FFCP PHASE1:Hg19::chr7:8008444..8008460,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=113263 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18713 | |||
|TSSclassifier=strong | |||
|UniProt=Q86VQ1 | |||
|association_with_transcript=19bp_to_ENST00000223145_5end | |||
|description=CAGE_peak_3_at_GLCCI1_5end | |||
|id=chr7:8008444..8008460,+ | |||
|ontology_enrichment_celltype=CL:0000542!4.33e-18!53;CL:0000051!4.33e-18!53;CL:0000838!1.03e-17!52;CL:0000084!1.53e-09!25;CL:0000827!1.53e-09!25;CL:0000791!8.59e-09!18;CL:0000789!8.59e-09!18;CL:0002420!8.59e-09!18;CL:0002419!8.59e-09!18;CL:0000790!8.59e-09!18;CL:0000945!9.34e-08!24;CL:0000826!9.34e-08!24;CL:0000738!2.06e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000542;3.40e-11;53!CL:0000084;6.27e-10;25!CL:0000791;2.31e-09;18!CL:0000789;2.31e-09;18!CL:0002419;2.31e-09;18!CL:0000945;1.36e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,5.79e-19,53;CL:0000051,5.79e-19,53;CL:0000838,1.49e-18,52;CL:0000084,5.68e-10,25;CL:0000827,5.68e-10,25;CL:0000791,1.71e-09,18;CL:0000789,1.71e-09,18;CL:0002420,1.71e-09,18;CL:0002419,1.71e-09,18;CL:0000790,1.71e-09,18;CL:0000945,5.21e-08,24;CL:0000826,5.21e-08,24 | |||
|ontology_enrichment_development_v019=CL:0000051;3.40e-11;53!CL:0000790;2.31e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.52e-18!115;UBERON:0005743!5.76e-15!86;UBERON:0001017!1.01e-14!82;UBERON:0001049!1.80e-14!57;UBERON:0005068!1.80e-14!57;UBERON:0006241!1.80e-14!57;UBERON:0007135!1.80e-14!57;UBERON:0003080!6.59e-14!42;UBERON:0000073!8.81e-14!94;UBERON:0001016!8.81e-14!94;UBERON:0002780!1.16e-13!41;UBERON:0001890!1.16e-13!41;UBERON:0006240!1.16e-13!41;UBERON:0000955!9.74e-13!69;UBERON:0006238!9.74e-13!69;UBERON:0002616!2.91e-12!59;UBERON:0001893!4.34e-12!34;UBERON:0002791!9.81e-12!33;UBERON:0001869!1.25e-11!32;UBERON:0002020!1.61e-11!34;UBERON:0003528!1.61e-11!34;UBERON:0002619!7.65e-10!22;UBERON:0001950!8.56e-10!20;UBERON:0003056!1.59e-09!61;UBERON:0000956!2.44e-09!25;UBERON:0000203!2.44e-09!25;UBERON:0003075!2.13e-08!86;UBERON:0007284!2.13e-08!86;UBERON:0002346!2.99e-08!90;UBERON:0000153!3.11e-08!129;UBERON:0007811!3.11e-08!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.30e-11;34!UBERON:0001869;2.95e-11;32!UBERON:0002791;3.54e-11;32!UBERON:0002780;8.48e-11;41!UBERON:0001890;8.48e-11;41!UBERON:0003528;1.16e-10;34!UBERON:0002020;1.16e-10;34!UBERON:0002619;1.35e-10;22!UBERON:0001950;1.66e-10;20!UBERON:0000956;3.51e-10;25!UBERON:0000203;3.51e-10;25!UBERON:0000073;9.31e-10;53!UBERON:0002616;9.31e-10;53!UBERON:0000955;7.18e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.68e-18,114;UBERON:0001017,2.14e-15,81;UBERON:0000073,2.56e-15,53;UBERON:0002616,2.56e-15,53;UBERON:0001049,3.20e-15,56;UBERON:0005068,3.20e-15,56;UBERON:0006241,3.20e-15,56;UBERON:0007135,3.20e-15,56;UBERON:0002780,1.75e-14,41;UBERON:0001890,1.75e-14,41;UBERON:0003080,1.75e-14,41;UBERON:0006240,1.75e-14,41;UBERON:0001016,2.13e-14,89;UBERON:0000955,1.83e-13,68;UBERON:0006238,1.83e-13,68;UBERON:0001893,4.14e-13,34;UBERON:0001869,1.33e-12,32;UBERON:0002791,1.72e-12,32;UBERON:0003528,1.74e-12,34;UBERON:0002020,1.74e-12,34;UBERON:0002619,1.20e-10,22;UBERON:0001950,1.36e-10,20;UBERON:0003075,3.85e-10,82;UBERON:0007284,3.85e-10,82;UBERON:0000956,4.30e-10,25;UBERON:0000203,4.30e-10,25;UBERON:0002346,1.02e-09,86;UBERON:0003056,1.17e-09,61;UBERON:0011216,4.95e-09,223;UBERON:0004121,2.34e-07,171;UBERON:0000924,2.34e-07,171;UBERON:0006601,2.34e-07,171 | |||
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| |||
|short_description=p3@GLCCI1 | |||
}} |
Revision as of 15:40, 22 January 2014
Short description: | p3@GLCCI1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GLCCI1_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENST00000223145_5end |
EntrezGene: | GLCCI1 |
HGNC: | 18713 |
UniProt: | Q86VQ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 5.79e-19 | 53 |
common lymphoid progenitor | 5.79e-19 | 53 |
lymphoid lineage restricted progenitor cell | 1.49e-18 | 52 |
T cell | 5.68e-10 | 25 |
pro-T cell | 5.68e-10 | 25 |
mature alpha-beta T cell | 1.71e-09 | 18 |
alpha-beta T cell | 1.71e-09 | 18 |
immature T cell | 1.71e-09 | 18 |
mature T cell | 1.71e-09 | 18 |
immature alpha-beta T cell | 1.71e-09 | 18 |
lymphocyte of B lineage | 5.21e-08 | 24 |
pro-B cell | 5.21e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.68e-18 | 114 |
central nervous system | 2.14e-15 | 81 |
regional part of nervous system | 2.56e-15 | 53 |
regional part of brain | 2.56e-15 | 53 |
neural tube | 3.20e-15 | 56 |
neural rod | 3.20e-15 | 56 |
future spinal cord | 3.20e-15 | 56 |
neural keel | 3.20e-15 | 56 |
regional part of forebrain | 1.75e-14 | 41 |
forebrain | 1.75e-14 | 41 |
anterior neural tube | 1.75e-14 | 41 |
future forebrain | 1.75e-14 | 41 |
nervous system | 2.13e-14 | 89 |
brain | 1.83e-13 | 68 |
future brain | 1.83e-13 | 68 |
telencephalon | 4.14e-13 | 34 |
cerebral hemisphere | 1.33e-12 | 32 |
regional part of telencephalon | 1.72e-12 | 32 |
brain grey matter | 1.74e-12 | 34 |
gray matter | 1.74e-12 | 34 |
regional part of cerebral cortex | 1.20e-10 | 22 |
neocortex | 1.36e-10 | 20 |
neural plate | 3.85e-10 | 82 |
presumptive neural plate | 3.85e-10 | 82 |
cerebral cortex | 4.30e-10 | 25 |
pallium | 4.30e-10 | 25 |
neurectoderm | 1.02e-09 | 86 |
pre-chordal neural plate | 1.17e-09 | 61 |
organ system subdivision | 4.95e-09 | 223 |
ectoderm-derived structure | 2.34e-07 | 171 |
ectoderm | 2.34e-07 | 171 |
presumptive ectoderm | 2.34e-07 | 171 |