FF:12652-134H6: Difference between revisions

Revision as of 22:58, 9 July 2012

Name:	Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	aorta
dev stage	NA
sex	NA
age	NA
cell type	smooth muscle cell, vascular associated
cell line	NA
company	NA
collaboration	Levon Khachigian (University of New South Wales)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0679
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.26
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.693
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0331
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.208
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.198
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.668
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.317
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.208
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.203
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.786
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0574
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.797
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.284
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.238
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.504
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.823
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.879
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.391
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.518
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13349

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.523
MA0003.1	MA0003.1	0.406
MA0004.1	MA0004.1	0.624
MA0006.1	MA0006.1	0.295
MA0007.1	MA0007.1	0.323
MA0009.1	MA0009.1	0.777
MA0014.1	MA0014.1	0.966
MA0017.1	MA0017.1	0.632
MA0018.2	MA0018.2	2.27702e-5
MA0019.1	MA0019.1	0.964
MA0024.1	MA0024.1	4.00198e-6
MA0025.1	MA0025.1	0.00204
MA0027.1	MA0027.1	0.814
MA0028.1	MA0028.1	0.578
MA0029.1	MA0029.1	0.984
MA0030.1	MA0030.1	0.0801
MA0031.1	MA0031.1	0.157
MA0035.2	MA0035.2	0.0852
MA0038.1	MA0038.1	0.00193
MA0039.2	MA0039.2	0.0527
MA0040.1	MA0040.1	0.381
MA0041.1	MA0041.1	0.61
MA0042.1	MA0042.1	0.897
MA0043.1	MA0043.1	1.52323e-4
MA0046.1	MA0046.1	0.0555
MA0047.2	MA0047.2	0.33
MA0048.1	MA0048.1	0.233
MA0050.1	MA0050.1	6.61446e-5
MA0051.1	MA0051.1	0.0754
MA0052.1	MA0052.1	0.05
MA0055.1	MA0055.1	0.306
MA0057.1	MA0057.1	0.42
MA0058.1	MA0058.1	0.47
MA0059.1	MA0059.1	0.129
MA0060.1	MA0060.1	5.26532e-11
MA0061.1	MA0061.1	0.151
MA0062.2	MA0062.2	0.00876
MA0065.2	MA0065.2	0.171
MA0066.1	MA0066.1	0.073
MA0067.1	MA0067.1	0.00329
MA0068.1	MA0068.1	0.235
MA0069.1	MA0069.1	0.418
MA0070.1	MA0070.1	0.634
MA0071.1	MA0071.1	0.721
MA0072.1	MA0072.1	0.849
MA0073.1	MA0073.1	0.879
MA0074.1	MA0074.1	0.18
MA0076.1	MA0076.1	0.124
MA0077.1	MA0077.1	0.251
MA0078.1	MA0078.1	0.214
MA0079.2	MA0079.2	0.0589
MA0080.2	MA0080.2	8.55821e-6
MA0081.1	MA0081.1	0.136
MA0083.1	MA0083.1	0.00746
MA0084.1	MA0084.1	0.282
MA0087.1	MA0087.1	0.393
MA0088.1	MA0088.1	0.402
MA0090.1	MA0090.1	0.184
MA0091.1	MA0091.1	0.107
MA0092.1	MA0092.1	0.118
MA0093.1	MA0093.1	0.568
MA0099.2	MA0099.2	0.00444
MA0100.1	MA0100.1	0.189
MA0101.1	MA0101.1	0.753
MA0102.2	MA0102.2	0.145
MA0103.1	MA0103.1	0.826
MA0104.2	MA0104.2	0.752
MA0105.1	MA0105.1	1.79712e-4
MA0106.1	MA0106.1	1.96428e-4
MA0107.1	MA0107.1	0.791
MA0108.2	MA0108.2	0.985
MA0111.1	MA0111.1	0.922
MA0112.2	MA0112.2	0.00331
MA0113.1	MA0113.1	0.516
MA0114.1	MA0114.1	0.679
MA0115.1	MA0115.1	0.194
MA0116.1	MA0116.1	0.021
MA0117.1	MA0117.1	0.58
MA0119.1	MA0119.1	0.0343
MA0122.1	MA0122.1	0.731
MA0124.1	MA0124.1	0.385
MA0125.1	MA0125.1	0.213
MA0131.1	MA0131.1	0.131
MA0135.1	MA0135.1	0.261
MA0136.1	MA0136.1	3.16353e-4
MA0137.2	MA0137.2	0.0974
MA0138.2	MA0138.2	0.227
MA0139.1	MA0139.1	0.208
MA0140.1	MA0140.1	0.527
MA0141.1	MA0141.1	0.273
MA0142.1	MA0142.1	0.615
MA0143.1	MA0143.1	0.241
MA0144.1	MA0144.1	0.568
MA0145.1	MA0145.1	0.224
MA0146.1	MA0146.1	0.807
MA0147.1	MA0147.1	0.84
MA0148.1	MA0148.1	0.839
MA0149.1	MA0149.1	0.154
MA0150.1	MA0150.1	0.755
MA0152.1	MA0152.1	0.0449
MA0153.1	MA0153.1	0.295
MA0154.1	MA0154.1	0.0312
MA0155.1	MA0155.1	0.307
MA0156.1	MA0156.1	0.0238
MA0157.1	MA0157.1	0.614
MA0159.1	MA0159.1	0.145
MA0160.1	MA0160.1	0.426
MA0162.1	MA0162.1	0.0303
MA0163.1	MA0163.1	1.55672e-6
MA0164.1	MA0164.1	0.749
MA0258.1	MA0258.1	0.106
MA0259.1	MA0259.1	0.61

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13349

Novel motif	Logo	P-value
1	1	0.178
10	10	0.322
100	100	0.304
101	101	0.911
102	102	0.849
103	103	0.118
104	104	0.874
105	105	0.484
106	106	0.0323
107	107	0.125
108	108	0.257
109	109	0.202
11	11	0.0613
110	110	0.126
111	111	0.139
112	112	0.211
113	113	0.0622
114	114	0.0151
115	115	0.334
116	116	0.0596
117	117	0.182
118	118	0.552
119	119	0.195
12	12	0.818
120	120	0.0343
121	121	0.993
122	122	0.114
123	123	0.145
124	124	0.975
125	125	0.322
126	126	0.432
127	127	0.711
128	128	0.113
129	129	0.811
13	13	0.281
130	130	0.586
131	131	0.685
132	132	0.985
133	133	0.68
134	134	0.773
135	135	0.402
136	136	0.964
137	137	0.143
138	138	0.877
139	139	0.222
14	14	0.75
140	140	0.107
141	141	0.628
142	142	0.879
143	143	0.0308
144	144	0.259
145	145	0.288
146	146	0.848
147	147	0.196
148	148	0.0409
149	149	0.00802
15	15	0.442
150	150	0.217
151	151	0.666
152	152	0.079
153	153	0.723
154	154	0.678
155	155	0.109
156	156	0.923
157	157	0.182
158	158	0.0308
159	159	0.109
16	16	0.0546
160	160	0.0425
161	161	0.965
162	162	0.136
163	163	0.648
164	164	0.0247
165	165	0.916
166	166	0.439
167	167	0.486
168	168	0.605
169	169	0.0836
17	17	0.0786
18	18	0.0767
19	19	0.0541
2	2	0.576
20	20	0.954
21	21	0.451
22	22	0.576
23	23	0.163
24	24	0.775
25	25	0.554
26	26	0.228
27	27	0.253
28	28	0.345
29	29	0.158
3	3	0.117
30	30	0.905
31	31	0.514
32	32	3.88192e-5
33	33	0.375
34	34	0.652
35	35	0.0974
36	36	0.235
37	37	0.017
38	38	0.576
39	39	0.37
4	4	0.912
40	40	0.37
41	41	0.692
42	42	0.632
43	43	0.16
44	44	0.0502
45	45	0.741
46	46	0.0501
47	47	0.184
48	48	0.235
49	49	0.337
5	5	0.448
50	50	0.744
51	51	0.548
52	52	0.776
53	53	0.551
54	54	0.446
55	55	0.357
56	56	0.504
57	57	0.143
58	58	0.985
59	59	0.0408
6	6	0.63
60	60	0.388
61	61	0.617
62	62	0.274
63	63	0.223
64	64	0.799
65	65	0.144
66	66	0.78
67	67	0.284
68	68	0.805
69	69	0.43
7	7	0.933
70	70	0.0287
71	71	0.0888
72	72	0.512
73	73	0.0328
74	74	0.0581
75	75	0.235
76	76	0.375
77	77	0.0309
78	78	0.429
79	79	0.00318
8	8	0.019
80	80	0.568
81	81	0.245
82	82	0.0377
83	83	0.959
84	84	0.938
85	85	0.121
86	86	0.626
87	87	0.175
88	88	0.274
89	89	0.0332
9	9	0.481
90	90	0.0791
91	91	0.526
92	92	0.123
93	93	0.567
94	94	0.325
95	95	0.229
96	96	0.305
97	97	0.597
98	98	0.97
99	99	0.078

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13349

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000556 human Aortic Smooth Muscle cells 0min after treatment with IL1b sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000340 (IL1-beta treatment sample)
0000556 (human Aortic Smooth Muscle cells 0min after treatment with IL1b sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.98!94.94!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.75!54.77!SIM2;;chr1:170633348..170633399,+!p2@PRRX1!1.53!44.55!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.40!216.90!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.39!23.37!FOXG1;;chr14:29236269..29236285,+!p3@FOXG1!1.37!22.64!FOXG1;;chr1:170632285..170632309,+!p1@PRRX1!1.34!23.37!PRRX1;;chr14:29234581..29234601,+!p2@FOXG1!1.33!20.45!FOXG1;;chr12:66218598..66218645,+!p2@HMGA2!1.24!75.22!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.24!43.09!HIC1;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.53!PRRX1;;chr8:11561684..11561751,+!p1@GATA4!1.19!14.61!GATA4;;chr12:66218923..66218934,+!p14@HMGA2!1.17!13.88!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.10!11.68!EHF;;chr11:46299199..46299233,+!p1@CREB3L1!1.08!57.69!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!1.08!10.95!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!1.08!10.95!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!1.07!41.63!HHEX;;chr3:141087393..141087426,+!p3@ZBTB38!1.05!41.63!ZBTB38;;chr12:66218255..66218304,+!p3@HMGA2!0.99!24.10!HMGA2;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.22!RUNX2;;chr2:19558373..19558392,-!p1@OSR1!0.98!24.10!OSR1;;chr1:170632959..170632987,+!p4@PRRX1!0.98!9.49!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.96!37.98!FOXD1;;chr17:46621937..46621966,-!p2@HOXB2!0.96!22.64!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.96!9.49!BNC1;;chr17:46622205..46622218,-!p3@HOXB2!0.96!9.49!HOXB2;;chr8:55370720..55370733,+!p2@SOX17!0.96!8.03!SOX17;;chr11:61520075..61520136,+!p1@C11orf9!0.92!16.07!C11orf9;;chr1:170632723..170632739,+!p8@PRRX1!0.92!7.30!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.91!12.42!CREB3L1;;chr3:141105705..141105770,+!p4@ZBTB38!0.91!8.76!ZBTB38;;chr19:42636586..42636607,-!p1@POU2F2!0.90!19.72!POU2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.90!8.76!FOXF1;;chr1:151032860..151032918,+!p1@MLLT11!0.89!84.72!MLLT11;;chr17:46622070..46622109,-!p1@HOXB2!0.88!15.34!HOXB2;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.57!TBX20;;chr1:170632115..170632136,+!p9@PRRX1!0.88!6.57!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.88!6.57!SIM2;;chr15:96876966..96877017,+!p12@NR2F2!0.87!9.49!NR2F2;;chr2:239756739..239756755,+!p2@TWIST2!0.86!10.95!TWIST2;;chr3:157823517..157823562,-!p1@SHOX2!0.85!6.57!SHOX2;;chr17:46688334..46688385,-!p1@HOXB7!0.84!8.76!HOXB7;;chr12:66218212..66218244,+!p5@HMGA2!0.84!8.76!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!0.84!5.84!HOXB6;;chr2:102091144..102091183,-!p2@RFX8!0.84!5.84!RFX8;;chr1:170633058..170633084,+!p5@PRRX1!0.84!5.84!PRRX1;;chr15:96869255..96869291,+!p6@NR2F2!0.83!10.95!NR2F2;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.49!MLLT11;;chr2:239756671..239756732,+!p1@TWIST2!0.80!18.26!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!0.79!9.49!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!0.79!5.84!HOXB2;;chr21:38071462..38071474,+!p3@SIM2!0.79!5.11!SIM2;;chr5:139492456..139492489,+!p7@PURA!0.79!5.11!PURA;;chr6:134210243..134210257,+!p1@TCF21!0.79!5.11!TCF21;;chr1:37940170..37940190,+!p1@ZC3H12A!0.75!63.54!ZC3H12A;;chr17:41622765..41622821,-!p2@ETV4!0.75!7.30!ETV4;;chr11:65687362..65687436,+!p3@DRAP1!0.74!22.64!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.73!21.91!TOX2;;chr1:170632051..170632081,+!p16@PRRX1!0.73!4.38!PRRX1;;chr11:46333934..46333963,+!p5@CREB3L1!0.73!4.38!CREB3L1;;chr12:66357214..66357233,+!p13@HMGA2!0.73!4.38!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.73!4.38!HMGA2;;chr17:46655672..46655697,-!p3@HOXB4!0.73!4.38!HOXB4;;chr7:27169801..27169844,-!p2@HOXA4!0.73!4.38!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.73!4.38!HOXA5;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.38!KDM5D;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!343.98!TAX1BP3;;chr11:128563948..128564003,+!p1@FLI1!0.72!57.69!FLI1;;chr5:72743793..72743855,-!p4@FOXD1!0.72!5.11!FOXD1;;chr6:43140149..43140177,+!p8@SRF!0.70!4.38!SRF;;chr17:1958388..1958404,+!p1@HIC1!0.69!28.48!HIC1;;chr12:66218183..66218209,+!p4@HMGA2!0.69!8.03!HMGA2;;chr1:221052776..221052799,+!p1@HLX!0.68!7.30!HLX;;chr17:41623009..41623053,-!p4@ETV4!0.68!6.57!ETV4;;chr8:72756267..72756296,-!p4@MSC!0.68!5.84!MSC;;chr8:72756213..72756243,-!p5@MSC!0.68!5.11!MSC;;chr5:72744445..72744466,-!p2@FOXD1!0.67!6.57!FOXD1;;chr6:21597600..21597664,+!p3@SOX4!0.67!6.57!SOX4;;chr12:66218573..66218596,+!p7@HMGA2!0.67!5.84!HMGA2;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.65!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!0.67!3.65!HOXA3;;chr7:27183291..27183324,-!p1@HOXA5!0.67!3.65!HOXA5;;chr16:30406423..30406447,+!p4@ZNF48!0.67!3.65!ZNF48;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.65!ZNF668;;chr17:46655578..46655589,-!p4@HOXB4!0.67!3.65!HOXB4;;chr17:46659728..46659749,-!p3@HOXB3!0.67!3.65!HOXB3;;chr19:9609272..9609297,-!p1@ZNF560!0.67!3.65!ZNF560;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.65!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.67!3.65!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.67!3.65!PRRX1;;chr21:38071488..38071502,+!p4@SIM2!0.67!3.65!SIM2;;chr7:26191809..26191890,+!p1@NFE2L3!0.66!20.45!NFE2L3;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@SP100!0.20!54.77!SP100;;chr15:96873921..96873946,+!p1@NR2F2!0.20!40.17!NR2F2;;chr20:48807875..48807982,+!p2@CEBPB!0.20!31.40!CEBPB;;chr11:47236489..47236567,+!p2@DDB2!0.20!18.99!DDB2;;chr4:95128999..95129056,+!p2@SMARCAD1!0.20!14.61!SMARCAD1;;chr2:208031542..208031595,-!p2@KLF7!0.20!9.49!KLF7;;chr2:145274900..145274934,-!p4@ZEB2!0.20!8.03!ZEB2;;chr19:19516464..19516492,+!p4@GATAD2A!0.20!6.57!GATAD2A;;chr19:58238958..58239000,-!p1@ZNF671!0.20!5.11!ZNF671;;chr2:208030488..208030551,-!p3@KLF7!0.20!4.38!KLF7;;chr6:134274322..134274342,+!p3@TBPL1!0.20!3.65!TBPL1;;chr10:43932296..43932360,+!p1@ZNF487P!0.20!2.19!ZNF487P;;chr11:47270436..47270464,+!p2@NR1H3!0.20!2.19!NR1H3;;chr12:48298765..48298783,-!p2@VDR!0.20!2.19!VDR;;chr16:31085058..31085078,-!p2@ZNF668!0.20!2.19!ZNF668;;chr4:144435112..144435176,+!p3@SMARCA5!0.20!2.19!SMARCA5;;chr1:151043070..151043110,+!p3@GABPB2!0.20!1.46!GABPB2;;chr1:43148855..43148908,+!p4@YBX1!0.20!1.46!YBX1;;chr21:36260295..36260310,-!p3@RUNX1!0.20!1.46!RUNX1;;chr21:36260343..36260402,-!p6@RUNX1!0.20!1.46!RUNX1;;chr15:77713299..77713316,+!p3@HMG20A!0.20!1.46!HMG20A;;chr9:4299959..4299974,-!p4@GLIS3!0.20!1.46!GLIS3;;chr9:2015275..2015287,+!p8@SMARCA2!0.20!1.46!SMARCA2;;chr2:121493717..121493755,+!p3@GLI2!0.20!0.73!GLI2;;chr10:63851669..63851682,+!p10@ARID5B!0.20!0.73!ARID5B;;chr12:72056749..72056767,+!p6@THAP2!0.20!0.73!THAP2;;chr7:14028488..14028516,-!p2@ETV1!0.20!0.73!ETV1;;chr15:96869511..96869525,+!p16@NR2F2!0.20!0.73!NR2F2;;chr16:88519743..88519754,+!p2@ZFPM1!0.20!0.73!ZFPM1;;chr18:3452133..3452150,+!p19@TGIF1!0.20!0.73!TGIF1;;chr1:203764689..203764700,+!p3@ZC3H11A!0.20!0.73!ZC3H11A;;chr8:48650715..48650735,-!p1@CEBPD!0.19!180.39!CEBPD;;chr14:35873947..35873965,-!p1@NFKBIA!0.19!89.10!NFKBIA;;chr1:26496382..26496457,+!p1@ZNF593!0.19!84.72!ZNF593;;chr17:7590797..7590815,-!p1@TP53!0.19!60.62!TP53;;chr1:161736102..161736123,+!p1@ATF6!0.19!36.52!ATF6;;chr19:57874835..57874966,+!p1@TRAPPC2P1,p1@TRAPPC2,p1@ZNF547!0.19!25.56!ZNF547;;chr16:31724552..31724617,+!p1@ZNF720!0.19!18.99!ZNF720;;chr12:77459306..77459365,-!p1@E2F7!0.19!16.80!E2F7;;chr19:44439387..44439419,-!p2@ZNF45!0.19!4.38!ZNF45;;chr22:20748456..20748488,+!p2@ZNF74!0.19!2.92!ZNF74;;chr1:91487516..91487528,-!p4@ZNF644!0.19!2.19!ZNF644;;chr10:44144264..44144286,-!p2@ZNF32!0.19!2.19!ZNF32;;chr10:77161133..77161176,-!p3@ZNF503!0.19!2.19!ZNF503;;chr19:36980455..36980469,-!p2@ZNF566!0.19!2.19!ZNF566;;chr15:96875657..96875760,+!p14@NR2F2!0.19!1.46!NR2F2;;chr2:231084723..231084734,-!p4@SP110!0.19!1.46!SP110;;chr2:85981222..85981259,+!p2@ATOH8!0.19!1.46!ATOH8;;chr9:14082760..14082775,-!p6@NFIB!0.19!1.46!NFIB;;chr7:137564372..137564394,-!p7@CREB3L2!0.19!1.46!CREB3L2;;chr11:3400442..3400453,-!p2@ZNF195!0.19!1.46!ZNF195;;chr11:65430586..65430593,-!p5@RELA!0.19!0.73!RELA;;chr12:27485733..27485742,+!p5@ARNTL2!0.19!0.73!ARNTL2;;chr12:3068957..3068978,+!p6@TEAD4!0.19!0.73!TEAD4;;chr12:53847004..53847008,+!p13@PCBP2!0.19!0.73!PCBP2;;chr14:35872414..35872425,-!p7@NFKBIA!0.19!0.73!NFKBIA;;chr15:85144307..85144329,+!p2@ZSCAN2!0.19!0.73!ZSCAN2;;chr16:30407021..30407061,+!p3@ZNF48!0.19!0.73!ZNF48;;chr19:19303794..19303805,+!p5@RFXANK!0.19!0.73!RFXANK;;chr2:145274998..145275012,-!p13@ZEB2!0.19!0.73!ZEB2;;chr2:24930357..24930402,+!p3@NCOA1!0.19!0.73!NCOA1;;chr3:14989138..14989151,+!p6@NR2C2!0.19!0.73!NR2C2;;chr6:126240463..126240489,+!p6@NCOA7!0.19!0.73!NCOA7;;chr6:21594252..21594285,+!p11@SOX4!0.19!0.73!SOX4;;chr1:114301755..114301796,-!p3@PHTF1!0.19!0.73!PHTF1;;chr1:209979467..209979494,-!p1@IRF6!0.19!0.73!IRF6;;chr1:23696348..23696363,-!p4@ZNF436!0.19!0.73!ZNF436;;chr21:30671145..30671156,+!p8@BACH1!0.19!0.73!BACH1;;chr6:34204642..34204664,+!p2@HMGA1!0.18!184.77!HMGA1;;chr16:8962853..8962878,-!p1@CARHSP1!0.18!79.60!CARHSP1;;chr6:144329384..144329405,-!p1@PLAGL1!0.18!15.34!PLAGL1;;chr15:96874012..96874042,+!p2@NR2F2!0.18!11.68!NR2F2;;chr6:28193037..28193086,+!p1@ZNF193!0.18!10.22!ZNF193;;chr12:27485785..27485816,+!p1@ARNTL2!0.18!8.76!ARNTL2;;chrX:70503529..70503549,+!p2@NONO!0.18!6.57!NONO;;chrX:83757450..83757485,-!p1@HDX!0.18!5.11!HDX;;chr11:128392273..128392308,-!p2@ETS1!0.18!5.11!ETS1;;chr17:42296855..42296894,-!p4@UBTF!0.18!4.38!UBTF;;chr1:43148792..43148849,+!p2@YBX1!0.18!4.38!YBX1;;chr10:114710244..114710257,+!p3@TCF7L2!0.18!2.92!TCF7L2;;chr12:72057747..72057854,+!p4@THAP2!0.18!2.92!THAP2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.18!2.19!SOHLH2;;chr13:45151403..45151433,-!p5@TSC22D1!0.18!2.19!TSC22D1;;chr14:61191018..61191048,-!p1@SIX4!0.18!2.19!SIX4;;chr9:2017383..2017417,+!p5@SMARCA2!0.18!2.19!SMARCA2;;chr5:174151553..174151610,+!p1@MSX2!0.18!1.46!MSX2;;chr6:10412600..10412637,-!p1@TFAP2A!0.18!1.46!TFAP2A;;chr19:42788636..42788660,+!p1@CIC!0.18!1.46!CIC;;chr1:249132462..249132481,+!p6@ZNF672!0.18!1.46!ZNF672;;chr20:48807615..48807644,+!p6@CEBPB!0.18!1.46!CEBPB;;chr15:42743341..42743377,-!p3@ZFP106!0.18!1.46!ZFP106;;chr16:30418894..30418909,+!p2@ZNF771!0.18!1.46!ZNF771;;chr17:79885633..79885645,-!p4@MAFG!0.18!1.46!MAFG;;chr3:71630690..71630750,-!p11@FOXP1!0.18!1.46!FOXP1;;chr2:27805971..27805981,+!p3@ZNF512!0.18!0.73!ZNF512;;chr3:37217544..37217586,-!p6@LRRFIP2!0.18!0.73!LRRFIP2;;chr6:157098993..157099006,+!p12@ARID1B!0.18!0.73!ARID1B;;chr10:3824229..3824253,-!p7@KLF6!0.18!0.73!KLF6;;chr12:57914481..57914509,+!p5@MBD6!0.18!0.73!MBD6;;chr16:67063262..67063273,+!p7@CBFB!0.18!0.73!CBFB;;chr18:3447572..3447603,+!p17@TGIF1!0.18!0.73!TGIF1;;chr19:20011696..20011705,+!p4@ZNF93!0.18!0.73!ZNF93;;chr19:58666502..58666519,-!p4@ZNF329!0.18!0.73!ZNF329;;chr1:164528687..164528711,+!p6@PBX1!0.18!0.73!PBX1;;chr22:41697520..41697613,+!p1@ZC3H7B!0.17!76.68!ZC3H7B;;chr3:71114066..71114114,-!p1@FOXP1!0.17!27.02!FOXP1;;chr10:31608127..31608156,+!p1@ZEB1!0.17!24.10!ZEB1;;chr3:178789566..178789620,-!p1@ZMAT3!0.17!23.37!ZMAT3;;chr6:35464817..35464894,-!p1@TEAD3!0.17!19.72!TEAD3;;chr11:64073022..64073056,+!p1@ESRRA!0.17!15.34!ESRRA;;chr10:76586348..76586366,+!p1@KAT6B!0.17!9.49!KAT6B;;chr8:37553261..37553282,+!p2@ZNF703!0.17!9.49!ZNF703;;chr1:161015676..161015694,-!p3@USF1!0.17!4.38!USF1;;chr19:7069426..7069482,+!p2@ZNF557!0.17!2.92!ZNF557;;chr21:36259445..36259519,-!p4@RUNX1!0.17!2.92!RUNX1;;chr6:126102254..126102289,+!p5@NCOA7!0.17!2.92!NCOA7;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.17!2.19!ZNF285;;chr2:113993052..113993097,-!p2@PAX8!0.17!2.19!PAX8;;chr12:53848505..53848532,+!p4@PCBP2!0.17!2.19!PCBP2;;chr18:32821037..32821057,+!p2@ZNF397!0.17!2.19!ZNF397;;chr15:67358146..67358157,+!p7@SMAD3!0.17!1.46!SMAD3;;chr18:53257001..53257015,-!p5@TCF4!0.17!1.46!TCF4;;chr19:3572908..3572917,+!p3@HMG20B!0.17!1.46!HMG20B;;chr5:132299037..132299048,-!p7@AFF4!0.17!1.46!AFF4;;chr6:157099159..157099185,+!p6@ARID1B!0.17!1.46!ARID1B;;chr6:45390002..45390023,+!p6@RUNX2!0.17!1.46!RUNX2;;chr7:113726357..113726443,+!p1@FOXP2!0.17!1.46!FOXP2;;chr7:150076370..150076396,+!p2@ZNF775!0.17!1.46!ZNF775;;chr11:67007522..67007533,+!p5@KDM2A!0.17!1.46!KDM2A;;chr3:71114115..71114126,-!p14@FOXP1!0.17!1.46!FOXP1;;chr3:169381420..169381535,-!p1@MECOM!0.17!0.73!MECOM;;chr4:2264015..2264041,-!p4@MXD4!0.17!0.73!MXD4;;chr4:83822199..83822239,+!p2@THAP9!0.17!0.73!THAP9;;chr15:77197753..77197772,-!p2@SCAPER!0.17!0.73!SCAPER;;chr17:46620898..46620927,-!p9@HOXB2!0.17!0.73!HOXB2;;chr1:150849208..150849217,-!p3@ARNT!0.17!0.73!ARNT;;chr12:96640858..96640878,+!p6@ELK3!0.17!0.73!ELK3;;chr14:35873136..35873155,-!p9@NFKBIA!0.17!0.73!NFKBIA;;chr8:128752734..128752763,+!p13@MYC!0.17!0.73!MYC;;chr11:65667846..65667868,-!p1@FOSL1!0.16!34.32!FOSL1;;chr15:67358163..67358192,+!p1@SMAD3!0.16!29.94!SMAD3;;chr7:148892653..148892729,+!p1@ZNF282!0.16!18.26!ZNF282;;chr21:44394645..44394737,+!p1@PKNOX1!0.16!10.22!PKNOX1;;chr16:29819403..29819442,+!p5@MAZ!0.16!10.22!MAZ;;chr8:145980808..145980922,-!p1@ZNF251!0.16!8.76!ZNF251;;chr19:52901094..52901134,+!p1@ZNF528!0.16!8.03!ZNF528;;chr19:57106647..57106686,+!p1@ZNF71!0.16!8.03!ZNF71;;chr10:104154246..104154347,+!p3@NFKB2!0.16!7.30!NFKB2;;chr6:43139041..43139094,+!p3@SRF!0.16!6.57!SRF;;chr19:44952635..44952668,-!p1@ZNF229!0.16!5.84!ZNF229;;chr19:36134528..36134563,+!p1@ETV2!0.16!2.92!ETV2;;chr19:35225078..35225120,+!p2@ZNF181!0.16!2.19!ZNF181;;chr10:63809134..63809145,+!p6@ARID5B!0.16!2.19!ARID5B;;chr19:56988677..56988729,-!p1@ZNF667!0.16!1.46!ZNF667;;chr1:91487806..91487826,-!p5@ZNF644!0.16!1.46!ZNF644;;chr16:8962202..8962222,-!p3@CARHSP1!0.16!1.46!CARHSP1;;
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
 |fonse_cell_line_closure=

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FF:12652-134H6: Difference between revisions

From FANTOM5_SSTAR

Revision as of 22:58, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0