FFCP PHASE1:Mm9::chr2:26244890..26244901,+: Difference between revisions
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|id=chr2:26244890..26244901,+ | |id=chr2:26244890..26244901,+ | ||
|ontology_enrichment_celltype=CL:0000393!5.80e-11!39;CL:0000211!5.80e-11!39;CL:0000117!1.27e-10!23;CL:0000337!1.27e-10!23;CL:0000540!2.60e-10!33;CL:0000047!2.60e-10!33;CL:0000031!2.60e-10!33;CL:0000404!2.60e-10!33;CL:0000221!5.67e-09!44;CL:0000133!5.67e-09!44;CL:0000055!7.54e-09!50;CL:0002319!8.34e-09!43 | |ontology_enrichment_celltype=CL:0000393!5.80e-11!39;CL:0000211!5.80e-11!39;CL:0000117!1.27e-10!23;CL:0000337!1.27e-10!23;CL:0000540!2.60e-10!33;CL:0000047!2.60e-10!33;CL:0000031!2.60e-10!33;CL:0000404!2.60e-10!33;CL:0000221!5.67e-09!44;CL:0000133!5.67e-09!44;CL:0000055!7.54e-09!50;CL:0002319!8.34e-09!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.86e-12,23;CL:0000337,2.86e-12,23;CL:0000393,1.59e-11,39;CL:0000211,1.59e-11,39;CL:0000540,4.62e-11,33;CL:0000047,4.62e-11,33;CL:0000031,4.62e-11,33;CL:0000404,4.62e-11,33;CL:0000221,7.20e-10,44;CL:0000133,7.20e-10,44;CL:0002319,1.13e-09,43;CL:0000034,4.62e-07,97 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.76e-23!75;UBERON:0001016!7.76e-23!75;UBERON:0001017!5.60e-22!73;UBERON:0005743!5.60e-22!73;UBERON:0004121!2.41e-21!102;UBERON:0000924!2.41e-21!102;UBERON:0006601!2.41e-21!102;UBERON:0001049!2.11e-20!52;UBERON:0005068!2.11e-20!52;UBERON:0006241!2.11e-20!52;UBERON:0007135!2.11e-20!52;UBERON:0002346!3.48e-19!71;UBERON:0003075!3.48e-19!71;UBERON:0007284!3.48e-19!71;UBERON:0002020!7.42e-19!34;UBERON:0000955!2.10e-18!50;UBERON:0006238!2.10e-18!50;UBERON:0002616!7.27e-18!49;UBERON:0003080!3.26e-17!40;UBERON:0000033!8.94e-17!63;UBERON:0002780!1.24e-16!39;UBERON:0001890!1.24e-16!39;UBERON:0006240!1.24e-16!39;UBERON:0003056!3.40e-16!49;UBERON:0002791!7.61e-16!29;UBERON:0003528!7.61e-16!29;UBERON:0001893!7.61e-16!29;UBERON:0000956!1.88e-12!21;UBERON:0001869!1.88e-12!21;UBERON:0000203!1.88e-12!21;UBERON:0007811!6.82e-11!86;UBERON:0000153!7.18e-11!94;UBERON:0002619!1.03e-10!17;UBERON:0002021!5.42e-08!10;UBERON:0000411!5.42e-08!10;UBERON:0001950!5.42e-08!10 | |ontology_enrichment_uberon=UBERON:0000073!7.76e-23!75;UBERON:0001016!7.76e-23!75;UBERON:0001017!5.60e-22!73;UBERON:0005743!5.60e-22!73;UBERON:0004121!2.41e-21!102;UBERON:0000924!2.41e-21!102;UBERON:0006601!2.41e-21!102;UBERON:0001049!2.11e-20!52;UBERON:0005068!2.11e-20!52;UBERON:0006241!2.11e-20!52;UBERON:0007135!2.11e-20!52;UBERON:0002346!3.48e-19!71;UBERON:0003075!3.48e-19!71;UBERON:0007284!3.48e-19!71;UBERON:0002020!7.42e-19!34;UBERON:0000955!2.10e-18!50;UBERON:0006238!2.10e-18!50;UBERON:0002616!7.27e-18!49;UBERON:0003080!3.26e-17!40;UBERON:0000033!8.94e-17!63;UBERON:0002780!1.24e-16!39;UBERON:0001890!1.24e-16!39;UBERON:0006240!1.24e-16!39;UBERON:0003056!3.40e-16!49;UBERON:0002791!7.61e-16!29;UBERON:0003528!7.61e-16!29;UBERON:0001893!7.61e-16!29;UBERON:0000956!1.88e-12!21;UBERON:0001869!1.88e-12!21;UBERON:0000203!1.88e-12!21;UBERON:0007811!6.82e-11!86;UBERON:0000153!7.18e-11!94;UBERON:0002619!1.03e-10!17;UBERON:0002021!5.42e-08!10;UBERON:0000411!5.42e-08!10;UBERON:0001950!5.42e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.00e-26,75;UBERON:0000073,1.70e-25,54;UBERON:0001017,3.08e-25,73;UBERON:0001049,6.86e-25,52;UBERON:0005068,6.86e-25,52;UBERON:0006241,6.86e-25,52;UBERON:0007135,6.86e-25,52;UBERON:0004121,1.16e-24,95;UBERON:0000924,1.16e-24,95;UBERON:0006601,1.16e-24,95;UBERON:0010371,1.91e-24,73;UBERON:0002346,1.25e-23,64;UBERON:0003075,1.25e-23,64;UBERON:0007284,1.25e-23,64;UBERON:0002020,5.23e-22,34;UBERON:0000955,2.39e-21,47;UBERON:0006238,2.39e-21,47;UBERON:0002616,1.04e-20,46;UBERON:0003080,3.14e-20,40;UBERON:0002780,1.54e-19,39;UBERON:0001890,1.54e-19,39;UBERON:0006240,1.54e-19,39;UBERON:0003056,7.82e-19,49;UBERON:0003528,1.91e-18,29;UBERON:0002791,1.91e-18,29;UBERON:0001893,1.91e-18,29;UBERON:0010314,5.75e-15,92;UBERON:0000956,1.96e-14,21;UBERON:0001869,1.96e-14,21;UBERON:0000203,1.96e-14,21;UBERON:0002619,2.23e-12,17;UBERON:0002021,3.64e-09,10;UBERON:0000411,3.64e-09,10;UBERON:0001950,3.64e-09,10 | |||
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| ||
|short_description=p2@Pmpca | |short_description=p2@Pmpca | ||
}} | }} |
Revision as of 23:03, 13 November 2012
Short description: | p2@Pmpca |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pmpca_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 14bp_to_ENSMUST00000134871_5end |
EntrezGene: | Pmpca |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.86e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.86e-12 | 23 |
electrically responsive cell | 1.59e-11 | 39 |
electrically active cell | 1.59e-11 | 39 |
neuron | 4.62e-11 | 33 |
neuronal stem cell | 4.62e-11 | 33 |
neuroblast | 4.62e-11 | 33 |
electrically signaling cell | 4.62e-11 | 33 |
ectodermal cell | 7.20e-10 | 44 |
neurectodermal cell | 7.20e-10 | 44 |
neural cell | 1.13e-09 | 43 |
stem cell | 4.62e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.00e-26 | 75 |
regional part of nervous system | 1.70e-25 | 54 |
central nervous system | 3.08e-25 | 73 |
neural tube | 6.86e-25 | 52 |
neural rod | 6.86e-25 | 52 |
future spinal cord | 6.86e-25 | 52 |
neural keel | 6.86e-25 | 52 |
ectoderm-derived structure | 1.16e-24 | 95 |
ectoderm | 1.16e-24 | 95 |
presumptive ectoderm | 1.16e-24 | 95 |
ecto-epithelium | 1.91e-24 | 73 |
neurectoderm | 1.25e-23 | 64 |
neural plate | 1.25e-23 | 64 |
presumptive neural plate | 1.25e-23 | 64 |
gray matter | 5.23e-22 | 34 |
brain | 2.39e-21 | 47 |
future brain | 2.39e-21 | 47 |
regional part of brain | 1.04e-20 | 46 |
anterior neural tube | 3.14e-20 | 40 |
regional part of forebrain | 1.54e-19 | 39 |
forebrain | 1.54e-19 | 39 |
future forebrain | 1.54e-19 | 39 |
pre-chordal neural plate | 7.82e-19 | 49 |
brain grey matter | 1.91e-18 | 29 |
regional part of telencephalon | 1.91e-18 | 29 |
telencephalon | 1.91e-18 | 29 |
structure with developmental contribution from neural crest | 5.75e-15 | 92 |
cerebral cortex | 1.96e-14 | 21 |
cerebral hemisphere | 1.96e-14 | 21 |
pallium | 1.96e-14 | 21 |
regional part of cerebral cortex | 2.23e-12 | 17 |
occipital lobe | 3.64e-09 | 10 |
visual cortex | 3.64e-09 | 10 |
neocortex | 3.64e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.