FFCP PHASE1:Mm9::chr14:32064640..32064716,+: Difference between revisions
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{{FFCP|EntrezGene=104416|HGNC=|MCL_coexpression_id=60|UniProt=Q99PU7|association_with_transcript=0bp_to_ENSMUST00000022458,NM_027088,uc007sxh.1_5end|description=CAGE_peak_1_at_Bap1_5end|id=chr14:32064640..32064716,+|ontology_enrichment_celltype=CL:0000117!6.34e-13!23;CL:0000337!6.34e-13!23;CL:0000540!5.77e-11!33;CL:0000047!5.77e-11!33;CL:0000031!5.77e-11!33;CL:0000404!5.77e-11!33;CL:0002319!8.39e-10!43;CL:0000221!2.58e-09!44;CL:0000133!2.58e-09!44|ontology_enrichment_celltype_v019_2=CL:0000117,6.34e-13,23;CL:0000337,6.34e-13,23;CL:0000540,5.77e-11,33;CL:0000047,5.77e-11,33;CL:0000031,5.77e-11,33;CL:0000404,5.77e-11,33;CL:0002319,8.39e-10,43;CL:0000221,2.58e-09,44;CL:0000133,2.58e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.12e-25!73;UBERON:0005743!8.12e-25!73;UBERON:0000073!4.86e-24!75;UBERON:0001016!4.86e-24!75;UBERON:0007811!1.30e-22!86;UBERON:0001049!1.83e-22!52;UBERON:0005068!1.83e-22!52;UBERON:0006241!1.83e-22!52;UBERON:0007135!1.83e-22!52;UBERON:0000153!6.59e-22!94;UBERON:0000955!7.74e-22!50;UBERON:0006238!7.74e-22!50;UBERON:0002346!9.41e-22!71;UBERON:0003075!9.41e-22!71;UBERON:0007284!9.41e-22!71;UBERON:0002616!2.32e-21!49;UBERON:0000033!3.08e-20!63;UBERON:0003056!2.75e-18!49;UBERON:0004121!2.04e-17!102;UBERON:0000924!2.04e-17!102;UBERON:0006601!2.04e-17!102;UBERON:0002020!2.41e-17!34;UBERON:0003080!2.52e-17!40;UBERON:0002780!7.67e-17!39;UBERON:0001890!7.67e-17!39;UBERON:0006240!7.67e-17!39;UBERON:0002791!3.22e-15!29;UBERON:0003528!3.22e-15!29;UBERON:0001893!3.22e-15!29;UBERON:0000956!4.90e-11!21;UBERON:0001869!4.90e-11!21;UBERON:0000203!4.90e-11!21;UBERON:0002619!1.51e-08!17;UBERON:0002021!4.74e-07!10;UBERON:0000411!4.74e-07!10;UBERON:0001950!4.74e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.12e-25,73;UBERON:0001016,4.86e-24,75;UBERON:0000073,1.03e-23,54;UBERON:0002346,1.16e-23,64;UBERON:0003075,1.16e-23,64;UBERON:0007284,1.16e-23,64;UBERON:0001049,1.83e-22,52;UBERON:0005068,1.83e-22,52;UBERON:0006241,1.83e-22,52;UBERON:0007135,1.83e-22,52;UBERON:0000955,5.11e-20,47;UBERON:0006238,5.11e-20,47;UBERON:0002616,1.50e-19,46;UBERON:0004121,2.52e-18,95;UBERON:0000924,2.52e-18,95;UBERON:0006601,2.52e-18,95;UBERON:0003056,2.75e-18,49;UBERON:0002020,2.41e-17,34;UBERON:0003080,2.52e-17,40;UBERON:0010371,6.91e-17,73;UBERON:0002780,7.67e-17,39;UBERON:0001890,7.67e-17,39;UBERON:0006240,7.67e-17,39;UBERON:0010314,3.14e-15,92;UBERON:0003528,3.22e-15,29;UBERON:0002791,3.22e-15,29;UBERON:0001893,3.22e-15,29;UBERON:0000956,4.90e-11,21;UBERON:0001869,4.90e-11,21;UBERON:0000203,4.90e-11,21;UBERON:0002619,1.51e-08,17;UBERON:0002021,4.74e-07,10;UBERON:0000411,4.74e-07,10;UBERON:0001950,4.74e-07,10|phase1_expression=27.225304007815,22.3344260889191,32.7599452360466,24.1971369045464,29.0519523368881,15.6127722878058,20.5579123724063,23.1130748960421,37.4498000923434,38.1525177904849,34.243593645101,32.0684079161252,25.6801094896809,27.4500063595652,24.650122374359,22.4747546802707,27.2829132469977,24.1328556499052,22.3496526777354,23.3414308488917,40.0553896611539,24.7234468490204,17.2391860831697,15.9992422793407,18.5821517664408,18.9496548157957,17.230479846363,14.8675150553263,15.2018735565099,14.617747526076,14.1907526819395,38.7368710810375,25.8327210785519,31.6963362030877,19.0642069035841,18.7845149255096,19.1919194886627,24.6933662134776,16.4080422349998,25.6526634547161,22.3527965451785,21.8574555186703,31.0726625939938,14.1004436132647,14.2941473019516,22.5762505158868,28.1660883965294,33.3578489262083,28.3395175727469,20.2207095037255,20.4380175573029,33.0630898039435,38.7577819993371,32.6412963905105,34.6176613116738,17.4936416504444,16.9054729563866,20.6268836910977,49.5675329106015,45.4932242173948,39.2975470173831,21.0083609882862,14.2287167377782,27.4469413770827,20.7661936139065,26.9982443679518,27.2636100571748,34.5796474789399,55.6813218096525,54.6774050243347,54.0535150673052,46.56111045782,41.5232856989033,50.3437184773461,52.3316271759571,55.1531271966013,55.0579404996944,47.2443150915195,45.7747469103606,52.2269699411568,50.0437410505181,46.3612899795516,45.7860118362265,35.4540444319958,43.3947023686141,35.6500588423138,36.020035242173,45.8542636730239,20.6732507799592,27.0546185182292,24.6384815396426,17.2084775396277,24.478968013479,16.7307989407723,14.2950811838487,20.1612099193801,23.4542181620026,18.2360445158522,19.2241643406123,14.4869225549239,21.1265129665021,30.7983545794363,45.8649431471962,63.9960032837998,12.3399893376392,13.9347926011304,15.6712577954583,20.0963628305546,14.5005214842416,23.3054158331775,29.6659908770092,21.3125834818499,23.9840117146301,22.6083960828934,25.2815720341765,29.1546491884847,31.1465659345311,20.2439099687876,21.230653246797,27.3385976411122,26.942665252168,23.2740121504907,9.31958806090611,40.110969190582,46.497168912587,13.5392239260553,34.7463861067169,20.3966928537759,31.7675567682662,44.4878199032323,49.4100651044117,57.9266563240305,53.7117149394134,76.4589217417688,48.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:104416 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q99PU7 | |||
|association_with_transcript=0bp_to_ENSMUST00000022458,NM_027088,uc007sxh.1_5end | |||
|cluster_id=chr14:32064640..32064716,+ | |||
|description=CAGE_peak_1_at_Bap1_5end | |||
|id=chr14:32064640..32064716,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.34e-13!23;CL:0000337!6.34e-13!23;CL:0000540!5.77e-11!33;CL:0000047!5.77e-11!33;CL:0000031!5.77e-11!33;CL:0000404!5.77e-11!33;CL:0002319!8.39e-10!43;CL:0000221!2.58e-09!44;CL:0000133!2.58e-09!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.34e-13,23;CL:0000337,6.34e-13,23;CL:0000540,5.77e-11,33;CL:0000047,5.77e-11,33;CL:0000031,5.77e-11,33;CL:0000404,5.77e-11,33;CL:0002319,8.39e-10,43;CL:0000221,2.58e-09,44;CL:0000133,2.58e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.12e-25!73;UBERON:0005743!8.12e-25!73;UBERON:0000073!4.86e-24!75;UBERON:0001016!4.86e-24!75;UBERON:0007811!1.30e-22!86;UBERON:0001049!1.83e-22!52;UBERON:0005068!1.83e-22!52;UBERON:0006241!1.83e-22!52;UBERON:0007135!1.83e-22!52;UBERON:0000153!6.59e-22!94;UBERON:0000955!7.74e-22!50;UBERON:0006238!7.74e-22!50;UBERON:0002346!9.41e-22!71;UBERON:0003075!9.41e-22!71;UBERON:0007284!9.41e-22!71;UBERON:0002616!2.32e-21!49;UBERON:0000033!3.08e-20!63;UBERON:0003056!2.75e-18!49;UBERON:0004121!2.04e-17!102;UBERON:0000924!2.04e-17!102;UBERON:0006601!2.04e-17!102;UBERON:0002020!2.41e-17!34;UBERON:0003080!2.52e-17!40;UBERON:0002780!7.67e-17!39;UBERON:0001890!7.67e-17!39;UBERON:0006240!7.67e-17!39;UBERON:0002791!3.22e-15!29;UBERON:0003528!3.22e-15!29;UBERON:0001893!3.22e-15!29;UBERON:0000956!4.90e-11!21;UBERON:0001869!4.90e-11!21;UBERON:0000203!4.90e-11!21;UBERON:0002619!1.51e-08!17;UBERON:0002021!4.74e-07!10;UBERON:0000411!4.74e-07!10;UBERON:0001950!4.74e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.12e-25,73;UBERON:0001016,4.86e-24,75;UBERON:0000073,1.03e-23,54;UBERON:0002346,1.16e-23,64;UBERON:0003075,1.16e-23,64;UBERON:0007284,1.16e-23,64;UBERON:0001049,1.83e-22,52;UBERON:0005068,1.83e-22,52;UBERON:0006241,1.83e-22,52;UBERON:0007135,1.83e-22,52;UBERON:0000955,5.11e-20,47;UBERON:0006238,5.11e-20,47;UBERON:0002616,1.50e-19,46;UBERON:0004121,2.52e-18,95;UBERON:0000924,2.52e-18,95;UBERON:0006601,2.52e-18,95;UBERON:0003056,2.75e-18,49;UBERON:0002020,2.41e-17,34;UBERON:0003080,2.52e-17,40;UBERON:0010371,6.91e-17,73;UBERON:0002780,7.67e-17,39;UBERON:0001890,7.67e-17,39;UBERON:0006240,7.67e-17,39;UBERON:0010314,3.14e-15,92;UBERON:0003528,3.22e-15,29;UBERON:0002791,3.22e-15,29;UBERON:0001893,3.22e-15,29;UBERON:0000956,4.90e-11,21;UBERON:0001869,4.90e-11,21;UBERON:0000203,4.90e-11,21;UBERON:0002619,1.51e-08,17;UBERON:0002021,4.74e-07,10;UBERON:0000411,4.74e-07,10;UBERON:0001950,4.74e-07,10 | |||
|phase1_expression=27.225304007815,22.3344260889191,32.7599452360466,24.1971369045464,29.0519523368881,15.6127722878058,20.5579123724063,23.1130748960421,37.4498000923434,38.1525177904849,34.243593645101,32.0684079161252,25.6801094896809,27.4500063595652,24.650122374359,22.4747546802707,27.2829132469977,24.1328556499052,22.3496526777354,23.3414308488917,40.0553896611539,24.7234468490204,17.2391860831697,15.9992422793407,18.5821517664408,18.9496548157957,17.230479846363,14.8675150553263,15.2018735565099,14.617747526076,14.1907526819395,38.7368710810375,25.8327210785519,31.6963362030877,19.0642069035841,18.7845149255096,19.1919194886627,24.6933662134776,16.4080422349998,25.6526634547161,22.3527965451785,21.8574555186703,31.0726625939938,14.1004436132647,14.2941473019516,22.5762505158868,28.1660883965294,33.3578489262083,28.3395175727469,20.2207095037255,20.4380175573029,33.0630898039435,38.7577819993371,32.6412963905105,34.6176613116738,17.4936416504444,16.9054729563866,20.6268836910977,49.5675329106015,45.4932242173948,39.2975470173831,21.0083609882862,14.2287167377782,27.4469413770827,20.7661936139065,26.9982443679518,27.2636100571748,34.5796474789399,55.6813218096525,54.6774050243347,54.0535150673052,46.56111045782,41.5232856989033,50.3437184773461,52.3316271759571,55.1531271966013,55.0579404996944,47.2443150915195,45.7747469103606,52.2269699411568,50.0437410505181,46.3612899795516,45.7860118362265,35.4540444319958,43.3947023686141,35.6500588423138,36.020035242173,45.8542636730239,20.6732507799592,27.0546185182292,24.6384815396426,17.2084775396277,24.478968013479,16.7307989407723,14.2950811838487,20.1612099193801,23.4542181620026,18.2360445158522,19.2241643406123,14.4869225549239,21.1265129665021,30.7983545794363,45.8649431471962,63.9960032837998,12.3399893376392,13.9347926011304,15.6712577954583,20.0963628305546,14.5005214842416,23.3054158331775,29.6659908770092,21.3125834818499,23.9840117146301,22.6083960828934,25.2815720341765,29.1546491884847,31.1465659345311,20.2439099687876,21.230653246797,27.3385976411122,26.942665252168,23.2740121504907,9.31958806090611,40.110969190582,46.497168912587,13.5392239260553,34.7463861067169,20.3966928537759,31.7675567682662,44.4878199032323,49.4100651044117,57.9266563240305,53.7117149394134,76.4589217417688,48.8301904714966,50.9437566032759,31.1628453381968,21.6468128861562,16.9324248150562,20.412860020988,34.3517969421538,35.6348261871883,39.6136685571768,28.031096117443,41.5703009814613,34.2063633160549,36.9184794765332,24.8355235909455,46.1315504876282,33.0935640293684,31.3193001011829,33.3177513289914,24.4681579318526,21.9398864908965,21.6071243228341,27.6657630877706,22.4708219940235,23.1613116403244,25.5747149456033,24.0265896141182,19.465662978431,21.2473232523998,20.5967919959133,22.431122419204,18.5120535464854,22.5557926407896,32.1928081679543,25.3380792936758,27.1523752357243,26.1026267885761,28.2930145315037,28.0703975856638,28.3219648725455,24.2913617956273,43.5300193527743,44.866410997368,20.1555457620117,19.8337924997658,31.9932375802851,24.1526138734856,24.4848176511977,22.991921807061,21.1259141652627,19.0225626112559,18.9811624617805,17.1286912912971,18.8501406600202,22.48208134065,22.2259059315797,19.7740269903929,17.5071820398502,21.9055400579804,40.9682666058656,31.8753350181143,38.3206301288473,21.5870407516033,26.1835857676295,33.8756010070239,23.587228347348,23.7652338247159,23.5498091762062,27.3941703906397,21.937494404449,30.0321190288969,28.8941722816408,26.3088671490279,25.9660955377284,22.6706530167272,21.3885715496393,20.1387296215567,23.5096078823801,19.4938603363538,25.8782771749238,21.9563159124417,20.9065240986756,18.6908369680863,17.0427542845817,32.3237159313456,16.2582807346612,30.3186258832776,29.0077658066806,23.424821836976,26.7546883048892,24.6234198439469,19.5195785526531,25.3673742215138,22.0689201748667,20.3747514476873,24.0776700672806,19.3358711364571,19.1680329871144,19.6722719670856,22.6186925908908,19.0366989336548,13.277635371514,15.7283945393698,46.5596710964597,42.8994772927464,16.2295595922909,39.3854646438822,30.2887890639606,28.8924670779512,26.4970779211343,28.1983181584011,24.285055474981,25.1938112402061,21.4549671887694,28.0565623594859,27.2748566783101,42.0930924512567,22.8523537185312,34.5447271114475,33.7176005861903,20.4562952485944,23.8941249011933,22.8213797985683,25.3951787850391,15.4656165399836,24.5100571091041,14.1420168054207,23.0001180919717,20.7214225802178,21.746340081468,18.6461687182131,13.7044191147498,27.8465966770104,28.937366489072,28.9898361390409,34.2800512024299,31.5075441496441,27.1330557472679,29.4308549043416,27.15058839935,36.2313289446373,15.7230044402686,31.774810629573,18.0833286405069,15.6641940294406,18.8913379234209,17.00824482974,21.4870219205646,21.1741760671129,23.0269860937582,48.025153220722,20.5045056957423,23.5281029478074,22.4085378117351,25.0530047816239,24.6049609897845,21.7339264546196,42.8345643584515,39.3263581029479,44.5003915650245,9.54670618015114,39.7001671944325,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| |||
|short_description=p1@Bap1 | |||
}} |
Revision as of 06:00, 4 August 2015
Short description: | p1@Bap1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Bap1_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000022458, NM_027088, uc007sxh.1_5end |
EntrezGene: | 104416 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.34e-13 | 23 |
neuroblast (sensu Vertebrata) | 6.34e-13 | 23 |
neuron | 5.77e-11 | 33 |
neuronal stem cell | 5.77e-11 | 33 |
neuroblast | 5.77e-11 | 33 |
electrically signaling cell | 5.77e-11 | 33 |
neural cell | 8.39e-10 | 43 |
ectodermal cell | 2.58e-09 | 44 |
neurectodermal cell | 2.58e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.12e-25 | 73 |
nervous system | 4.86e-24 | 75 |
regional part of nervous system | 1.03e-23 | 54 |
neurectoderm | 1.16e-23 | 64 |
neural plate | 1.16e-23 | 64 |
presumptive neural plate | 1.16e-23 | 64 |
neural tube | 1.83e-22 | 52 |
neural rod | 1.83e-22 | 52 |
future spinal cord | 1.83e-22 | 52 |
neural keel | 1.83e-22 | 52 |
brain | 5.11e-20 | 47 |
future brain | 5.11e-20 | 47 |
regional part of brain | 1.50e-19 | 46 |
ectoderm-derived structure | 2.52e-18 | 95 |
ectoderm | 2.52e-18 | 95 |
presumptive ectoderm | 2.52e-18 | 95 |
pre-chordal neural plate | 2.75e-18 | 49 |
gray matter | 2.41e-17 | 34 |
anterior neural tube | 2.52e-17 | 40 |
ecto-epithelium | 6.91e-17 | 73 |
regional part of forebrain | 7.67e-17 | 39 |
forebrain | 7.67e-17 | 39 |
future forebrain | 7.67e-17 | 39 |
structure with developmental contribution from neural crest | 3.14e-15 | 92 |
brain grey matter | 3.22e-15 | 29 |
regional part of telencephalon | 3.22e-15 | 29 |
telencephalon | 3.22e-15 | 29 |
cerebral cortex | 4.90e-11 | 21 |
cerebral hemisphere | 4.90e-11 | 21 |
pallium | 4.90e-11 | 21 |
regional part of cerebral cortex | 1.51e-08 | 17 |
occipital lobe | 4.74e-07 | 10 |
visual cortex | 4.74e-07 | 10 |
neocortex | 4.74e-07 | 10 |