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MCL coexpression mm9:3062: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!2.13e-25!64;UBERON:0003075!2.13e-25!64;UBERON:0007284!2.13e-25!64;UBERON:0000073!3.61e-21!54;UBERON:0003056!5.90e-21!49;UBERON:0010371!7.88e-21!73;UBERON:0001049!1.22e-20!52;UBERON:0005068!1.22e-20!52;UBERON:0006241!1.22e-20!52;UBERON:0007135!1.22e-20!52;UBERON:0000955!4.10e-19!47;UBERON:0006238!4.10e-19!47;UBERON:0004121!1.14e-18!95;UBERON:0000924!1.14e-18!95;UBERON:0006601!1.14e-18!95;UBERON:0002616!6.16e-18!46;UBERON:0001016!8.53e-17!75;UBERON:0001017!1.59e-16!73;UBERON:0002020!1.69e-15!34;UBERON:0003080!8.51e-15!40;UBERON:0010314!3.47e-14!92;UBERON:0003528!8.03e-14!29;UBERON:0002791!8.03e-14!29;UBERON:0001893!8.03e-14!29;UBERON:0002780!1.01e-13!39;UBERON:0001890!1.01e-13!39;UBERON:0006240!1.01e-13!39;UBERON:0002021!1.12e-12!10;UBERON:0000411!1.12e-12!10;UBERON:0001950!1.12e-12!10;UBERON:0000956!2.29e-11!21;UBERON:0001869!2.29e-11!21;UBERON:0000203!2.29e-11!21;UBERON:0002619!3.02e-11!17;UBERON:0000970!2.03e-07!9;UBERON:0000019!2.03e-07!9;UBERON:0000047!2.03e-07!9;UBERON:0010312!2.03e-07!9;UBERON:0004088!2.03e-07!9;UBERON:0002104!2.03e-07!9;UBERON:0001456!2.03e-07!9;UBERON:0003072!2.03e-07!9;UBERON:0004128!2.03e-07!9;UBERON:0003071!2.03e-07!9
}}
}}

Revision as of 19:28, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:66865674..66865677,-p@chr16:66865674..66865677
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Mm9::chr16:67518510..67518513,-p@chr16:67518510..67518513
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Mm9::chr5:19458474..19458477,+p@chr5:19458474..19458477
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
neurectoderm2.13e-2564
neural plate2.13e-2564
presumptive neural plate2.13e-2564
regional part of nervous system3.61e-2154
pre-chordal neural plate5.90e-2149
ecto-epithelium7.88e-2173
neural tube1.22e-2052
neural rod1.22e-2052
future spinal cord1.22e-2052
neural keel1.22e-2052
brain4.10e-1947
future brain4.10e-1947
ectoderm-derived structure1.14e-1895
ectoderm1.14e-1895
presumptive ectoderm1.14e-1895
regional part of brain6.16e-1846
nervous system8.53e-1775
central nervous system1.59e-1673
gray matter1.69e-1534
anterior neural tube8.51e-1540
structure with developmental contribution from neural crest3.47e-1492
brain grey matter8.03e-1429
regional part of telencephalon8.03e-1429
telencephalon8.03e-1429
regional part of forebrain1.01e-1339
forebrain1.01e-1339
future forebrain1.01e-1339
occipital lobe1.12e-1210
visual cortex1.12e-1210
neocortex1.12e-1210
cerebral cortex2.29e-1121
cerebral hemisphere2.29e-1121
pallium2.29e-1121
regional part of cerebral cortex3.02e-1117
eye2.03e-079
camera-type eye2.03e-079
simple eye2.03e-079
immature eye2.03e-079
ocular region2.03e-079
visual system2.03e-079
face2.03e-079
optic cup2.03e-079
optic vesicle2.03e-079
eye primordium2.03e-079


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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