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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!2.41e-29!64;UBERON:0003075!2.41e-29!64;UBERON:0007284!2.41e-29!64;UBERON:0003056!1.26e-27!49;UBERON:0010371!7.11e-25!73;UBERON:0000955!1.69e-23!47;UBERON:0006238!1.69e-23!47;UBERON:0001049!3.19e-23!52;UBERON:0005068!3.19e-23!52;UBERON:0006241!3.19e-23!52;UBERON:0007135!3.19e-23!52;UBERON:0002616!1.59e-22!46;UBERON:0000073!2.42e-22!54;UBERON:0010314!6.49e-21!92;UBERON:0003080!1.11e-20!40;UBERON:0004121!1.24e-20!95;UBERON:0000924!1.24e-20!95;UBERON:0006601!1.24e-20!95;UBERON:0002780!9.01e-20!39;UBERON:0001890!9.01e-20!39;UBERON:0006240!9.01e-20!39;UBERON:0001017!2.80e-19!73;UBERON:0001016!2.94e-18!75;UBERON:0003528!1.61e-14!29;UBERON:0002791!1.61e-14!29;UBERON:0001893!1.61e-14!29;UBERON:0002020!2.97e-14!34;UBERON:0000956!2.29e-10!21;UBERON:0001869!2.29e-10!21;UBERON:0000203!2.29e-10!21;UBERON:0002021!3.23e-10!10;UBERON:0000411!3.23e-10!10;UBERON:0001950!3.23e-10!10;UBERON:0002619!7.28e-09!17;UBERON:0000970!9.50e-08!9;UBERON:0000019!9.50e-08!9;UBERON:0000047!9.50e-08!9;UBERON:0010312!9.50e-08!9;UBERON:0004088!9.50e-08!9;UBERON:0002104!9.50e-08!9;UBERON:0001456!9.50e-08!9;UBERON:0003072!9.50e-08!9;UBERON:0004128!9.50e-08!9;UBERON:0003071!9.50e-08!9
}}
}}

Revision as of 21:16, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:104300588..104300589,+p@chr12:104300588..104300589
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Mm9::chr15:30426557..30426563,+p@chr15:30426557..30426563
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Mm9::chr18:23181330..23181342,-p@chr18:23181330..23181342
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Mm9::chr19:47091316..47091319,+p@chr19:47091316..47091319
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Mm9::chr1:160481717..160481720,+p@chr1:160481717..160481720
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Mm9::chr1:176681777..176681782,+p@chr1:176681777..176681782
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Mm9::chr1:94980548..94980551,-p@chr1:94980548..94980551
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Mm9::chr2:113658131..113658135,-p@chr2:113658131..113658135
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Mm9::chr2:121395252..121395254,-p@chr2:121395252..121395254
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
neurectoderm2.41e-2964
neural plate2.41e-2964
presumptive neural plate2.41e-2964
pre-chordal neural plate1.26e-2749
ecto-epithelium7.11e-2573
brain1.69e-2347
future brain1.69e-2347
neural tube3.19e-2352
neural rod3.19e-2352
future spinal cord3.19e-2352
neural keel3.19e-2352
regional part of brain1.59e-2246
regional part of nervous system2.42e-2254
structure with developmental contribution from neural crest6.49e-2192
anterior neural tube1.11e-2040
ectoderm-derived structure1.24e-2095
ectoderm1.24e-2095
presumptive ectoderm1.24e-2095
regional part of forebrain9.01e-2039
forebrain9.01e-2039
future forebrain9.01e-2039
central nervous system2.80e-1973
nervous system2.94e-1875
brain grey matter1.61e-1429
regional part of telencephalon1.61e-1429
telencephalon1.61e-1429
gray matter2.97e-1434
cerebral cortex2.29e-1021
cerebral hemisphere2.29e-1021
pallium2.29e-1021
occipital lobe3.23e-1010
visual cortex3.23e-1010
neocortex3.23e-1010
regional part of cerebral cortex7.28e-0917
eye9.50e-089
camera-type eye9.50e-089
simple eye9.50e-089
immature eye9.50e-089
ocular region9.50e-089
visual system9.50e-089
face9.50e-089
optic cup9.50e-089
optic vesicle9.50e-089
eye primordium9.50e-089


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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