |
forebrain | 6.19e-17 | 39 |
future forebrain | 6.19e-17 | 39 |
ecto-epithelium | 1.08e-15 | 73 |
brain grey matter | 1.40e-15 | 29 |
regional part of telencephalon | 1.40e-15 | 29 |
telencephalon | 1.40e-15 | 29 |
pre-chordal neural plate | 6.65e-14 | 49 |
cerebral cortex | 2.52e-11 | 21 |
cerebral hemisphere | 2.52e-11 | 21 |
pallium | 2.52e-11 | 21 |
regional part of cerebral cortex | 2.11e-09 | 17 |
occipital lobe | 2.64e-07 | 10 |
visual cortex | 2.64e-07 | 10 |
neocortex | 2.64e-07 | 10 |
structure with developmental contribution from neural crest | 7.52e-07 | 92 |