FFCP PHASE1:Mm9::chr15:100701357..100701392,+: Difference between revisions
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{{FFCP|EntrezGene=20273|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=-65bp_to_uc007xsi.1_5end|description=CAGE_peak_1_at_Scn8a_5end|id=chr15:100701357..100701392,+|ontology_enrichment_celltype=CL:0000540!3.56e-15!33;CL:0000047!3.56e-15!33;CL:0000031!3.56e-15!33;CL:0000404!3.56e-15!33;CL:0000117!2.41e-13!23;CL:0000337!2.41e-13!23;CL:0000221!2.67e-10!44;CL:0000133!2.67e-10!44;CL:0002319!3.56e-10!43;CL:0000393!5.61e-10!39;CL:0000211!5.61e-10!39|ontology_enrichment_celltype_v019_2=CL:0000540,1.13e-17,33;CL:0000047,1.13e-17,33;CL:0000031,1.13e-17,33;CL:0000404,1.13e-17,33;CL:0000117,1.66e-15,23;CL:0000337,1.66e-15,23;CL:0000393,8.62e-13,39;CL:0000211,8.62e-13,39;CL:0000221,3.94e-11,44;CL:0000133,3.94e-11,44;CL:0002319,5.55e-11,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!6.48e-29!71;UBERON:0003075!6.48e-29!71;UBERON:0007284!6.48e-29!71;UBERON:0001017!7.39e-29!73;UBERON:0005743!7.39e-29!73;UBERON:0000073!1.48e-28!75;UBERON:0001016!1.48e-28!75;UBERON:0004121!1.31e-27!102;UBERON:0000924!1.31e-27!102;UBERON:0006601!1.31e-27!102;UBERON:0000033!1.15e-24!63;UBERON:0001049!5.06e-24!52;UBERON:0005068!5.06e-24!52;UBERON:0006241!5.06e-24!52;UBERON:0007135!5.06e-24!52;UBERON:0000955!3.69e-23!50;UBERON:0006238!3.69e-23!50;UBERON:0002616!1.59e-22!49;UBERON:0003056!4.97e-22!49;UBERON:0003080!9.27e-19!40;UBERON:0002780!3.95e-18!39;UBERON:0001890!3.95e-18!39;UBERON:0006240!3.95e-18!39;UBERON:0002020!2.38e-17!34;UBERON:0002791!1.66e-14!29;UBERON:0003528!1.66e-14!29;UBERON:0001893!1.66e-14!29;UBERON:0000153!2.34e-12!94;UBERON:0007811!1.36e-11!86;UBERON:0000956!3.44e-10!21;UBERON:0001869!3.44e-10!21;UBERON:0000203!3.44e-10!21;UBERON:0002619!3.57e-08!17;UBERON:0002021!4.39e-08!10;UBERON:0000411!4.39e-08!10;UBERON:0001950!4.39e-08!10;UBERON:0000468!7.40e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.61e-34,73;UBERON:0002346,1.53e-33,64;UBERON:0003075,1.53e-33,64;UBERON:0007284,1.53e-33,64;UBERON:0001016,1.94e-32,75;UBERON:0000073,3.64e-30,54;UBERON:0004121,7.94e-30,95;UBERON:0000924,7.94e-30,95;UBERON:0006601,7.94e-30,95;UBERON:0001049,2.84e-28,52;UBERON:0005068,2.84e-28,52;UBERON:0006241,2.84e-28,52;UBERON:0007135,2.84e-28,52;UBERON:0010371,1.18e-27,73;UBERON:0003056,2.24e-26,49;UBERON:0000955,1.30e-24,47;UBERON:0006238,1.30e-24,47;UBERON:0002616,7.04e-24,46;UBERON:0003080,1.67e-22,40;UBERON:0002780,9.40e-22,39;UBERON:0001890,9.40e-22,39;UBERON:0006240,9.40e-22,39;UBERON:0010314,4.91e-21,92;UBERON:0002020,7.50e-21,34;UBERON:0003528,1.81e-17,29;UBERON:0002791,1.81e-17,29;UBERON:0001893,1.81e-17,29;UBERON:0000956,2.47e-12,21;UBERON:0001869,2.47e-12,21;UBERON:0000203,2.47e-12,21;UBERON:0002619,6.18e-10,17;UBERON:0002021,2.77e-09,10;UBERON:0000411,2.77e-09,10;UBERON:0001950,2.77e-09,10|phase1_expression=1.44133962394315,0,0,0,0,0.33575854382378,0,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0,0,0.157731082679119,0,0,12.6714502325094,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0,0,0.279972843250725,0,0,0,0,0,0,0,11.1274053472779,12.1667925232568,14.5781222806421,0,0,0,0,0,1.49800055259202,0,10.3689612308478,10.8004750665353,7.78202357000113,33.7068161596488,22.0868540951614,9.92175473641128,11.5973019932066,13.7882817991503,60.5637345496638,57.0762401240789,54.2231062394539,13.1886287730194,12.2593442427229,8.85552729946492,47.7402928292361,27.0126052815206,36.8243777142112,31.8198872311561,23.9184423742493,17.5215479075783,0.681535739998656,0.906858721281426,0,0,0,0,0,0,1.40444420131752,0,0,0,2.25349471642689,0,0,0,0,0.253359865475099,0,1.48439043634778,0.258937883647172,1.1875371125186,2.25530924795977,2.13125834818499,2.7673859670727,1.80867168663147,2.23418543557839,1.63366568728578,0.741584903203122,0,0,0.161766849947409,0.220841518460394,0,0,58.2633786052979,57.3883976668867,0,0,0,0,44.4878199032323,43.9200578705881,19.9790419859454,70.2250253576797,58.047408813985,39.8953045554355,44.7785886067011,0.611036183101898,0,0,7.57590681191306,3.90361328888111,2.06911893990126,3.60124259610698,5.87748789559289,7.00775941258677,7.55870949680614,8.80796210861451,11.6416516832557,1.72454394346274,4.34943984385984,2.81521798662318,2.19195732427575,2.50242524303038,1.0447564995665,0.61734640922383,1.39323986772945,0,0,0,0.414251545071004,0,0.180062061461015,0.710234206755631,0.590292695242212,0,0,0,0.233530684734339,0,0,0.162137619091711,0,0,0.134206418760372,55.3062564723655,15.1269780197548,0,0,3.41261200856374,2.09013004674395,1.28867461322093,1.21010114774006,0.667134131534611,0.570676878337677,0.474529061544512,0.164698954724011,0.502670417600539,0.397912944082302,0,0,0,0.199141273254367,3.79335801906163,6.740662243974,4.50830942692322,5.90588850751411,6.0125271021964,5.04977903210294,2.08680572510049,0.295220295959204,0,0,0,0.166845105716094,0,0,0.202860121388503,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,1.51593129416388,0.488894929326078,0.678980343100753,1.40814148973101,0.837531287209079,1.190218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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20273 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-65bp_to_uc007xsi.1_5end | |||
|cluster_id=chr15:100701357..100701392,+ | |||
|description=CAGE_peak_1_at_Scn8a_5end | |||
|id=chr15:100701357..100701392,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.56e-15!33;CL:0000047!3.56e-15!33;CL:0000031!3.56e-15!33;CL:0000404!3.56e-15!33;CL:0000117!2.41e-13!23;CL:0000337!2.41e-13!23;CL:0000221!2.67e-10!44;CL:0000133!2.67e-10!44;CL:0002319!3.56e-10!43;CL:0000393!5.61e-10!39;CL:0000211!5.61e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.13e-17,33;CL:0000047,1.13e-17,33;CL:0000031,1.13e-17,33;CL:0000404,1.13e-17,33;CL:0000117,1.66e-15,23;CL:0000337,1.66e-15,23;CL:0000393,8.62e-13,39;CL:0000211,8.62e-13,39;CL:0000221,3.94e-11,44;CL:0000133,3.94e-11,44;CL:0002319,5.55e-11,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!6.48e-29!71;UBERON:0003075!6.48e-29!71;UBERON:0007284!6.48e-29!71;UBERON:0001017!7.39e-29!73;UBERON:0005743!7.39e-29!73;UBERON:0000073!1.48e-28!75;UBERON:0001016!1.48e-28!75;UBERON:0004121!1.31e-27!102;UBERON:0000924!1.31e-27!102;UBERON:0006601!1.31e-27!102;UBERON:0000033!1.15e-24!63;UBERON:0001049!5.06e-24!52;UBERON:0005068!5.06e-24!52;UBERON:0006241!5.06e-24!52;UBERON:0007135!5.06e-24!52;UBERON:0000955!3.69e-23!50;UBERON:0006238!3.69e-23!50;UBERON:0002616!1.59e-22!49;UBERON:0003056!4.97e-22!49;UBERON:0003080!9.27e-19!40;UBERON:0002780!3.95e-18!39;UBERON:0001890!3.95e-18!39;UBERON:0006240!3.95e-18!39;UBERON:0002020!2.38e-17!34;UBERON:0002791!1.66e-14!29;UBERON:0003528!1.66e-14!29;UBERON:0001893!1.66e-14!29;UBERON:0000153!2.34e-12!94;UBERON:0007811!1.36e-11!86;UBERON:0000956!3.44e-10!21;UBERON:0001869!3.44e-10!21;UBERON:0000203!3.44e-10!21;UBERON:0002619!3.57e-08!17;UBERON:0002021!4.39e-08!10;UBERON:0000411!4.39e-08!10;UBERON:0001950!4.39e-08!10;UBERON:0000468!7.40e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.61e-34,73;UBERON:0002346,1.53e-33,64;UBERON:0003075,1.53e-33,64;UBERON:0007284,1.53e-33,64;UBERON:0001016,1.94e-32,75;UBERON:0000073,3.64e-30,54;UBERON:0004121,7.94e-30,95;UBERON:0000924,7.94e-30,95;UBERON:0006601,7.94e-30,95;UBERON:0001049,2.84e-28,52;UBERON:0005068,2.84e-28,52;UBERON:0006241,2.84e-28,52;UBERON:0007135,2.84e-28,52;UBERON:0010371,1.18e-27,73;UBERON:0003056,2.24e-26,49;UBERON:0000955,1.30e-24,47;UBERON:0006238,1.30e-24,47;UBERON:0002616,7.04e-24,46;UBERON:0003080,1.67e-22,40;UBERON:0002780,9.40e-22,39;UBERON:0001890,9.40e-22,39;UBERON:0006240,9.40e-22,39;UBERON:0010314,4.91e-21,92;UBERON:0002020,7.50e-21,34;UBERON:0003528,1.81e-17,29;UBERON:0002791,1.81e-17,29;UBERON:0001893,1.81e-17,29;UBERON:0000956,2.47e-12,21;UBERON:0001869,2.47e-12,21;UBERON:0000203,2.47e-12,21;UBERON:0002619,6.18e-10,17;UBERON:0002021,2.77e-09,10;UBERON:0000411,2.77e-09,10;UBERON:0001950,2.77e-09,10 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0.33575854382378,0,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0,0,0.157731082679119,0,0,12.6714502325094,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0,0,0.279972843250725,0,0,0,0,0,0,0,11.1274053472779,12.1667925232568,14.5781222806421,0,0,0,0,0,1.49800055259202,0,10.3689612308478,10.8004750665353,7.78202357000113,33.7068161596488,22.0868540951614,9.92175473641128,11.5973019932066,13.7882817991503,60.5637345496638,57.0762401240789,54.2231062394539,13.1886287730194,12.2593442427229,8.85552729946492,47.7402928292361,27.0126052815206,36.8243777142112,31.8198872311561,23.9184423742493,17.5215479075783,0.681535739998656,0.906858721281426,0,0,0,0,0,0,1.40444420131752,0,0,0,2.25349471642689,0,0,0,0,0.253359865475099,0,1.48439043634778,0.258937883647172,1.1875371125186,2.25530924795977,2.13125834818499,2.7673859670727,1.80867168663147,2.23418543557839,1.63366568728578,0.741584903203122,0,0,0.161766849947409,0.220841518460394,0,0,58.2633786052979,57.3883976668867,0,0,0,0,44.4878199032323,43.9200578705881,19.9790419859454,70.2250253576797,58.047408813985,39.8953045554355,44.7785886067011,0.611036183101898,0,0,7.57590681191306,3.90361328888111,2.06911893990126,3.60124259610698,5.87748789559289,7.00775941258677,7.55870949680614,8.80796210861451,11.6416516832557,1.72454394346274,4.34943984385984,2.81521798662318,2.19195732427575,2.50242524303038,1.0447564995665,0.61734640922383,1.39323986772945,0,0,0,0.414251545071004,0,0.180062061461015,0.710234206755631,0.590292695242212,0,0,0,0.233530684734339,0,0,0.162137619091711,0,0,0.134206418760372,55.3062564723655,15.1269780197548,0,0,3.41261200856374,2.09013004674395,1.28867461322093,1.21010114774006,0.667134131534611,0.570676878337677,0.474529061544512,0.164698954724011,0.502670417600539,0.397912944082302,0,0,0,0.199141273254367,3.79335801906163,6.740662243974,4.50830942692322,5.90588850751411,6.0125271021964,5.04977903210294,2.08680572510049,0.295220295959204,0,0,0,0.166845105716094,0,0,0.202860121388503,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,1.51593129416388,0.488894929326078,0.678980343100753,1.40814148973101,0.837531287209079,1.19021820443007,0.780534591431195,0.630540576424764,0.664394068946325,0.318909537314974,0.327726629431476,0.345369963731791,0.144649058581512,0,0,0,0,48.1651769963376,50.752660294424,0,0,2.52406575533005,5.0757036758563,4.09304455692318,4.54040716109849,3.11918143715352,7.35998980050964,2.02405350837447,3.21481443702443,5.13874111330481,34.0600595407115,0,2.13678724400706,2.44330439030364,0.164970122972535,0,1.21390318077491,1.209294227859,0.565815239267694,0.295301892880773,1.53717573971964,0.775284879504663,0.727067458955011,0.712994756769443,0.316036757935816,0,0,15.6602218646742,3.6012218806262,1.94038025674132,5.5727629108214,4.96552654198366,7.13475270408282,7.24015690649332,3.04464949114599,0.23467170806371,0.847328283455281,0,0,0.322928853391811,0.542816324353403,0,0.328281799490123,0.291480836629851,44.8729230865433,0,0.82554747185289,3.70389054739423,0.941842285023455,0.27338845544205,0.228778173206523,0,0,0,0,1.42351197111511,1.62655573701479,0.972048067396211,0.836353184057875,0.436725127492355,0.269728692769641,0.495920734352016,0,0.129614973291793,0,1.12738587736838,0.747582730219894,0.66183396182839,1.55560950675238,0.904118764344118,0.337912250981556,0.938857909166032,0.39061315453185,1.46803082195995,2.17425708743405,0.864090018773596,0,1.01362607645082,0.821687657318618,0.389762468933385,0.358053391334963,0,0,0,0,0,0,0,0.0962118416403295,0,0,0.443971906748129,0.269141569828427,0.167884616364078,0.19318959403219,0,0,0,0,45.7448992519824,47.8738245967464,44.6858500482729,60.6641733673217,50.6961064630275,57.4099362016172,65.4771825224852,59.8927200288213,51.6582346241993,54.3648327339411,2.17953429926771,5.98537310101547,5.12200817262403,3.8897074730927,2.09613162627982,3.8607136774503,3.33370091702423,3.91466608753899,3.85103051510178,5.30664144703975,3.04175159868288,2.82939512079114,4.21386783614471,3.64943368707755,4.19278923375977,3.33405583898152,4.40360438590451,4.43691207066522,2.47251540481984,4.41596760403192,2.40008476669791,3.37204031702741,4.05341522910446,4.0696996657052,3.57615645578256,3.04612588410035,4.024415403201,2.63069711437843,4.07412341537585,2.24456908663095,4.38949567059444,3.64466584789585,2.45538625901814,3.87342102964915,3.08650577569826,6.24526444844865,4.44470056046276,2.57845264857958,1.14772999241306,0.441182838239031,1.85494268496337 | |||
|short_description=p1@Scn8a | |||
}} |
Revision as of 23:10, 4 August 2015
Short description: | p1@Scn8a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Scn8a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -65bp_to_uc007xsi.1_5end |
EntrezGene: | 20273 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.13e-17 | 33 |
neuronal stem cell | 1.13e-17 | 33 |
neuroblast | 1.13e-17 | 33 |
electrically signaling cell | 1.13e-17 | 33 |
CNS neuron (sensu Vertebrata) | 1.66e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.66e-15 | 23 |
electrically responsive cell | 8.62e-13 | 39 |
electrically active cell | 8.62e-13 | 39 |
ectodermal cell | 3.94e-11 | 44 |
neurectodermal cell | 3.94e-11 | 44 |
neural cell | 5.55e-11 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.61e-34 | 73 |
neurectoderm | 1.53e-33 | 64 |
neural plate | 1.53e-33 | 64 |
presumptive neural plate | 1.53e-33 | 64 |
nervous system | 1.94e-32 | 75 |
regional part of nervous system | 3.64e-30 | 54 |
ectoderm-derived structure | 7.94e-30 | 95 |
ectoderm | 7.94e-30 | 95 |
presumptive ectoderm | 7.94e-30 | 95 |
neural tube | 2.84e-28 | 52 |
neural rod | 2.84e-28 | 52 |
future spinal cord | 2.84e-28 | 52 |
neural keel | 2.84e-28 | 52 |
ecto-epithelium | 1.18e-27 | 73 |
pre-chordal neural plate | 2.24e-26 | 49 |
brain | 1.30e-24 | 47 |
future brain | 1.30e-24 | 47 |
regional part of brain | 7.04e-24 | 46 |
anterior neural tube | 1.67e-22 | 40 |
regional part of forebrain | 9.40e-22 | 39 |
forebrain | 9.40e-22 | 39 |
future forebrain | 9.40e-22 | 39 |
structure with developmental contribution from neural crest | 4.91e-21 | 92 |
gray matter | 7.50e-21 | 34 |
brain grey matter | 1.81e-17 | 29 |
regional part of telencephalon | 1.81e-17 | 29 |
telencephalon | 1.81e-17 | 29 |
cerebral cortex | 2.47e-12 | 21 |
cerebral hemisphere | 2.47e-12 | 21 |
pallium | 2.47e-12 | 21 |
regional part of cerebral cortex | 6.18e-10 | 17 |
occipital lobe | 2.77e-09 | 10 |
visual cortex | 2.77e-09 | 10 |
neocortex | 2.77e-09 | 10 |