FFCP PHASE1:Hg19::chr7:91509986..91510046,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7978 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21463 | |||
|TSSclassifier=strong | |||
|UniProt=Q99551,B4DPR9,C9JE25,C9JNM8 | |||
|association_with_transcript=0bp_to_ENST00000351870,ENST00000406735,ENST00000419292,ENST00000442961,ENST00000454222,ENST00000456229,NM_006980,uc003ulc.1,uc010let.1,uc010leu.1,uc011khm.1_5end | |||
|description=CAGE_peak_1_at_MTERF_5end | |||
|id=chr7:91509986..91510046,- | |||
|ontology_enrichment_celltype=CL:0000542!7.39e-14!53;CL:0000051!7.39e-14!53;CL:0000838!2.17e-13!52;CL:0000945!4.00e-08!24;CL:0000826!4.00e-08!24 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.76e-08;53!CL:0000945;3.80e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,7.28e-14,53;CL:0000051,7.28e-14,53;CL:0000838,2.14e-13,52;CL:0000945,3.93e-08,24;CL:0000826,3.93e-08,24 | |||
|ontology_enrichment_development_v019=CL:0000051;2.76e-08;53!UBERON:0006601;3.59e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.42e-16!82;UBERON:0000073!2.68e-16!94;UBERON:0001016!2.68e-16!94;UBERON:0001049!6.58e-16!57;UBERON:0005068!6.58e-16!57;UBERON:0006241!6.58e-16!57;UBERON:0007135!6.58e-16!57;UBERON:0005743!1.23e-15!86;UBERON:0002780!4.07e-15!41;UBERON:0001890!4.07e-15!41;UBERON:0006240!4.07e-15!41;UBERON:0003080!2.06e-14!42;UBERON:0000955!4.27e-14!69;UBERON:0006238!4.27e-14!69;UBERON:0007023!4.72e-14!115;UBERON:0002616!2.24e-13!59;UBERON:0002020!1.16e-12!34;UBERON:0003528!1.16e-12!34;UBERON:0001893!1.26e-12!34;UBERON:0002791!3.34e-12!33;UBERON:0001869!9.81e-12!32;UBERON:0002346!4.26e-11!90;UBERON:0000153!1.13e-10!129;UBERON:0007811!1.13e-10!129;UBERON:0003075!5.48e-10!86;UBERON:0007284!5.48e-10!86;UBERON:0000033!1.49e-09!123;UBERON:0000924!3.78e-09!173;UBERON:0006601!3.78e-09!173;UBERON:0000956!1.54e-08!25;UBERON:0000203!1.54e-08!25;UBERON:0003056!1.60e-08!61;UBERON:0004121!2.79e-08!169;UBERON:0002619!1.10e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.76e-11;41!UBERON:0001890;3.76e-11;41!UBERON:0001893;4.57e-11;34!UBERON:0003528;5.46e-11;34!UBERON:0002020;5.46e-11;34!UBERON:0002791;7.39e-11;32!UBERON:0001869;1.22e-10;32!UBERON:0000073;2.36e-10;53!UBERON:0002616;2.36e-10;53!UBERON:0000956;1.65e-08;25!UBERON:0000203;1.65e-08;25!UBERON:0002619;1.22e-07;22!UBERON:0000955;5.90e-07;68!UBERON:0001016;6.20e-07;83!UBERON:0001017;8.21e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.01e-17,89;UBERON:0001017,7.98e-17,81;UBERON:0001049,1.61e-16,56;UBERON:0005068,1.61e-16,56;UBERON:0006241,1.61e-16,56;UBERON:0007135,1.61e-16,56;UBERON:0000073,1.03e-15,53;UBERON:0002616,1.03e-15,53;UBERON:0002780,4.07e-15,41;UBERON:0001890,4.07e-15,41;UBERON:0003080,4.07e-15,41;UBERON:0006240,4.07e-15,41;UBERON:0000955,1.40e-14,68;UBERON:0006238,1.40e-14,68;UBERON:0007023,1.24e-13,114;UBERON:0003528,1.16e-12,34;UBERON:0002020,1.16e-12,34;UBERON:0001893,1.26e-12,34;UBERON:0002791,6.84e-12,32;UBERON:0001869,9.81e-12,32;UBERON:0002346,1.24e-10,86;UBERON:0003075,1.57e-09,82;UBERON:0007284,1.57e-09,82;UBERON:0003056,3.19e-09,61;UBERON:0011216,7.81e-09,223;UBERON:0004121,9.29e-09,171;UBERON:0000924,9.29e-09,171;UBERON:0006601,9.29e-09,171;UBERON:0000956,1.54e-08,25;UBERON:0000203,1.54e-08,25;UBERON:0002619,1.10e-07,22;UBERON:0010371,7.26e-07,104 | |||
|phase1_expression=10.3556676184217,7.06531728840244,13.2497139850213,7.00513088471913,12.0679495495368,6.10636966870258,7.59899634504932,10.7392378482561,7.05201196139564,2.7030733015166,0.697801167972428,2.62129646556207,1.84636884759917,12.2528689430446,5.30235801164665,7.39557661096953,4.82155622419182,8.03341099426111,4.87932798790507,4.062994916534,2.85600967741954,2.5076377718247,28.6235987131057,14.23494020758,10.4200390863686,19.4854184657276,16.584319068889,17.3163718890094,4.32700704533794,11.8987113410136,4.79929982279836,3.67768489791571,0.90361775633475,2.21852406100073,13.5567601015528,16.0651232710786,12.0376180127287,3.87796785972314,3.81034450193269,3.25516306073778,11.867520134716,16.518576966968,14.6818073551486,6.10672602874172,6.04601509902095,8.49044214157357,2.32429036905685,2.46700732813095,6.50383378879718,2.8769239232215,3.58624989140741,6.14853797710322,3.7922024881028,5.80936215225443,2.70852973188684,5.64727018627814,6.5497476013883,8.53949240891322,2.44867113896722,5.77672248736969,1.91801137739712,2.63881040149373,3.39088217956774,5.96714650745772,2.32167390902867,4.53908179752912,3.11411124497787,2.26123798731069,5.21482918420201,5.64690996233303,3.63239701580021,5.52416453981347,7.91155968602211,8.66146673878961,9.35458919846192,8.38634582033504,6.17807471305723,6.75796017786778,9.16135844173357,9.9754460309437,10.1447505371536,11.3251775334073,17.5996244461323,25.6685147293202,17.7901850772711,18.3493995703598,25.2249471832688,22.4153451582248,21.8144808019005,20.0351288452426,10.8150464130795,12.3319809767897,9.93910393125595,9.25199300053181,5.04457706683382,11.8522838148785,15.1466522987651,7.07419372948497,7.60725546298184,23.907668840867,24.1182477308857,23.6723902867367,11.6896037044747,17.6028521878574,16.7925367260657,22.817991142113,25.4555631939115,11.2720361358594,15.4770623596255,11.3462154176537,12.712100818149,22.6046406873341,19.1289666479058,20.8681845909976,16.7256838087963,20.3956816855619,14.9455992504749,17.8686271650968,23.0247919737748,17.2025323735012,18.8814201618361,19.9594929334159,23.7908688142881,20.2218845623981,17.4903017173284,21.0731754319175,14.7803039445788,14.9188989986302,9.36040685242276,10.7170058873271,2.43806866313962,8.71911117614727,5.62595272111533,7.22878304769133,6.01605492763067,7.09747942908036,5.5670016293577,7.29952305453954,18.8124286156495,12.8603050528287,8.25646985515385,7.20384915237419,1.45718115317017,3.33705998505986,15.2537275017701,11.6666923990509,11.0355107230658,13.1169843367938,13.1558829479429,10.4008100372278,4.17401055470081,3.4409383804245,3.81854551768354,1.69592382577203,3.35599548967925,6.32771496462155,3.13492449805216,10.3366703667732,8.89415656716776,9.70689777017544,3.22263453687318,4.56163263431108,2.19655851793353,4.41195696415042,4.86085168729056,11.3410654920781,6.06229306090659,4.27923625836624,0,0.949265659568129,1.83201743930407,3.9534125230819,3.87780264148325,1.74437620857014,5.4666914686485,9.87717990983722,19.5965587603564,10.8997915884549,3.90135220418193,3.36406560085384,4.2699598291882,5.67335361359468,11.5148083097914,6.33140158727534,6.04809041519797,2.27036141467397,5.76175924479999,2.34321431833797,6.55536161343673,8.55707732316674,8.81747215255626,6.45889742540707,6.96053660782966,10.8147121160731,13.2700211315681,9.82674538494144,7.85275936935817,10.6920257155385,2.22540236350701,1.82032272387605,3.59309070908119,9.09015015351958,9.38388899039731,15.5155904671142,8.34057479673592,7.66219489497549,3.60571341375832,6.4656344401212,15.2481190335533,12.3863285514769,11.0204588602972,11.1033705551229,9.99609533612857,9.27505944164265,7.44467425326359,18.5653965465393,9.93857452644226,13.3789900349381,10.3095886479375,12.2851003182297,10.6502877754984,8.66468044757706,7.29110546935097,9.08326009867495,13.6373060295417,7.1701148847251,7.56236978003491,8.34937540425357,8.01738205799677,7.56725701612204,7.56962552626885,8.39447925874409,3.12899064659632,5.14592750554308,2.76269842704961,9.75172648867156,8.66255378003503,6.27026040211173,6.74338760312407,6.26628677697053,6.17646247301406,6.10062443458737,7.1181185733329,3.64044532032444,3.53198637225623,6.92544882503503,3.69077727312324,1.40241773803446,4.115740113314,4.41026134156626,12.6755034821831,6.87979051674338,9.45263850690247,15.8926715789274,17.9563120272946,9.95093299731448,9.76777540136768,4.49607013030478,5.12697759299317,11.3883787544991,1.62904152655162,2.07986957055916,4.3299402607582,14.6072310268597,5.87043471179108,5.63029146268188,2.31492756288305,5.32711626256875,4.74122638775565,12.8772924314231,14.0343693469816,11.4662089918226,6.53977114070404,8.43604505880993,17.1341770762837,12.7597587518148,8.41850113406774,8.71901815541886,1.15014803749563,47.2956708380106,15.4084759523146,10.3664057770386,9.80015683235338,7.70078843900918,10.7311441353766,3.4378958300245,3.51652341630141,1.71072446022705,7.91771693815591,4.20480280981484,10.861404439962,3.47606361470618,0.87192013766656,9.6806537283654,9.69537868183333,3.5765644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| |||
|short_description=p1@MTERF | |||
}} |
Revision as of 17:48, 22 January 2014
Short description: | p1@MTERF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MTERF_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000351870, ENST00000406735, ENST00000419292, ENST00000442961, ENST00000454222, ENST00000456229, NM_006980, uc003ulc.1, uc010let.1, uc010leu.1, uc011khm.1_5end |
EntrezGene: | MTERF |
HGNC: | 21463 |
UniProt: | Q99551B4DPR9C9JE25C9JNM8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 7.28e-14 | 53 |
common lymphoid progenitor | 7.28e-14 | 53 |
lymphoid lineage restricted progenitor cell | 2.14e-13 | 52 |
lymphocyte of B lineage | 3.93e-08 | 24 |
pro-B cell | 3.93e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.01e-17 | 89 |
central nervous system | 7.98e-17 | 81 |
neural tube | 1.61e-16 | 56 |
neural rod | 1.61e-16 | 56 |
future spinal cord | 1.61e-16 | 56 |
neural keel | 1.61e-16 | 56 |
regional part of nervous system | 1.03e-15 | 53 |
regional part of brain | 1.03e-15 | 53 |
regional part of forebrain | 4.07e-15 | 41 |
forebrain | 4.07e-15 | 41 |
anterior neural tube | 4.07e-15 | 41 |
future forebrain | 4.07e-15 | 41 |
brain | 1.40e-14 | 68 |
future brain | 1.40e-14 | 68 |
adult organism | 1.24e-13 | 114 |
brain grey matter | 1.16e-12 | 34 |
gray matter | 1.16e-12 | 34 |
telencephalon | 1.26e-12 | 34 |
regional part of telencephalon | 6.84e-12 | 32 |
cerebral hemisphere | 9.81e-12 | 32 |
neurectoderm | 1.24e-10 | 86 |
neural plate | 1.57e-09 | 82 |
presumptive neural plate | 1.57e-09 | 82 |
pre-chordal neural plate | 3.19e-09 | 61 |
organ system subdivision | 7.81e-09 | 223 |
ectoderm-derived structure | 9.29e-09 | 171 |
ectoderm | 9.29e-09 | 171 |
presumptive ectoderm | 9.29e-09 | 171 |
cerebral cortex | 1.54e-08 | 25 |
pallium | 1.54e-08 | 25 |
regional part of cerebral cortex | 1.10e-07 | 22 |
ecto-epithelium | 7.26e-07 | 104 |