FFCP PHASE1:Mm9::chr14:55735452..55735474,-: Difference between revisions
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{{FFCP|EntrezGene=319984|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=-35bp_to_ENSMUST00000133954_5end|description=CAGE_peak_1_at_Jph4_5end|id=chr14:55735452..55735474,-|ontology_enrichment_celltype=CL:0000117!7.51e-13!23;CL:0000337!7.51e-13!23;CL:0000540!1.02e-12!33;CL:0000047!1.02e-12!33;CL:0000031!1.02e-12!33;CL:0000404!1.02e-12!33;CL:0000393!1.54e-08!39;CL:0000211!1.54e-08!39;CL:0002319!2.47e-08!43;CL:0000221!3.02e-08!44;CL:0000133!3.02e-08!44|ontology_enrichment_celltype_v019_2=CL:0000117,8.63e-14,23;CL:0000337,8.63e-14,23;CL:0000540,1.20e-13,33;CL:0000047,1.20e-13,33;CL:0000031,1.20e-13,33;CL:0000404,1.20e-13,33;CL:0000393,1.41e-09,39;CL:0000211,1.41e-09,39;CL:0002319,1.90e-08,43;CL:0000221,2.32e-08,44;CL:0000133,2.32e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.48e-23!71;UBERON:0003075!1.48e-23!71;UBERON:0007284!1.48e-23!71;UBERON:0001017!4.58e-23!73;UBERON:0005743!4.58e-23!73;UBERON:0000073!1.63e-22!75;UBERON:0001016!1.63e-22!75;UBERON:0004121!1.70e-22!102;UBERON:0000924!1.70e-22!102;UBERON:0006601!1.70e-22!102;UBERON:0001049!7.77e-20!52;UBERON:0005068!7.77e-20!52;UBERON:0006241!7.77e-20!52;UBERON:0007135!7.77e-20!52;UBERON:0000033!4.34e-19!63;UBERON:0000955!6.57e-19!50;UBERON:0006238!6.57e-19!50;UBERON:0002616!2.76e-18!49;UBERON:0002020!2.04e-17!34;UBERON:0003056!6.26e-17!49;UBERON:0003080!1.67e-15!40;UBERON:0002780!7.00e-15!39;UBERON:0001890!7.00e-15!39;UBERON:0006240!7.00e-15!39;UBERON:0002791!8.90e-15!29;UBERON:0003528!8.90e-15!29;UBERON:0001893!8.90e-15!29;UBERON:0000956!2.22e-10!21;UBERON:0001869!2.22e-10!21;UBERON:0000203!2.22e-10!21;UBERON:0000468!1.00e-08!333;UBERON:0002619!2.23e-08!17;UBERON:0002021!4.36e-08!10;UBERON:0000411!4.36e-08!10;UBERON:0001950!4.36e-08!10;UBERON:0000153!1.94e-07!94;UBERON:0007811!2.34e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.75e-24,73;UBERON:0001016,2.64e-23,75;UBERON:0002346,9.03e-23,64;UBERON:0003075,9.03e-23,64;UBERON:0007284,9.03e-23,64;UBERON:0000073,4.48e-22,54;UBERON:0004121,1.97e-21,95;UBERON:0000924,1.97e-21,95;UBERON:0006601,1.97e-21,95;UBERON:0001049,8.92e-21,52;UBERON:0005068,8.92e-21,52;UBERON:0006241,8.92e-21,52;UBERON:0007135,8.92e-21,52;UBERON:0010371,2.99e-20,73;UBERON:0002020,8.65e-19,34;UBERON:0000955,7.29e-18,47;UBERON:0006238,7.29e-18,47;UBERON:0003056,1.85e-17,49;UBERON:0002616,3.29e-17,46;UBERON:0003080,2.35e-16,40;UBERON:0003528,6.28e-16,29;UBERON:0002791,6.28e-16,29;UBERON:0001893,6.28e-16,29;UBERON:0002780,1.10e-15,39;UBERON:0001890,1.10e-15,39;UBERON:0006240,1.10e-15,39;UBERON:0010314,2.16e-13,92;UBERON:0000956,3.66e-11,21;UBERON:0001869,3.66e-11,21;UBERON:0000203,3.66e-11,21;UBERON:0002619,5.41e-09,17;UBERON:0002021,1.25e-08,10;UBERON:0000411,1.25e-08,10;UBERON:0001950,1.25e-08,10|phase1_expression=3.52327463630547,0,0,0,0,0.503637815735669,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,28.1493290400041,0,0,0,0,0,0,0.430942465371778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0,0.194429899074283,0,2.87505128729943,0,0,0,0.257259436035947,0,1.03134418455488,64.1343180924925,79.3486468908049,88.1025650873589,0.338844532069132,0,0,0,0,0.299600110518405,2.30530983192933,42.9274994957098,46.0370249711065,38.9101178500057,61.4149616468178,66.0396937445324,47.0364668985424,40.159252356641,51.4762520501612,69.3730050296149,136.37007707498,114.283260742645,69.1084147706216,73.5560654563374,75.0115253601734,89.3385596804419,74.8474271342134,86.0254134983441,71.0054890991539,93.2534509234124,60.5798198932227,0.681535739998656,1.66257432234928,0.869593466105033,0,0,0,0,0,5.47733238513832,0,0,0,1.83096445709685,0,0,0,0,0,0,3.53970027129086,0.258937883647172,5.93768556259299,6.59244241711316,15.2232739156071,8.53277339847416,10.0984169170257,13.6402900277418,2.51333182659351,0,0.86759614151947,1.76922110389975,2.42650274921114,1.10420759230197,0.969750506270444,0,209.045489066245,162.530644487241,0.510914110417183,0,0,0,153.685196029348,258.487840592524,64.4606826338994,292.198682243217,226.563895194673,140.880294211382,149.74868581154,5.49932564791708,1.24406970610093,0.505445516867349,7.99679052368601,0.910843100738926,3.44853156650209,9.18316862007281,9.34369870581433,11.3620953582718,11.7864622662062,11.2442069471675,23.2833033665114,0.215567992932842,2.08016688184601,2.81521798662318,3.5071317188412,5.28289773528636,7.66154766348766,4.32142486456681,1.79130840136644,0,0,0,0.207125772535502,0.938104239924385,0.36012412292203,0.946978942340841,0,0.617068451549513,0,0.536546802799238,0.116765342367169,0.493679549740441,0.656669856316381,0.324275238183423,0.292399974850665,0,0.536825675041487,308.074774646446,91.5851050175631,0.330418782983798,1.58670339998127,4.05247676016945,3.48355007790658,7.7320476793256,7.05892336181699,5.11469500843202,3.23383564391351,1.89811624617805,4.11747386810027,4.52403375840485,3.78017296878187,2.9244613067868,1.79763881730844,1.72910439899755,1.99141273254367,1.32767530667157,2.85621281524322,1.1270773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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:319984 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-35bp_to_ENSMUST00000133954_5end | |||
|cluster_id=chr14:55735452..55735474,- | |||
|description=CAGE_peak_1_at_Jph4_5end | |||
|id=chr14:55735452..55735474,- | |||
|ontology_enrichment_celltype=CL:0000117!7.51e-13!23;CL:0000337!7.51e-13!23;CL:0000540!1.02e-12!33;CL:0000047!1.02e-12!33;CL:0000031!1.02e-12!33;CL:0000404!1.02e-12!33;CL:0000393!1.54e-08!39;CL:0000211!1.54e-08!39;CL:0002319!2.47e-08!43;CL:0000221!3.02e-08!44;CL:0000133!3.02e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.63e-14,23;CL:0000337,8.63e-14,23;CL:0000540,1.20e-13,33;CL:0000047,1.20e-13,33;CL:0000031,1.20e-13,33;CL:0000404,1.20e-13,33;CL:0000393,1.41e-09,39;CL:0000211,1.41e-09,39;CL:0002319,1.90e-08,43;CL:0000221,2.32e-08,44;CL:0000133,2.32e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.48e-23!71;UBERON:0003075!1.48e-23!71;UBERON:0007284!1.48e-23!71;UBERON:0001017!4.58e-23!73;UBERON:0005743!4.58e-23!73;UBERON:0000073!1.63e-22!75;UBERON:0001016!1.63e-22!75;UBERON:0004121!1.70e-22!102;UBERON:0000924!1.70e-22!102;UBERON:0006601!1.70e-22!102;UBERON:0001049!7.77e-20!52;UBERON:0005068!7.77e-20!52;UBERON:0006241!7.77e-20!52;UBERON:0007135!7.77e-20!52;UBERON:0000033!4.34e-19!63;UBERON:0000955!6.57e-19!50;UBERON:0006238!6.57e-19!50;UBERON:0002616!2.76e-18!49;UBERON:0002020!2.04e-17!34;UBERON:0003056!6.26e-17!49;UBERON:0003080!1.67e-15!40;UBERON:0002780!7.00e-15!39;UBERON:0001890!7.00e-15!39;UBERON:0006240!7.00e-15!39;UBERON:0002791!8.90e-15!29;UBERON:0003528!8.90e-15!29;UBERON:0001893!8.90e-15!29;UBERON:0000956!2.22e-10!21;UBERON:0001869!2.22e-10!21;UBERON:0000203!2.22e-10!21;UBERON:0000468!1.00e-08!333;UBERON:0002619!2.23e-08!17;UBERON:0002021!4.36e-08!10;UBERON:0000411!4.36e-08!10;UBERON:0001950!4.36e-08!10;UBERON:0000153!1.94e-07!94;UBERON:0007811!2.34e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.75e-24,73;UBERON:0001016,2.64e-23,75;UBERON:0002346,9.03e-23,64;UBERON:0003075,9.03e-23,64;UBERON:0007284,9.03e-23,64;UBERON:0000073,4.48e-22,54;UBERON:0004121,1.97e-21,95;UBERON:0000924,1.97e-21,95;UBERON:0006601,1.97e-21,95;UBERON:0001049,8.92e-21,52;UBERON:0005068,8.92e-21,52;UBERON:0006241,8.92e-21,52;UBERON:0007135,8.92e-21,52;UBERON:0010371,2.99e-20,73;UBERON:0002020,8.65e-19,34;UBERON:0000955,7.29e-18,47;UBERON:0006238,7.29e-18,47;UBERON:0003056,1.85e-17,49;UBERON:0002616,3.29e-17,46;UBERON:0003080,2.35e-16,40;UBERON:0003528,6.28e-16,29;UBERON:0002791,6.28e-16,29;UBERON:0001893,6.28e-16,29;UBERON:0002780,1.10e-15,39;UBERON:0001890,1.10e-15,39;UBERON:0006240,1.10e-15,39;UBERON:0010314,2.16e-13,92;UBERON:0000956,3.66e-11,21;UBERON:0001869,3.66e-11,21;UBERON:0000203,3.66e-11,21;UBERON:0002619,5.41e-09,17;UBERON:0002021,1.25e-08,10;UBERON:0000411,1.25e-08,10;UBERON:0001950,1.25e-08,10 | |||
|phase1_expression=3.52327463630547,0,0,0,0,0.503637815735669,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,28.1493290400041,0,0,0,0,0,0,0.430942465371778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0,0.194429899074283,0,2.87505128729943,0,0,0,0.257259436035947,0,1.03134418455488,64.1343180924925,79.3486468908049,88.1025650873589,0.338844532069132,0,0,0,0,0.299600110518405,2.30530983192933,42.9274994957098,46.0370249711065,38.9101178500057,61.4149616468178,66.0396937445324,47.0364668985424,40.159252356641,51.4762520501612,69.3730050296149,136.37007707498,114.283260742645,69.1084147706216,73.5560654563374,75.0115253601734,89.3385596804419,74.8474271342134,86.0254134983441,71.0054890991539,93.2534509234124,60.5798198932227,0.681535739998656,1.66257432234928,0.869593466105033,0,0,0,0,0,5.47733238513832,0,0,0,1.83096445709685,0,0,0,0,0,0,3.53970027129086,0.258937883647172,5.93768556259299,6.59244241711316,15.2232739156071,8.53277339847416,10.0984169170257,13.6402900277418,2.51333182659351,0,0.86759614151947,1.76922110389975,2.42650274921114,1.10420759230197,0.969750506270444,0,209.045489066245,162.530644487241,0.510914110417183,0,0,0,153.685196029348,258.487840592524,64.4606826338994,292.198682243217,226.563895194673,140.880294211382,149.74868581154,5.49932564791708,1.24406970610093,0.505445516867349,7.99679052368601,0.910843100738926,3.44853156650209,9.18316862007281,9.34369870581433,11.3620953582718,11.7864622662062,11.2442069471675,23.2833033665114,0.215567992932842,2.08016688184601,2.81521798662318,3.5071317188412,5.28289773528636,7.66154766348766,4.32142486456681,1.79130840136644,0,0,0,0.207125772535502,0.938104239924385,0.36012412292203,0.946978942340841,0,0.617068451549513,0,0.536546802799238,0.116765342367169,0.493679549740441,0.656669856316381,0.324275238183423,0.292399974850665,0,0.536825675041487,308.074774646446,91.5851050175631,0.330418782983798,1.58670339998127,4.05247676016945,3.48355007790658,7.7320476793256,7.05892336181699,5.11469500843202,3.23383564391351,1.89811624617805,4.11747386810027,4.52403375840485,3.78017296878187,2.9244613067868,1.79763881730844,1.72910439899755,1.99141273254367,1.32767530667157,2.85621281524322,1.1270773567308,2.64746726198909,1.93952487167626,0.701358198903186,0.569128834118316,0,0.31399745568275,0.123397163921801,0,0.500535317148282,0.196558995113203,0.449724224769707,0,0.482354319504834,0,0,0,0,0,0,0,0,0,0,0.369506380333209,1.89491411770485,1.30371981153621,0.678980343100753,0.938760993154008,0.837531287209079,0.476087281772027,0.585400943573396,0.630540576424764,0.664394068946325,0.478364305972461,0.655453258862952,0.345369963731791,0.289298117163023,0,0,0,0.275936746304732,103.394579952138,85.0956844659395,0,0.252470927204373,6.31016438832513,8.58965237452605,10.7711698866399,1.19484398976276,3.56477878531831,4.24614796183249,3.64329631507405,8.47541987942804,5.13874111330481,125.957956037348,7.66476460124651,7.30068975035746,6.8412522928502,15.8371318053634,2.65490276679926,1.21390318077491,2.41858845571801,1.13163047853539,3.83892460745005,4.30409207121498,2.58428293168221,1.09060118843252,2.49548164869305,1.8962205476149,0,1.03135543248187,2.38307724027652,2.34079422240703,2.8458910432206,1.92903331528433,0.532020700926821,4.63758925765383,6.2528627828806,9.13394847343798,0.469343416127421,1.0591603543191,5.07215315526412,2.63818004706368,1.77610869365496,1.74907482291652,1.3130957840345,1.31312719796049,1.1659233465194,113.109434226411,0.170870880797853,1.23832120777933,0.185194527369712,0.376736914009382,0.136694227721025,0.457556346413045,0,0,0,5.72802370809068,3.47969592939249,6.09958401380546,4.42821897369385,3.97267762427491,4.80397640241591,4.72025212346872,5.78574190077352,2.6175594198403,4.92536898508813,0,0,0.897099276263873,0.827292452285488,1.75006069509643,2.0665571756437,1.18269287843545,1.99507305697782,2.73429208172295,2.51662426621706,1.20792060413003,0.576060012515731,0,0.810900861160657,0.616265742988964,0.129920822977795,0.179026695667481,0.39736270956253,0.240390899039938,0.295379054349154,0.100966449948148,0,0,0.0974578807397524,0,0,1.13365191807606,0,0,0.167884616364078,4.25017106870819,10.8855835761686,8.42497471629419,8.36036678408357,5.517293144389,217.994211250188,246.734326767847,240.616115644547,259.326452156625,184.287197818303,234.927502088197,205.206840070469,246.325698163649,254.212891440139,197.784439089195,2.59468368960442,9.17757208822371,8.70741389346084,18.7192172142586,21.3805425880542,19.4874118957015,12.6680634846921,17.1009097508282,18.2923949467335,14.6564382823003,20.0248646913289,15.6559863350443,15.3572072250607,16.5184893204563,18.6090919416187,18.5754539600399,12.9790445058238,11.1887347868949,18.5438655361488,19.283058537606,15.0862471049583,17.3926290036151,14.0677352068919,18.1683020790411,15.9985946706062,13.4537226547766,17.7440133686589,18.1518100892112,14.3952360676613,18.5176949647054,13.5243920661559,12.5100692616966,15.1415485972785,16.4233051657124,13.5034627686799,32.225564553995,9.1233327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| |||
|short_description=p1@Jph4 | |||
}} |
Revision as of 12:28, 4 August 2015
Short description: | p1@Jph4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Jph4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -35bp_to_ENSMUST00000133954_5end |
EntrezGene: | 319984 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.63e-14 | 23 |
neuroblast (sensu Vertebrata) | 8.63e-14 | 23 |
neuron | 1.20e-13 | 33 |
neuronal stem cell | 1.20e-13 | 33 |
neuroblast | 1.20e-13 | 33 |
electrically signaling cell | 1.20e-13 | 33 |
electrically responsive cell | 1.41e-09 | 39 |
electrically active cell | 1.41e-09 | 39 |
neural cell | 1.90e-08 | 43 |
ectodermal cell | 2.32e-08 | 44 |
neurectodermal cell | 2.32e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.75e-24 | 73 |
nervous system | 2.64e-23 | 75 |
neurectoderm | 9.03e-23 | 64 |
neural plate | 9.03e-23 | 64 |
presumptive neural plate | 9.03e-23 | 64 |
regional part of nervous system | 4.48e-22 | 54 |
ectoderm-derived structure | 1.97e-21 | 95 |
ectoderm | 1.97e-21 | 95 |
presumptive ectoderm | 1.97e-21 | 95 |
neural tube | 8.92e-21 | 52 |
neural rod | 8.92e-21 | 52 |
future spinal cord | 8.92e-21 | 52 |
neural keel | 8.92e-21 | 52 |
ecto-epithelium | 2.99e-20 | 73 |
gray matter | 8.65e-19 | 34 |
brain | 7.29e-18 | 47 |
future brain | 7.29e-18 | 47 |
pre-chordal neural plate | 1.85e-17 | 49 |
regional part of brain | 3.29e-17 | 46 |
anterior neural tube | 2.35e-16 | 40 |
brain grey matter | 6.28e-16 | 29 |
regional part of telencephalon | 6.28e-16 | 29 |
telencephalon | 6.28e-16 | 29 |
regional part of forebrain | 1.10e-15 | 39 |
forebrain | 1.10e-15 | 39 |
future forebrain | 1.10e-15 | 39 |
structure with developmental contribution from neural crest | 2.16e-13 | 92 |
cerebral cortex | 3.66e-11 | 21 |
cerebral hemisphere | 3.66e-11 | 21 |
pallium | 3.66e-11 | 21 |
regional part of cerebral cortex | 5.41e-09 | 17 |
occipital lobe | 1.25e-08 | 10 |
visual cortex | 1.25e-08 | 10 |
neocortex | 1.25e-08 | 10 |