FFCP PHASE1:Mm9::chr17:25702962..25702967,-: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2197|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:25702962..25702967,-|id=chr17:25702962..25702967,-|ontology_enrichment_celltype=CL:0000221!1.55e-14!44;CL:0000133!1.55e-14!44;CL:0002319!1.87e-14!43;CL:0000540!5.01e-14!33;CL:0000047!5.01e-14!33;CL:0000031!5.01e-14!33;CL:0000404!5.01e-14!33;CL:0000055!1.49e-11!50;CL:0000393!2.57e-11!39;CL:0000211!2.57e-11!39;CL:0000117!6.15e-11!23;CL:0000337!6.15e-11!23;CL:0002321!3.39e-08!70;CL:0000220!3.39e-08!70|ontology_enrichment_celltype_v019_2=CL:0000540,3.28e-18,33;CL:0000047,3.28e-18,33;CL:0000031,3.28e-18,33;CL:0000404,3.28e-18,33;CL:0002319,7.13e-18,43;CL:0000221,3.02e-17,44;CL:0000133,3.02e-17,44;CL:0000117,5.32e-15,23;CL:0000337,5.32e-15,23;CL:0000393,3.91e-14,39;CL:0000211,3.91e-14,39;CL:0002321,1.04e-10,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.41e-25!73;UBERON:0005743!2.41e-25!73;UBERON:0000073!7.72e-25!75;UBERON:0001016!7.72e-25!75;UBERON:0004121!1.72e-21!102;UBERON:0000924!1.72e-21!102;UBERON:0006601!1.72e-21!102;UBERON:0002346!1.57e-18!71;UBERON:0003075!1.57e-18!71;UBERON:0007284!1.57e-18!71;UBERON:0000033!1.86e-17!63;UBERON:0001049!5.33e-17!52;UBERON:0005068!5.33e-17!52;UBERON:0006241!5.33e-17!52;UBERON:0007135!5.33e-17!52;UBERON:0002020!9.74e-16!34;UBERON:0000955!1.49e-15!50;UBERON:0006238!1.49e-15!50;UBERON:0002616!5.95e-15!49;UBERON:0003056!8.16e-15!49;UBERON:0002791!1.43e-12!29;UBERON:0003528!1.43e-12!29;UBERON:0001893!1.43e-12!29;UBERON:0003080!2.59e-12!40;UBERON:0002780!5.85e-12!39;UBERON:0001890!5.85e-12!39;UBERON:0006240!5.85e-12!39;UBERON:0007811!9.41e-10!86;UBERON:0000153!1.57e-09!94;UBERON:0000956!1.69e-09!21;UBERON:0001869!1.69e-09!21;UBERON:0000203!1.69e-09!21;UBERON:0002619!8.22e-08!17;UBERON:0002021!5.01e-07!10;UBERON:0000411!5.01e-07!10;UBERON:0001950!5.01e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.30e-28,73;UBERON:0001016,1.97e-27,75;UBERON:0004121,9.73e-25,95;UBERON:0000924,9.73e-25,95;UBERON:0006601,9.73e-25,95;UBERON:0002346,1.62e-22,64;UBERON:0003075,1.62e-22,64;UBERON:0007284,1.62e-22,64;UBERON:0002020,3.72e-21,34;UBERON:0000073,1.07e-20,54;UBERON:0010371,2.51e-19,73;UBERON:0001049,4.71e-19,52;UBERON:0005068,4.71e-19,52;UBERON:0006241,4.71e-19,52;UBERON:0007135,4.71e-19,52;UBERON:0003528,3.09e-17,29;UBERON:0002791,3.09e-17,29;UBERON:0001893,3.09e-17,29;UBERON:0003056,5.61e-16,49;UBERON:0000955,1.31e-15,47;UBERON:0006238,1.31e-15,47;UBERON:0002616,9.63e-15,46;UBERON:0003080,7.82e-14,40;UBERON:0000956,8.15e-14,21;UBERON:0001869,8.15e-14,21;UBERON:0000203,8.15e-14,21;UBERON:0010314,2.17e-13,92;UBERON:0002780,2.79e-13,39;UBERON:0001890,2.79e-13,39;UBERON:0006240,2.79e-13,39;UBERON:0002619,5.38e-11,17;UBERON:0002021,8.42e-11,10;UBERON:0000411,8.42e-11,10;UBERON:0001950,8.42e-11,10|phase1_expression=2.40223270657191,0.697950815278722,3.18499467572675,0,0,1.51091344720701,5.37309073369709,0,0.140788722151667,0.234064526321993,0,0.0797721589953364,0,0,0,0.202475267389826,0,0,0,0,1.78590909317247,0,0,5.27974995218242,5.96464130774642,1.72269589234506,2.58457197695445,1.939241094173,0,0,2.21730510655305,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,6.32272953503295,0.219686182734472,0,0.979904951377538,1.43752564364972,0,0,0,0,0,0.515672092277442,0.606949382578793,2.64495489636016,0,0,0,0,0,0,6.5912024314049,11.1423308543251,2.28117147078651,1.89008313664367,2.10324961351382,9.42648248532552,6.62605622854841,6.98197555525238,2.1086003624012,3.67687514644008,2.20231761998777,2.68143409978894,1.99688493233117,0.131886287730194,1.00636407962651,1.04182674111352,6.42120897703176,8.4414391504752,4.43114918552749,8.2496003932627,6.69146899755784,0.745597783301202,0.075726193333184,0.0755715601067855,0,0,0,0,0.649776417447669,0,0.140444420131752,0.170430322578058,0.259786004602869,0,0.422530259330042,1.28326477414318,0,0,0,0,0,0.11418387971906,0,0.148442139064825,1.04091196059682,0,0.922461989024234,0,0.23517741427141,0,0,0,0,0.485300549842228,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,1.3481157546434,0.915001205637253,2.1361239859187,1.56441888173049,2.30143911597297,1.87009240103604,2.43361894601636,0.407357455401265,0,0,0,0.390361328888111,0.459804208866946,0.540186389416048,3.91832526372859,3.74200745332303,8.07116437794554,4.40398105430725,1.03481348295606,0,0,0.703804496655795,1.31517439456545,0.834141747676794,0.348252166522167,0.205782136407943,1.39323986772945,0,0,0,0.414251545071004,0.234526059981096,0,0,0,0,0,0.268273401399619,0,0.16455984991348,0,0,0.146199987425332,0.219550115291051,0,0.420579897128254,1.02904612379284,0,0,0.853153002140936,0.928946687441754,0.38660238396628,0.201683524623343,0.22237804384487,0,0,0,0.251335208800269,0,0,0,0,0,0.569003702859245,0.342745537829186,0,0.407302655690628,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491764273019036,0,1.9266070798535,3.7507739709505,0,0.504941854408746,2.2085575359138,0,2.80050417052639,0.955875191810208,0.891194696329576,1.98153571552183,2.83367491172426,2.63030272120181,1.58115111178609,3.21321316421807,0,0.712262414669021,0.162886959353576,0,0,0.485561272309963,0,0,0.295301892880773,0,0,0.363533729477506,0.356497378384721,0,0,0,0,0.18006109403131,0,0.643011105094777,0.354680467284547,0.178368817602071,0.987294123612726,0.304464949114599,0.23467170806371,0,0,0,0,0.0603129249281559,0,0,0,2.03967832211561,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.324016022465404,0.418176592028937,0,0.134864346384821,0.0826534557253359,0,0,0,2.25477175473676,1.94371509857172,2.15096037594227,1.55560950675238,3.7456348808542,3.21016638432478,3.16864544343536,2.604087696879,2.30690557736564,0.966336483304024,1.72818003754719,0,0.202725215290164,0.205421914329655,0,0,0,0,0,0.100966449948148,0,0,0,0.0962118416403295,0,0,0,0.0897138566094757,0,0,0,0,0,0,3.3885110557024,3.22227665555024,3.43737308063638,5.15559547031063,2.05524755931193,3.7769694869485,2.02506750069542,2.70192721934532,3.17199686288943,2.07104124700728,0.31136204275253,0,1.02440163452481,0.729320151204882,0.419226325255965,0.367687016900028,0.666740183404846,0.206035057238894,0,0,0,0.565879024158229,0.468207537349412,0.448176066834085,0.459483751644906,0,0.347652977834566,0.77163688185482,0.412085900803307,0.735994600671987,0,1.06485483695602,0.476872379894642,1.0174249164263,0.564656282491984,0.761531471025089,0.914639864363863,0.526139422875686,0.814824683075171,0,0.237270036248348,0.886540341380071,0,0.154936841185966,0.964533054905707,0.499621155875892,0.233931608445408,0.214871054048298,0.191288332068843,1.32354851471709,0.463735671240843|short_description=p@chr17:25702962..25702967,-}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2197 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr17:25702962..25702967,- | |||
|description=CAGE_peak_at_chr17:25702962..25702967,- | |||
|id=chr17:25702962..25702967,- | |||
|ontology_enrichment_celltype=CL:0000221!1.55e-14!44;CL:0000133!1.55e-14!44;CL:0002319!1.87e-14!43;CL:0000540!5.01e-14!33;CL:0000047!5.01e-14!33;CL:0000031!5.01e-14!33;CL:0000404!5.01e-14!33;CL:0000055!1.49e-11!50;CL:0000393!2.57e-11!39;CL:0000211!2.57e-11!39;CL:0000117!6.15e-11!23;CL:0000337!6.15e-11!23;CL:0002321!3.39e-08!70;CL:0000220!3.39e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.28e-18,33;CL:0000047,3.28e-18,33;CL:0000031,3.28e-18,33;CL:0000404,3.28e-18,33;CL:0002319,7.13e-18,43;CL:0000221,3.02e-17,44;CL:0000133,3.02e-17,44;CL:0000117,5.32e-15,23;CL:0000337,5.32e-15,23;CL:0000393,3.91e-14,39;CL:0000211,3.91e-14,39;CL:0002321,1.04e-10,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.41e-25!73;UBERON:0005743!2.41e-25!73;UBERON:0000073!7.72e-25!75;UBERON:0001016!7.72e-25!75;UBERON:0004121!1.72e-21!102;UBERON:0000924!1.72e-21!102;UBERON:0006601!1.72e-21!102;UBERON:0002346!1.57e-18!71;UBERON:0003075!1.57e-18!71;UBERON:0007284!1.57e-18!71;UBERON:0000033!1.86e-17!63;UBERON:0001049!5.33e-17!52;UBERON:0005068!5.33e-17!52;UBERON:0006241!5.33e-17!52;UBERON:0007135!5.33e-17!52;UBERON:0002020!9.74e-16!34;UBERON:0000955!1.49e-15!50;UBERON:0006238!1.49e-15!50;UBERON:0002616!5.95e-15!49;UBERON:0003056!8.16e-15!49;UBERON:0002791!1.43e-12!29;UBERON:0003528!1.43e-12!29;UBERON:0001893!1.43e-12!29;UBERON:0003080!2.59e-12!40;UBERON:0002780!5.85e-12!39;UBERON:0001890!5.85e-12!39;UBERON:0006240!5.85e-12!39;UBERON:0007811!9.41e-10!86;UBERON:0000153!1.57e-09!94;UBERON:0000956!1.69e-09!21;UBERON:0001869!1.69e-09!21;UBERON:0000203!1.69e-09!21;UBERON:0002619!8.22e-08!17;UBERON:0002021!5.01e-07!10;UBERON:0000411!5.01e-07!10;UBERON:0001950!5.01e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.30e-28,73;UBERON:0001016,1.97e-27,75;UBERON:0004121,9.73e-25,95;UBERON:0000924,9.73e-25,95;UBERON:0006601,9.73e-25,95;UBERON:0002346,1.62e-22,64;UBERON:0003075,1.62e-22,64;UBERON:0007284,1.62e-22,64;UBERON:0002020,3.72e-21,34;UBERON:0000073,1.07e-20,54;UBERON:0010371,2.51e-19,73;UBERON:0001049,4.71e-19,52;UBERON:0005068,4.71e-19,52;UBERON:0006241,4.71e-19,52;UBERON:0007135,4.71e-19,52;UBERON:0003528,3.09e-17,29;UBERON:0002791,3.09e-17,29;UBERON:0001893,3.09e-17,29;UBERON:0003056,5.61e-16,49;UBERON:0000955,1.31e-15,47;UBERON:0006238,1.31e-15,47;UBERON:0002616,9.63e-15,46;UBERON:0003080,7.82e-14,40;UBERON:0000956,8.15e-14,21;UBERON:0001869,8.15e-14,21;UBERON:0000203,8.15e-14,21;UBERON:0010314,2.17e-13,92;UBERON:0002780,2.79e-13,39;UBERON:0001890,2.79e-13,39;UBERON:0006240,2.79e-13,39;UBERON:0002619,5.38e-11,17;UBERON:0002021,8.42e-11,10;UBERON:0000411,8.42e-11,10;UBERON:0001950,8.42e-11,10 | |||
|phase1_expression=2.40223270657191,0.697950815278722,3.18499467572675,0,0,1.51091344720701,5.37309073369709,0,0.140788722151667,0.234064526321993,0,0.0797721589953364,0,0,0,0.202475267389826,0,0,0,0,1.78590909317247,0,0,5.27974995218242,5.96464130774642,1.72269589234506,2.58457197695445,1.939241094173,0,0,2.21730510655305,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,6.32272953503295,0.219686182734472,0,0.979904951377538,1.43752564364972,0,0,0,0,0,0.515672092277442,0.606949382578793,2.64495489636016,0,0,0,0,0,0,6.5912024314049,11.1423308543251,2.28117147078651,1.89008313664367,2.10324961351382,9.42648248532552,6.62605622854841,6.98197555525238,2.1086003624012,3.67687514644008,2.20231761998777,2.68143409978894,1.99688493233117,0.131886287730194,1.00636407962651,1.04182674111352,6.42120897703176,8.4414391504752,4.43114918552749,8.2496003932627,6.69146899755784,0.745597783301202,0.075726193333184,0.0755715601067855,0,0,0,0,0.649776417447669,0,0.140444420131752,0.170430322578058,0.259786004602869,0,0.422530259330042,1.28326477414318,0,0,0,0,0,0.11418387971906,0,0.148442139064825,1.04091196059682,0,0.922461989024234,0,0.23517741427141,0,0,0,0,0.485300549842228,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,1.3481157546434,0.915001205637253,2.1361239859187,1.56441888173049,2.30143911597297,1.87009240103604,2.43361894601636,0.407357455401265,0,0,0,0.390361328888111,0.459804208866946,0.540186389416048,3.91832526372859,3.74200745332303,8.07116437794554,4.40398105430725,1.03481348295606,0,0,0.703804496655795,1.31517439456545,0.834141747676794,0.348252166522167,0.205782136407943,1.39323986772945,0,0,0,0.414251545071004,0.234526059981096,0,0,0,0,0,0.268273401399619,0,0.16455984991348,0,0,0.146199987425332,0.219550115291051,0,0.420579897128254,1.02904612379284,0,0,0.853153002140936,0.928946687441754,0.38660238396628,0.201683524623343,0.22237804384487,0,0,0,0.251335208800269,0,0,0,0,0,0.569003702859245,0.342745537829186,0,0.407302655690628,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491764273019036,0,1.9266070798535,3.7507739709505,0,0.504941854408746,2.2085575359138,0,2.80050417052639,0.955875191810208,0.891194696329576,1.98153571552183,2.83367491172426,2.63030272120181,1.58115111178609,3.21321316421807,0,0.712262414669021,0.162886959353576,0,0,0.485561272309963,0,0,0.295301892880773,0,0,0.363533729477506,0.356497378384721,0,0,0,0,0.18006109403131,0,0.643011105094777,0.354680467284547,0.178368817602071,0.987294123612726,0.304464949114599,0.23467170806371,0,0,0,0,0.0603129249281559,0,0,0,2.03967832211561,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.324016022465404,0.418176592028937,0,0.134864346384821,0.0826534557253359,0,0,0,2.25477175473676,1.94371509857172,2.15096037594227,1.55560950675238,3.7456348808542,3.21016638432478,3.16864544343536,2.604087696879,2.30690557736564,0.966336483304024,1.72818003754719,0,0.202725215290164,0.205421914329655,0,0,0,0,0,0.100966449948148,0,0,0,0.0962118416403295,0,0,0,0.0897138566094757,0,0,0,0,0,0,3.3885110557024,3.22227665555024,3.43737308063638,5.15559547031063,2.05524755931193,3.7769694869485,2.02506750069542,2.70192721934532,3.17199686288943,2.07104124700728,0.31136204275253,0,1.02440163452481,0.729320151204882,0.419226325255965,0.367687016900028,0.666740183404846,0.206035057238894,0,0,0,0.565879024158229,0.468207537349412,0.448176066834085,0.459483751644906,0,0.347652977834566,0.77163688185482,0.412085900803307,0.735994600671987,0,1.06485483695602,0.476872379894642,1.0174249164263,0.564656282491984,0.761531471025089,0.914639864363863,0.526139422875686,0.814824683075171,0,0.237270036248348,0.886540341380071,0,0.154936841185966,0.964533054905707,0.499621155875892,0.233931608445408,0.214871054048298,0.191288332068843,1.32354851471709,0.463735671240843 | |||
|short_description=p@chr17:25702962..25702967,- | |||
}} | |||
Latest revision as of 11:09, 4 August 2015
| Short description: | p@chr17:25702962..25702967, - |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_at_chr17:25702962..25702967, - |
| Coexpression cluster: | MCL_coexpression_mm9:2197 |
| Association with transcript: | NA |
| EntrezGene: | NA |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neuron | 3.28e-18 | 33 |
| neuronal stem cell | 3.28e-18 | 33 |
| neuroblast | 3.28e-18 | 33 |
| electrically signaling cell | 3.28e-18 | 33 |
| neural cell | 7.13e-18 | 43 |
| ectodermal cell | 3.02e-17 | 44 |
| neurectodermal cell | 3.02e-17 | 44 |
| CNS neuron (sensu Vertebrata) | 5.32e-15 | 23 |
| neuroblast (sensu Vertebrata) | 5.32e-15 | 23 |
| electrically responsive cell | 3.91e-14 | 39 |
| electrically active cell | 3.91e-14 | 39 |
| embryonic cell | 1.04e-10 | 70 |
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 1.30e-28 | 73 |
| nervous system | 1.97e-27 | 75 |
| ectoderm-derived structure | 9.73e-25 | 95 |
| ectoderm | 9.73e-25 | 95 |
| presumptive ectoderm | 9.73e-25 | 95 |
| neurectoderm | 1.62e-22 | 64 |
| neural plate | 1.62e-22 | 64 |
| presumptive neural plate | 1.62e-22 | 64 |
| gray matter | 3.72e-21 | 34 |
| regional part of nervous system | 1.07e-20 | 54 |
| ecto-epithelium | 2.51e-19 | 73 |
| neural tube | 4.71e-19 | 52 |
| neural rod | 4.71e-19 | 52 |
| future spinal cord | 4.71e-19 | 52 |
| neural keel | 4.71e-19 | 52 |
| brain grey matter | 3.09e-17 | 29 |
| regional part of telencephalon | 3.09e-17 | 29 |
| telencephalon | 3.09e-17 | 29 |
| pre-chordal neural plate | 5.61e-16 | 49 |
| brain | 1.31e-15 | 47 |
| future brain | 1.31e-15 | 47 |
| regional part of brain | 9.63e-15 | 46 |
| anterior neural tube | 7.82e-14 | 40 |
| cerebral cortex | 8.15e-14 | 21 |
| cerebral hemisphere | 8.15e-14 | 21 |
| pallium | 8.15e-14 | 21 |
| structure with developmental contribution from neural crest | 2.17e-13 | 92 |
| regional part of forebrain | 2.79e-13 | 39 |
| forebrain | 2.79e-13 | 39 |
| future forebrain | 2.79e-13 | 39 |
| regional part of cerebral cortex | 5.38e-11 | 17 |
| occipital lobe | 8.42e-11 | 10 |
| visual cortex | 8.42e-11 | 10 |
| neocortex | 8.42e-11 | 10 |