FFCP PHASE1:Mm9::chr5:42099374..42099409,-: Difference between revisions
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{{FFCP|EntrezGene=100972|HGNC=|UniProt=Q99KL7,Q3TWY9,Q9CZQ8|association_with_transcript=0bp_to_ENSMUST00000031011,NM_027295,uc008xha.1,uc008xhb.1_5end|description=CAGE_peak_1_at_Rab28_5end|id=chr5:42099374..42099409,-|ontology_enrichment_celltype=CL:0000117!3.77e-09!23;CL:0000337!3.77e-09!23;CL:0002321!1.45e-08!70;CL:0000220!1.45e-08!70;CL:0000055!1.81e-08!50;CL:0000221!3.16e-08!44;CL:0000133!3.16e-08!44;CL:0002319!9.25e-08!43;CL:0000393!1.57e-07!39;CL:0000211!1.57e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.77e-09,23;CL:0000337,3.77e-09,23;CL:0002321,1.45e-08,70;CL:0000221,3.16e-08,44;CL:0000133,3.16e-08,44;CL:0002319,9.25e-08,43;CL:0000393,1.57e-07,39;CL:0000211,1.57e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!7.84e-18!63;UBERON:0000073!2.52e-17!75;UBERON:0001016!2.52e-17!75;UBERON:0001017!5.52e-17!73;UBERON:0005743!5.52e-17!73;UBERON:0001049!3.55e-15!52;UBERON:0005068!3.55e-15!52;UBERON:0006241!3.55e-15!52;UBERON:0007135!3.55e-15!52;UBERON:0000955!3.99e-15!50;UBERON:0006238!3.99e-15!50;UBERON:0003056!4.23e-15!49;UBERON:0002346!8.74e-15!71;UBERON:0003075!8.74e-15!71;UBERON:0007284!8.74e-15!71;UBERON:0002616!1.34e-14!49;UBERON:0004121!6.33e-14!102;UBERON:0000924!6.33e-14!102;UBERON:0006601!6.33e-14!102;UBERON:0003080!3.63e-13!40;UBERON:0002020!5.03e-13!34;UBERON:0002780!6.84e-13!39;UBERON:0001890!6.84e-13!39;UBERON:0006240!6.84e-13!39;UBERON:0002791!2.53e-11!29;UBERON:0003528!2.53e-11!29;UBERON:0001893!2.53e-11!29;UBERON:0000956!1.10e-08!21;UBERON:0001869!1.10e-08!21;UBERON:0000203!1.10e-08!21;UBERON:0002619!1.73e-07!17;UBERON:0004111!1.96e-07!122;UBERON:0000025!7.57e-07!114;UBERON:0007811!9.78e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.67e-17,92;UBERON:0001016,2.52e-17,75;UBERON:0002346,3.62e-17,64;UBERON:0003075,3.62e-17,64;UBERON:0007284,3.62e-17,64;UBERON:0001017,5.52e-17,73;UBERON:0000073,2.00e-16,54;UBERON:0004121,1.49e-15,95;UBERON:0000924,1.49e-15,95;UBERON:0006601,1.49e-15,95;UBERON:0001049,3.55e-15,52;UBERON:0005068,3.55e-15,52;UBERON:0006241,3.55e-15,52;UBERON:0007135,3.55e-15,52;UBERON:0003056,4.23e-15,49;UBERON:0010371,3.26e-14,73;UBERON:0000955,1.64e-13,47;UBERON:0006238,1.64e-13,47;UBERON:0003080,3.63e-13,40;UBERON:0002020,5.03e-13,34;UBERON:0002616,5.35e-13,46;UBERON:0002780,6.84e-13,39;UBERON:0001890,6.84e-13,39;UBERON:0006240,6.84e-13,39;UBERON:0003528,2.53e-11,29;UBERON:0002791,2.53e-11,29;UBERON:0001893,2.53e-11,29;UBERON:0000956,1.10e-08,21;UBERON:0001869,1.10e-08,21;UBERON:0000203,1.10e-08,21;UBERON:0002619,1.73e-07,17;UBERON:0004111,1.96e-07,122;UBERON:0000025,7.57e-07,114|phase1_expression=16.8156289460034,8.72438519098403,6.3699893514535,4.83942738090928,5.50985302940982,6.88305014838748,4.67225281191051,4.26106967357202,1.54867594366833,2.80877431586392,1.54096171402954,3.5099749957948,2.73921167889929,4.37102012094987,3.99731714178795,2.02475267389826,4.19737126876888,4.88966356305268,3.15363197293199,4.2438965179803,13.7770130044733,3.67376519443276,2.35079810225042,3.67982572424835,3.67054849707472,5.16808767703518,6.46142994238612,4.30942465371778,3.04037471130198,7.56090389279792,3.99114919179548,3.17515336729816,2.46025915033828,0,7.51014211353314,7.14808975041517,6.53341940039581,35.1566569819002,33.5974198145234,40.8348520299563,29.9998058895817,27.3218193983378,43.2104214197727,6.6725313527056,6.18399280439039,4.9557623083654,2.34717403304412,5.88667922227206,11.2039953194581,8.94377535741704,5.17949760013841,14.3752564364972,5.87239121202077,0.725362142011344,1.34437519656986,9.26133969729409,11.1748041576115,10.3134418455488,9.91350658212029,8.46385566835253,6.97214543856797,5.08266798103698,3.55717918444456,7.64914759689189,4.94433181283487,5.6838409195688,8.08920298399693,11.5265491596466,9.53944433237994,8.91039192989158,9.04397333810943,12.5686433137674,10.6016899656774,7.83941114975706,8.91362880469598,10.1114066527102,9.91042928994498,19.9192247412893,17.2039317246993,7.78129097608144,9.78917786545783,6.77187381723788,19.821992929098,17.4456409109821,20.3221669543157,8.2496003932627,8.68467252874528,8.38797506213853,7.64834552665159,7.10372665003784,5.79728977403356,5.16254326188832,4.75979933595425,5.93673510801599,7.14754059192436,3.13618820968135,10.5333315098814,10.0553890321054,12.4697282209377,7.42013106471715,14.5068722369981,12.8326477414318,28.028576367731,14.2213340630666,3.89683873820185,5.06719730950197,1.51657333504435,10.0481814152773,3.6251303710604,7.71899123137089,4.68410382268567,3.04465478312141,2.99800146432876,4.22023393547343,5.05631440683531,7.1629957057915,3.70792451601561,5.06097749219691,6.19227386364912,11.3236794963186,10.8212344045593,7.27312879702833,0,6.14839673724249,9.63454851341893,4.08731288333746,8.38705871541442,7.19883277192089,8.00542430560307,8.68785708547972,7.77751024791665,7.66491547888473,9.03886464999838,9.2057564638919,9.97382613885888,9.08551073179443,5.70300437561771,6.22034853050465,4.80173241023982,13.2578369208479,5.33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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:100972 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q99KL7,uniprot:Q3TWY9,uniprot:Q9CZQ8 | |||
|association_with_transcript=0bp_to_ENSMUST00000031011,NM_027295,uc008xha.1,uc008xhb.1_5end | |||
|cluster_id=chr5:42099374..42099409,- | |||
|description=CAGE_peak_1_at_Rab28_5end | |||
|id=chr5:42099374..42099409,- | |||
|ontology_enrichment_celltype=CL:0000117!3.77e-09!23;CL:0000337!3.77e-09!23;CL:0002321!1.45e-08!70;CL:0000220!1.45e-08!70;CL:0000055!1.81e-08!50;CL:0000221!3.16e-08!44;CL:0000133!3.16e-08!44;CL:0002319!9.25e-08!43;CL:0000393!1.57e-07!39;CL:0000211!1.57e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.77e-09,23;CL:0000337,3.77e-09,23;CL:0002321,1.45e-08,70;CL:0000221,3.16e-08,44;CL:0000133,3.16e-08,44;CL:0002319,9.25e-08,43;CL:0000393,1.57e-07,39;CL:0000211,1.57e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!7.84e-18!63;UBERON:0000073!2.52e-17!75;UBERON:0001016!2.52e-17!75;UBERON:0001017!5.52e-17!73;UBERON:0005743!5.52e-17!73;UBERON:0001049!3.55e-15!52;UBERON:0005068!3.55e-15!52;UBERON:0006241!3.55e-15!52;UBERON:0007135!3.55e-15!52;UBERON:0000955!3.99e-15!50;UBERON:0006238!3.99e-15!50;UBERON:0003056!4.23e-15!49;UBERON:0002346!8.74e-15!71;UBERON:0003075!8.74e-15!71;UBERON:0007284!8.74e-15!71;UBERON:0002616!1.34e-14!49;UBERON:0004121!6.33e-14!102;UBERON:0000924!6.33e-14!102;UBERON:0006601!6.33e-14!102;UBERON:0003080!3.63e-13!40;UBERON:0002020!5.03e-13!34;UBERON:0002780!6.84e-13!39;UBERON:0001890!6.84e-13!39;UBERON:0006240!6.84e-13!39;UBERON:0002791!2.53e-11!29;UBERON:0003528!2.53e-11!29;UBERON:0001893!2.53e-11!29;UBERON:0000956!1.10e-08!21;UBERON:0001869!1.10e-08!21;UBERON:0000203!1.10e-08!21;UBERON:0002619!1.73e-07!17;UBERON:0004111!1.96e-07!122;UBERON:0000025!7.57e-07!114;UBERON:0007811!9.78e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.67e-17,92;UBERON:0001016,2.52e-17,75;UBERON:0002346,3.62e-17,64;UBERON:0003075,3.62e-17,64;UBERON:0007284,3.62e-17,64;UBERON:0001017,5.52e-17,73;UBERON:0000073,2.00e-16,54;UBERON:0004121,1.49e-15,95;UBERON:0000924,1.49e-15,95;UBERON:0006601,1.49e-15,95;UBERON:0001049,3.55e-15,52;UBERON:0005068,3.55e-15,52;UBERON:0006241,3.55e-15,52;UBERON:0007135,3.55e-15,52;UBERON:0003056,4.23e-15,49;UBERON:0010371,3.26e-14,73;UBERON:0000955,1.64e-13,47;UBERON:0006238,1.64e-13,47;UBERON:0003080,3.63e-13,40;UBERON:0002020,5.03e-13,34;UBERON:0002616,5.35e-13,46;UBERON:0002780,6.84e-13,39;UBERON:0001890,6.84e-13,39;UBERON:0006240,6.84e-13,39;UBERON:0003528,2.53e-11,29;UBERON:0002791,2.53e-11,29;UBERON:0001893,2.53e-11,29;UBERON:0000956,1.10e-08,21;UBERON:0001869,1.10e-08,21;UBERON:0000203,1.10e-08,21;UBERON:0002619,1.73e-07,17;UBERON:0004111,1.96e-07,122;UBERON:0000025,7.57e-07,114 | |||
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| |||
|short_description=p1@Rab28 | |||
}} |
Revision as of 10:02, 4 August 2015
Short description: | p1@Rab28 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rab28_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000031011, NM_027295, uc008xha.1, uc008xhb.1_5end |
EntrezGene: | 100972 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.77e-09 | 23 |
neuroblast (sensu Vertebrata) | 3.77e-09 | 23 |
embryonic cell | 1.45e-08 | 70 |
ectodermal cell | 3.16e-08 | 44 |
neurectodermal cell | 3.16e-08 | 44 |
neural cell | 9.25e-08 | 43 |
electrically responsive cell | 1.57e-07 | 39 |
electrically active cell | 1.57e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.67e-17 | 92 |
nervous system | 2.52e-17 | 75 |
neurectoderm | 3.62e-17 | 64 |
neural plate | 3.62e-17 | 64 |
presumptive neural plate | 3.62e-17 | 64 |
central nervous system | 5.52e-17 | 73 |
regional part of nervous system | 2.00e-16 | 54 |
ectoderm-derived structure | 1.49e-15 | 95 |
ectoderm | 1.49e-15 | 95 |
presumptive ectoderm | 1.49e-15 | 95 |
neural tube | 3.55e-15 | 52 |
neural rod | 3.55e-15 | 52 |
future spinal cord | 3.55e-15 | 52 |
neural keel | 3.55e-15 | 52 |
pre-chordal neural plate | 4.23e-15 | 49 |
ecto-epithelium | 3.26e-14 | 73 |
brain | 1.64e-13 | 47 |
future brain | 1.64e-13 | 47 |
anterior neural tube | 3.63e-13 | 40 |
gray matter | 5.03e-13 | 34 |
regional part of brain | 5.35e-13 | 46 |
regional part of forebrain | 6.84e-13 | 39 |
forebrain | 6.84e-13 | 39 |
future forebrain | 6.84e-13 | 39 |
brain grey matter | 2.53e-11 | 29 |
regional part of telencephalon | 2.53e-11 | 29 |
telencephalon | 2.53e-11 | 29 |
cerebral cortex | 1.10e-08 | 21 |
cerebral hemisphere | 1.10e-08 | 21 |
pallium | 1.10e-08 | 21 |
regional part of cerebral cortex | 1.73e-07 | 17 |
anatomical conduit | 1.96e-07 | 122 |
tube | 7.57e-07 | 114 |